data_1ZID # _model_server_result.job_id cn61i-CH32DndTPTiSNXXw _model_server_result.datetime_utc '2024-11-29 22:05:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1ZID # _exptl.entry_id 1ZID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 768.519 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZID _cell.length_a 100.53 _cell.length_b 100.53 _cell.length_c 138.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZID _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -50.265 87.061534 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.32 4 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -50.265 87.061534 46.32 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H30 N8 O15 P2' _chem_comp.formula_weight 768.519 _chem_comp.id ZID _chem_comp.mon_nstd_flag . _chem_comp.name 'ISONICOTINIC-ACETYL-NICOTINAMIDE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A ZID doub 376 n n PA O2A ZID sing 377 n n PA O5B ZID sing 378 n n PA O3 ZID sing 379 n n O2A HOA2 ZID sing 380 n n O5B C5B ZID sing 381 n n C5B C4B ZID sing 382 n n C5B H51A ZID sing 383 n n C5B H52A ZID sing 384 n n C4B O4B ZID sing 385 n n C4B C3B ZID sing 386 n n C4B H4B ZID sing 387 n n O4B C1B ZID sing 388 n n C3B O3B ZID sing 389 n n C3B C2B ZID sing 390 n n C3B H3B ZID sing 391 n n O3B HO3A ZID sing 392 n n C2B O2B ZID sing 393 n n C2B C1B ZID sing 394 n n C2B H2B ZID sing 395 n n O2B HO2A ZID sing 396 n n C1B N9A ZID sing 397 n n C1B H1B ZID sing 398 n n N9A C8A ZID sing 399 n y N9A C4A ZID sing 400 n y C8A N7A ZID doub 401 n y C8A H8A ZID sing 402 n n N7A C5A ZID sing 403 n y C5A C6A ZID sing 404 n y C5A C4A ZID doub 405 n y C6A N6A ZID sing 406 n n C6A N1A ZID doub 407 n y N6A H61A ZID sing 408 n n N6A H62A ZID sing 409 n n N1A C2A ZID sing 410 n y C2A N3A ZID doub 411 n y C2A H2A ZID sing 412 n n N3A C4A ZID sing 413 n y O3 PN ZID sing 414 n n PN O1N ZID doub 415 n n PN O2N ZID sing 416 n n PN O5D ZID sing 417 n n O5D C5D ZID sing 418 n n C5D C4D ZID sing 419 n n C5D H51N ZID sing 420 n n C5D H52N ZID sing 421 n n C4D O4D ZID sing 422 n n C4D C3D ZID sing 423 n n C4D H4D ZID sing 424 n n O4D C1D ZID sing 425 n n C3D O3D ZID sing 426 n n C3D C2D ZID sing 427 n n C3D H3D ZID sing 428 n n O3D HO3N ZID sing 429 n n C2D O2D ZID sing 430 n n C2D C1D ZID sing 431 n n C2D H2D ZID sing 432 n n O2D HO2N ZID sing 433 n n C1D N1N ZID sing 434 n n C1D H1D ZID sing 435 n n N1N C2N ZID sing 436 n y N1N C6N ZID doub 437 n y C2N C3N ZID doub 438 n y C2N H2N ZID sing 439 n n C3N C7N ZID sing 440 n n C3N C4N ZID sing 441 n y C7N O7N ZID doub 442 n n C7N N7N ZID sing 443 n n N7N H71N ZID sing 444 n n N7N H72N ZID sing 445 n n C4N C5N ZID doub 446 n y C4N C7Z ZID sing 447 n n C5N C6N ZID sing 448 n y C5N H5N ZID sing 449 n n C6N H6N ZID sing 450 n n C7Z O7Z ZID doub 451 n n C7Z C4Z ZID sing 452 n n N1Z C2Z ZID doub 453 n y N1Z C6Z ZID sing 454 n y C2Z C3Z ZID sing 455 n y C2Z H2Z ZID sing 456 n n C3Z C4Z ZID doub 457 n y C3Z H3Z ZID sing 458 n n C4Z C5Z ZID sing 459 n y C5Z C6Z ZID doub 460 n y C5Z H5Z ZID sing 461 n n C6Z H6Z ZID sing 462 n n # _atom_sites.entry_id 1ZID _atom_sites.fract_transf_matrix[1][1] 0.009947 _atom_sites.fract_transf_matrix[1][2] 0.005743 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZID A 1 300 300 ZID ZID . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . C 3 HOH A 44 444 444 HOH HOH . C 3 HOH A 45 445 445 HOH HOH . C 3 HOH A 46 446 446 HOH HOH . C 3 HOH A 47 447 447 HOH HOH . C 3 HOH A 48 448 448 HOH HOH . C 3 HOH A 49 449 449 HOH HOH . C 3 HOH A 50 450 450 HOH HOH . C 3 HOH A 51 451 451 HOH HOH . C 3 HOH A 52 452 452 HOH HOH . C 3 HOH A 53 453 453 HOH HOH . C 3 HOH A 54 454 454 HOH HOH . C 3 HOH A 55 455 455 HOH HOH . C 3 HOH A 56 456 456 HOH HOH . C 3 HOH A 57 457 457 HOH HOH . C 3 HOH A 58 458 458 HOH HOH . C 3 HOH A 59 459 459 HOH HOH . C 3 HOH A 60 460 460 HOH HOH . C 3 HOH A 61 461 461 HOH HOH . C 3 HOH A 62 462 462 HOH HOH . C 3 HOH A 63 463 463 HOH HOH . C 3 HOH A 64 464 464 HOH HOH . C 3 HOH A 65 465 465 HOH HOH . C 3 HOH A 66 466 466 HOH HOH . C 3 HOH A 67 467 467 HOH HOH . C 3 HOH A 68 468 468 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA ZID . . . B 2 -1.211 34.45 11.31 1 29.85 ? PA ZID 300 A 1 HETATM 2 O O1A ZID . . . B 2 -1.704 33.054 11.081 1 23.77 ? O1A ZID 300 A 1 HETATM 3 O O2A ZID . . . B 2 -0.131 35.015 10.469 1 29.65 ? O2A ZID 300 A 1 HETATM 4 O O5B ZID . . . B 2 -0.645 34.6 12.854 1 28.72 ? O5B ZID 300 A 1 HETATM 5 C C5B ZID . . . B 2 -1.072 33.749 13.971 1 21.31 ? C5B ZID 300 A 1 HETATM 6 C C4B ZID . . . B 2 -0.275 32.544 14.45 1 16.26 ? C4B ZID 300 A 1 HETATM 7 O O4B ZID . . . B 2 -0.971 31.29 14.695 1 17.53 ? O4B ZID 300 A 1 HETATM 8 C C3B ZID . . . B 2 0.939 32.136 13.672 1 11.69 ? C3B ZID 300 A 1 HETATM 9 O O3B ZID . . . B 2 2.01 32.906 14.147 1 11.73 ? O3B ZID 300 A 1 HETATM 10 C C2B ZID . . . B 2 1.169 30.704 14.129 1 15.8 ? C2B ZID 300 A 1 HETATM 11 O O2B ZID . . . B 2 2.511 30.38 14.508 1 12.01 ? O2B ZID 300 A 1 HETATM 12 C C1B ZID . . . B 2 0.148 30.581 15.244 1 17.06 ? C1B ZID 300 A 1 HETATM 13 N N9A ZID . . . B 2 0.145 29.084 15.68 1 25.36 ? N9A ZID 300 A 1 HETATM 14 C C8A ZID . . . B 2 -0.742 28.077 15.535 1 27.3 ? C8A ZID 300 A 1 HETATM 15 N N7A ZID . . . B 2 -0.709 27.234 16.588 1 21.59 ? N7A ZID 300 A 1 HETATM 16 C C5A ZID . . . B 2 0.232 27.734 17.349 1 21.34 ? C5A ZID 300 A 1 HETATM 17 C C6A ZID . . . B 2 0.659 27.255 18.622 1 26.34 ? C6A ZID 300 A 1 HETATM 18 N