data_1ZHP
#
_model_server_result.job_id            Y0G6kyyg8gkeB0c3zOl16A 
_model_server_result.datetime_utc      '2024-10-10 21:23:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zhp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
#
_entry.id    1ZHP 
#
_exptl.entry_id    1ZHP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZHP 
_cell.length_a            120.157 
_cell.length_b            120.157 
_cell.length_c            120.157 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZHP 
_symmetry.cell_setting             cubic 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A SG CYS 113 A CYS 123 1_555 C SG2 GSH . A GSH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     1ZHP 
_atom_sites.fract_transf_matrix[1][1]    0.008322 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008322 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BEN A 1 1001 1001 BEN BEN . 
C 3 GSH A 1 1002 1002 GSH GSH . 
D 4 HOH A 1 1003 1 HOH HOH . 
D 4 HOH A 2 1004 2 HOH HOH . 
D 4 HOH A 3 1005 3 HOH HOH . 
D 4 HOH A 4 1006 4 HOH HOH . 
D 4 HOH A 5 1007 5 HOH HOH . 
D 4 HOH A 6 1008 6 HOH HOH . 
D 4 HOH A 7 1009 7 HOH HOH . 
D 4 HOH A 8 1010 8 HOH HOH . 
D 4 HOH A 9 1011 9 HOH HOH . 
D 4 HOH A 10 1012 10 HOH HOH . 
D 4 HOH A 11 1013 11 HOH HOH . 
D 4 HOH A 12 1014 12 HOH HOH . 
D 4 HOH A 13 1015 13 HOH HOH . 
D 4 HOH A 14 1016 14 HOH HOH . 
D 4 HOH A 15 1017 15 HOH HOH . 
D 4 HOH A 16 1018 16 HOH HOH . 
D 4 HOH A 17 1019 17 HOH HOH . 
D 4 HOH A 18 1020 18 HOH HOH . 
D 4 HOH A 19 1021 19 HOH HOH . 
D 4 HOH A 20 1022 20 HOH HOH . 
D 4 HOH A 21 1023 21 HOH HOH . 
D 4 HOH A 22 1024 22 HOH HOH . 
D 4 HOH A 23 1025 23 HOH HOH . 
D 4 HOH A 24 1026 24 HOH HOH . 
D 4 HOH A 25 1027 25 HOH HOH . 
D 4 HOH A 26 1028 26 HOH HOH . 
D 4 HOH A 27 1029 27 HOH HOH . 
D 4 HOH A 28 1030 28 HOH HOH . 
D 4 HOH A 29 1031 29 HOH HOH . 
D 4 HOH A 30 1032 30 HOH HOH . 
D 4 HOH A 31 1033 31 HOH HOH . 
D 4 HOH A 32 1034 32 HOH HOH . 
D 4 HOH A 33 1035 33 HOH HOH . 
D 4 HOH A 34 1036 34 HOH HOH . 
D 4 HOH A 35 1037 35 HOH HOH . 
D 4 HOH A 36 1038 36 HOH HOH . 
D 4 HOH A 37 1039 37 HOH HOH . 
D 4 HOH A 38 1040 38 HOH HOH . 
D 4 HOH A 39 1041 39 HOH HOH . 
D 4 HOH A 40 1042 41 HOH HOH . 
D 4 HOH A 41 1043 42 HOH HOH . 
D 4 HOH A 42 1044 44 HOH HOH . 
D 4 HOH A 43 1045 45 HOH HOH . 
D 4 HOH A 44 1046 46 HOH HOH . 
D 4 HOH A 45 1047 47 HOH HOH . 
D 4 HOH A 46 1048 48 HOH HOH . 
D 4 HOH A 47 1049 49 HOH HOH . 
D 4 HOH A 48 1050 50 HOH HOH . 
D 4 HOH A 49 1051 51 HOH HOH . 
D 4 HOH A 50 1052 52 HOH HOH . 
D 4 HOH A 51 1053 53 HOH HOH . 
D 4 HOH A 52 1054 54 HOH HOH . 
D 4 HOH A 53 1055 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . B 2 11.4 39.83 70.067 1 38.55 ? C1 BEN 1001 A 1 
HETATM 2 C C2 BEN . . . B 2 10 39.509 70.096 1 38.75 ? C2 BEN 1001 A 1 
HETATM 3 C C3 BEN . . . B 2 9.566 38.08 70.475 1 37.14 ? C3 BEN 1001 A 1 
HETATM 4 C C4 BEN . . . B 2 10.57 37.129 70.785 1 36.23 ? C4 BEN 1001 A 1 
HETATM 5 C C5 BEN . . . B 2 11.951 37.498 70.745 1 35.69 ? C5 BEN 1001 A 1 
HETATM 6 C C6 BEN . . . B 2 12.361 38.819 70.393 1 35.76 ? C6 BEN 1001 A 1 
HETATM 7 C C BEN . . . B 2 11.827 41.071 69.731 1 39.04 ? C BEN 1001 A 1 
HETATM 8 N N1 BEN . . . B 2 10.907 42.097 69.553 1 38.2 ? N1 BEN 1001 A 1 
HETATM 9 N N2 BEN . . . B 2 13.068 41.292 69.564 1 37.53 ? N2 BEN 1001 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           9 
#