data_1ZI4 # _model_server_result.job_id MpmLjDXIewb3iCpAEK_kJQ _model_server_result.datetime_utc '2024-11-02 14:33:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 1ZI4 # _exptl.entry_id 1ZI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZI4 _cell.length_a 52.4 _cell.length_b 150.1 _cell.length_c 79.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 52.4 0 39.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 FUC GAL C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 1 DRG 2 n B GAL 2 B 2 GAL ? 1 DRG 2 n B FUC 3 B 3 FUC ? 1 DRG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 NAG . B NAG 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing covale ? covale2 B O2 GAL . B GAL 2 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 sing metalc ? metalc1 A SG CYS 20 A CYS 80 1_555 F HG HG . A HG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc2 A O GLY 38 A GLY 98 1_555 F HG HG . A HG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc3 A OG1 THR 59 A THR 119 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc4 A SG CYS 149 A CYS 209 1_555 E HG HG . A HG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A SG CYS 224 A CYS 284 1_555 C HG HG . A HG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc6 A SG CYS 224 A CYS 284 1_555 G HG HG . A HG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc7 A O HIS 245 A HIS 305 1_555 G HG HG . A HG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc8 E HG HG . A HG 403 1_555 H O HOH . A HOH 634 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc9 F HG HG . A HG 404 1_555 H O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.528 ? metalc ? metalc10 G HG HG . A HG 405 1_555 H O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.204 ? metalc ? metalc11 G HG HG . A HG 405 1_555 H O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZI4 _atom_sites.fract_transf_matrix[1][1] 0.019084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HG A 1 401 401 HG HG . D 4 CL A 1 402 402 CL CL . E 3 HG A 1 403 403 HG HG . F 3 HG A 1 404 404 HG HG . G 3 HG A 1 405 405 HG HG . H 5 HOH A 1 501 501 HOH TIP . H 5 HOH A 2 502 502 HOH TIP . H 5 HOH A 3 503 503 HOH TIP . H 5 HOH A 4 504 504 HOH TIP . H 5 HOH A 5 505 505 HOH TIP . H 5 HOH A 6 506 506 HOH TIP . H 5 HOH A 7 507 507 HOH TIP . H 5 HOH A 8 508 508 HOH TIP . H 5 HOH A 9 509 509 HOH TIP . H 5 HOH A 10 510 510 HOH TIP . H 5 HOH A 11 511 511 HOH TIP . H 5 HOH A 12 512 512 HOH TIP . H 5 HOH A 13 513 513 HOH TIP . H 5 HOH A 14 514 514 HOH TIP . H 5 HOH A 15 515 515 HOH TIP . H 5 HOH A 16 516 516 HOH TIP . H 5 HOH A 17 517 517 HOH TIP . H 5 HOH A 18 518 518 HOH TIP . H 5 HOH A 19 519 519 HOH TIP . H 5 HOH A 20 520 520 HOH TIP . H 5 HOH A 21 521 521 HOH TIP . H 5 HOH A 22 522 522 HOH TIP . H 5 HOH A 23 523 523 HOH TIP . H 5 HOH A 24 524 524 HOH TIP . H 5 HOH A 25 525 525 HOH TIP . H 5 HOH A 26 526 526 HOH TIP . H 5 HOH A 27 527 527 HOH TIP . H 5 HOH A 28 528 528 HOH TIP . H 5 HOH A 29 529 529 HOH TIP . H 5 HOH A 30 530 530 HOH TIP . H 5 HOH A 31 531 531 HOH TIP . H 5 HOH A 32 532 532 HOH TIP . H 5 HOH A 33 533 533 HOH TIP . H 5 HOH A 34 534 534 HOH TIP . H 5 HOH A 35 535 535 HOH TIP . H 5 HOH A 36 536 536 HOH TIP . H 5 HOH A 37 537 537 HOH TIP . H 5 HOH A 38 538 538 HOH TIP . H 5 HOH A 39 539 539 HOH TIP . H 5 HOH A 40 540 540 HOH TIP . H 5 HOH A 41 541 541 HOH TIP . H 5 HOH A 42 542 542 HOH TIP . H 5 HOH A 43 543 543 HOH TIP . H 5 HOH A 44 544 544 HOH TIP . H 5 HOH A 45 545 545 HOH TIP . H 5 HOH A 46 546 546 HOH TIP . H 5 HOH A 47 547 547 HOH TIP . H 5 HOH A 48 548 548 HOH TIP . H 5 HOH A 49 549 549 HOH