N6A ZID . . . B 2 0.18 26.264 18.992 1 25.57 ? N6A ZID 300 A 1 HETATM 19 N N1A ZID . . . B 2 1.575 27.977 19.306 1 30.79 ? N1A ZID 300 A 1 HETATM 20 C C2A ZID . . . B 2 2.07 29.147 18.84 1 30.62 ? C2A ZID 300 A 1 HETATM 21 N N3A ZID . . . B 2 1.692 29.655 17.663 1 28.85 ? N3A ZID 300 A 1 HETATM 22 C C4A ZID . . . B 2 0.727 28.928 16.859 1 26.48 ? C4A ZID 300 A 1 HETATM 23 O O3 ZID . . . B 2 -2.523 35.286 10.963 1 28.33 ? O3 ZID 300 A 1 HETATM 24 P PN ZID . . . B 2 -3.118 36.681 11.428 1 39.92 ? PN ZID 300 A 1 HETATM 25 O O1N ZID . . . B 2 -4.151 37.217 10.468 1 30.22 ? O1N ZID 300 A 1 HETATM 26 O O2N ZID . . . B 2 -1.889 37.422 11.754 1 35.58 ? O2N ZID 300 A 1 HETATM 27 O O5D ZID . . . B 2 -3.826 36.266 12.816 1 32.61 ? O5D ZID 300 A 1 HETATM 28 C C5D ZID . . . B 2 -3.458 36.829 14.076 1 29.9 ? C5D ZID 300 A 1 HETATM 29 C C4D ZID . . . B 2 -4.655 36.736 15.022 1 27.2 ? C4D ZID 300 A 1 HETATM 30 O O4D ZID . . . B 2 -5.449 37.872 14.662 1 24.66 ? O4D ZID 300 A 1 HETATM 31 C C3D ZID . . . B 2 -5.554 35.504 14.868 1 25.58 ? C3D ZID 300 A 1 HETATM 32 O O3D ZID . . . B 2 -5.985 34.922 16.094 1 24.8 ? O3D ZID 300 A 1 HETATM 33 C C2D ZID . . . B 2 -6.71 36.054 14.037 1 25.25 ? C2D ZID 300 A 1 HETATM 34 O O2D ZID . . . B 2 -7.984 35.417 13.998 1 23.09 ? O2D ZID 300 A 1 HETATM 35 C C1D ZID . . . B 2 -6.813 37.466 14.522 1 21.72 ? C1D ZID 300 A 1 HETATM 36 N N1N ZID . . . B 2 -7.483 38.295 13.494 1 21.9 ? N1N ZID 300 A 1 HETATM 37 C C2N ZID . . . B 2 -7.08 38.282 12.15 1 21.71 ? C2N ZID 300 A 1 HETATM 38 C C3N ZID . . . B 2 -7.946 38.771 11.172 1 26.72 ? C3N ZID 300 A 1 HETATM 39 C C7N ZID . . . B 2 -7.559 38.833 9.68 1 27.84 ? C7N ZID 300 A 1 HETATM 40 O O7N ZID . . . B 2 -6.7 39.613 9.237 1 20.51 ? O7N ZID 300 A 1 HETATM 41 N N7N ZID . . . B 2 -8.255 37.983 8.923 1 23.82 ? N7N ZID 300 A 1 HETATM 42 C C4N ZID . . . B 2 -9.221 39.238 11.538 1 23.55 ? C4N ZID 300 A 1 HETATM 43 C C5N ZID . . . B 2 -9.507 39.446 12.888 1 24.77 ? C5N ZID 300 A 1 HETATM 44 C C6N ZID . . . B 2 -8.657 38.958 13.874 1 25.17 ? C6N ZID 300 A 1 HETATM 45 C C7Z ZID . . . B 2 -10.206 38.134 11.102 1 19.82 ? C7Z ZID 300 A 1 HETATM 46 O O7Z ZID . . . B 2 -9.781 36.962 11.055 1 24.49 ? O7Z ZID 300 A 1 HETATM 47 N N1Z ZID . . . B 2 -14.325 38.866 10.21 1 6.99 ? N1Z ZID 300 A 1 HETATM 48 C C2Z ZID . . . B 2 -13.537 39.921 10.436 1 5.63 ? C2Z ZID 300 A 1 HETATM 49 C C3Z ZID . . . B 2 -12.192 39.709 10.718 1 10.84 ? C3Z ZID 300 A 1 HETATM 50 C C4Z ZID . . . B 2 -11.674 38.407 10.758 1 10.46 ? C4Z ZID 300 A 1 HETATM 51 C C5Z ZID . . . B 2 -12.519 37.339 10.465 1 2 ? C5Z ZID 300 A 1 HETATM 52 C C6Z ZID . . . B 2 -13.861 37.617 10.183 1 7.38 ? C6Z ZID 300 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 52 #