data_1ZHP # _model_server_result.job_id g-EK_Yuhz05lNZTHXHXqqA _model_server_result.datetime_utc '2024-12-04 12:17:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zhp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1ZHP # _exptl.entry_id 1ZHP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZHP _cell.length_a 120.157 _cell.length_b 120.157 _cell.length_c 120.157 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZHP _symmetry.cell_setting cubic _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A SG CYS 113 A CYS 123 1_555 C SG2 GSH . A GSH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 1ZHP _atom_sites.fract_transf_matrix[1][1] 0.008322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 1001 1001 BEN BEN . C 3 GSH A 1 1002 1002 GSH GSH . D 4 HOH A 1 1003 1 HOH HOH . D 4 HOH A 2 1004 2 HOH HOH . D 4 HOH A 3 1005 3 HOH HOH . D 4 HOH A 4 1006 4 HOH HOH . D 4 HOH A 5 1007 5 HOH HOH . D 4 HOH A 6 1008 6 HOH HOH . D 4 HOH A 7 1009 7 HOH HOH . D 4 HOH A 8 1010 8 HOH HOH . D 4 HOH A 9 1011 9 HOH HOH . D 4 HOH A 10 1012 10 HOH HOH . D 4 HOH A 11 1013 11 HOH HOH . D 4 HOH A 12 1014 12 HOH HOH . D 4 HOH A 13 1015 13 HOH HOH . D 4 HOH A 14 1016 14 HOH HOH . D 4 HOH A 15 1017 15 HOH HOH . D 4 HOH A 16 1018 16 HOH HOH . D 4 HOH A 17 1019 17 HOH HOH . D 4 HOH A 18 1020 18 HOH HOH . D 4 HOH A 19 1021 19 HOH HOH . D 4 HOH A 20 1022 20 HOH HOH . D 4 HOH A 21 1023 21 HOH HOH . D 4 HOH A 22 1024 22 HOH HOH . D 4 HOH A 23 1025 23 HOH HOH . D 4 HOH A 24 1026 24 HOH HOH . D 4 HOH A 25 1027 25 HOH HOH . D 4 HOH A 26 1028 26 HOH HOH . D 4 HOH A 27 1029 27 HOH HOH . D 4 HOH A 28 1030 28 HOH HOH . D 4 HOH A 29 1031 29 HOH HOH . D 4 HOH A 30 1032 30 HOH HOH . D 4 HOH A 31 1033 31 HOH HOH . D 4 HOH A 32 1034 32 HOH HOH . D 4 HOH A 33 1035 33 HOH HOH . D 4 HOH A 34 1036 34 HOH HOH . D 4 HOH A 35 1037 35 HOH HOH . D 4 HOH A 36 1038 36 HOH HOH . D 4 HOH A 37 1039 37 HOH HOH . D 4 HOH A 38 1040 38 HOH HOH . D 4 HOH A 39 1041 39 HOH HOH . D 4 HOH A 40 1042 41 HOH HOH . D 4 HOH A 41 1043 42 HOH HOH . D 4 HOH A 42 1044 44 HOH HOH . D 4 HOH A 43 1045 45 HOH HOH . D 4 HOH A 44 1046 46 HOH HOH . D 4 HOH A 45 1047 47 HOH HOH . D 4 HOH A 46 1048 48 HOH HOH . D 4 HOH A 47 1049 49 HOH HOH . D 4 HOH A 48 1050 50 HOH HOH . D 4 HOH A 49 1051 51 HOH HOH . D 4 HOH A 50 1052 52 HOH HOH . D 4 HOH A 51 1053 53 HOH HOH . D 4 HOH A 52 1054 54 HOH HOH . D 4 HOH A 53 1055 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 11.4 39.83 70.067 1 38.55 ? C1 BEN 1001 A 1 HETATM 2 C C2 BEN . . . B 2 10 39.509 70.096 1 38.75 ? C2 BEN 1001 A 1 HETATM 3 C C3 BEN . . . B 2 9.566 38.08 70.475 1 37.14 ? C3 BEN 1001 A 1 HETATM 4 C C4 BEN . . . B 2 10.57 37.129 70.785 1 36.23 ? C4 BEN 1001 A 1 HETATM 5 C C5 BEN . . . B 2 11.951 37.498 70.745 1 35.69 ? C5 BEN 1001 A 1 HETATM 6 C C6 BEN . . . B 2 12.361 38.819 70.393 1 35.76 ? C6 BEN 1001 A 1 HETATM 7 C C BEN . . . B 2 11.827 41.071 69.731 1 39.04 ? C BEN 1001 A 1 HETATM 8 N N1 BEN . . . B 2 10.907 42.097 69.553 1 38.2 ? N1 BEN 1001 A 1 HETATM 9 N N2 BEN . . . B 2 13.068 41.292 69.564 1 37.53 ? N2 BEN 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 9 #