TIP . H 5 HOH A 50 550 550 HOH TIP . H 5 HOH A 51 551 551 HOH TIP . H 5 HOH A 52 552 552 HOH TIP . H 5 HOH A 53 553 553 HOH TIP . H 5 HOH A 54 554 554 HOH TIP . H 5 HOH A 55 555 555 HOH TIP . H 5 HOH A 56 556 556 HOH TIP . H 5 HOH A 57 557 557 HOH TIP . H 5 HOH A 58 558 558 HOH TIP . H 5 HOH A 59 559 559 HOH TIP . H 5 HOH A 60 560 560 HOH TIP . H 5 HOH A 61 561 561 HOH TIP . H 5 HOH A 62 562 562 HOH TIP . H 5 HOH A 63 563 563 HOH TIP . H 5 HOH A 64 564 564 HOH TIP . H 5 HOH A 65 565 565 HOH TIP . H 5 HOH A 66 566 566 HOH TIP . H 5 HOH A 67 567 567 HOH TIP . H 5 HOH A 68 568 568 HOH TIP . H 5 HOH A 69 569 569 HOH TIP . H 5 HOH A 70 570 570 HOH TIP . H 5 HOH A 71 571 571 HOH TIP . H 5 HOH A 72 572 572 HOH TIP . H 5 HOH A 73 573 573 HOH TIP . H 5 HOH A 74 574 574 HOH TIP . H 5 HOH A 75 575 575 HOH TIP . H 5 HOH A 76 576 576 HOH TIP . H 5 HOH A 77 577 577 HOH TIP . H 5 HOH A 78 578 578 HOH TIP . H 5 HOH A 79 579 579 HOH TIP . H 5 HOH A 80 580 580 HOH TIP . H 5 HOH A 81 581 581 HOH TIP . H 5 HOH A 82 582 582 HOH TIP . H 5 HOH A 83 583 583 HOH TIP . H 5 HOH A 84 584 584 HOH TIP . H 5 HOH A 85 585 585 HOH TIP . H 5 HOH A 86 586 586 HOH TIP . H 5 HOH A 87 587 587 HOH TIP . H 5 HOH A 88 588 588 HOH TIP . H 5 HOH A 89 589 589 HOH TIP . H 5 HOH A 90 590 590 HOH TIP . H 5 HOH A 91 591 591 HOH TIP . H 5 HOH A 92 592 592 HOH TIP . H 5 HOH A 93 593 593 HOH TIP . H 5 HOH A 94 594 594 HOH TIP . H 5 HOH A 95 595 595 HOH TIP . H 5 HOH A 96 596 596 HOH TIP . H 5 HOH A 97 597 597 HOH TIP . H 5 HOH A 98 598 598 HOH TIP . H 5 HOH A 99 599 599 HOH TIP . H 5 HOH A 100 600 600 HOH TIP . H 5 HOH A 101 601 601 HOH TIP . H 5 HOH A 102 602 602 HOH TIP . H 5 HOH A 103 603 603 HOH TIP . H 5 HOH A 104 604 604 HOH TIP . H 5 HOH A 105 605 605 HOH TIP . H 5 HOH A 106 606 606 HOH TIP . H 5 HOH A 107 607 607 HOH TIP . H 5 HOH A 108 608 608 HOH TIP . H 5 HOH A 109 609 609 HOH TIP . H 5 HOH A 110 610 610 HOH TIP . H 5 HOH A 111 611 611 HOH TIP . H 5 HOH A 112 612 612 HOH TIP . H 5 HOH A 113 613 613 HOH TIP . H 5 HOH A 114 614 614 HOH TIP . H 5 HOH A 115 615 615 HOH TIP . H 5 HOH A 116 616 616 HOH TIP . H 5 HOH A 117 617 617 HOH TIP . H 5 HOH A 118 618 618 HOH TIP . H 5 HOH A 119 619 619 HOH TIP . H 5 HOH A 120 620 620 HOH TIP . H 5 HOH A 121 621 621 HOH TIP . H 5 HOH A 122 622 622 HOH TIP . H 5 HOH A 123 623 623 HOH TIP . H 5 HOH A 124 624 624 HOH TIP . H 5 HOH A 125 625 625 HOH TIP . H 5 HOH A 126 626 626 HOH TIP . H 5 HOH A 127 627 627 HOH TIP . H 5 HOH A 128 628 628 HOH TIP . H 5 HOH A 129 629 629 HOH TIP . H 5 HOH A 130 630 630 HOH TIP . H 5 HOH A 131 631 631 HOH TIP . H 5 HOH A 132 632 632 HOH TIP . H 5 HOH A 133 633 633 HOH TIP . H 5 HOH A 134 634 634 HOH TIP . H 5 HOH A 135 635 635 HOH TIP . H 5 HOH A 136 636 636 HOH TIP . H 5 HOH A 137 637 637 HOH TIP . H 5 HOH A 138 638 638 HOH TIP . H 5 HOH A 139 639 639 HOH TIP . H 5 HOH A 140 640 640 HOH TIP . H 5 HOH A 141 641 641 HOH TIP . H 5 HOH A 142 642 642 HOH TIP . H 5 HOH A 143 643 643 HOH TIP . H 5 HOH A 144 645 645 HOH TIP . H 5 HOH A 145 646 646 HOH TIP . H 5 HOH A 146 647 647 HOH TIP . H 5 HOH A 147 648 648 HOH TIP . H 5 HOH A 148 649 649 HOH TIP . H 5 HOH A 149 650 650 HOH TIP . H 5 HOH A 150 651 651 HOH TIP . H 5 HOH A 151 652 652 HOH TIP . H 5 HOH A 152 653 653 HOH TIP . H 5 HOH A 153 654 654 HOH TIP . H 5 HOH A 154 655 655 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 27.822 _atom_site.Cartn_y 48.708 _atom_site.Cartn_z 41.213 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 33.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 405 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #