data_1ZJ5
#
_model_server_result.job_id            cGG9G5Kz-mgn2C0y3deRqA 
_model_server_result.datetime_utc      '2024-11-17 02:38:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zj5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1101}' 
#
_entry.id    1ZJ5 
#
_exptl.entry_id    1ZJ5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZJ5 
_cell.length_a            47.549 
_cell.length_b            70.658 
_cell.length_c            77.627 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZJ5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 122 A TYR 122 1_555 A N SEB 123 A SEB 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale2 A C SEB 123 A SEB 123 1_555 A N LEU 124 A LEU 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1ZJ5 
_atom_sites.fract_transf_matrix[1][1]    0.021031 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014153 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 2719 2719 SO4 SO4 . 
C 2 SO4 A 1 2720 2720 SO4 SO4 . 
D 3 GOL A 1 1101 1101 GOL GOL . 
E 4 HOH A 1 2721 1 HOH HOH . 
E 4 HOH A 2 2722 2 HOH HOH . 
E 4 HOH A 3 2723 3 HOH HOH . 
E 4 HOH A 4 2724 4 HOH HOH . 
E 4 HOH A 5 2725 5 HOH HOH . 
E 4 HOH A 6 2726 6 HOH HOH . 
E 4 HOH A 7 2727 7 HOH HOH . 
E 4 HOH A 8 2728 8 HOH HOH . 
E 4 HOH A 9 2729 9 HOH HOH . 
E 4 HOH A 10 2730 10 HOH HOH . 
E 4 HOH A 11 2731 11 HOH HOH . 
E 4 HOH A 12 2732 12 HOH HOH . 
E 4 HOH A 13 2733 13 HOH HOH . 
E 4 HOH A 14 2734 14 HOH HOH . 
E 4 HOH A 15 2735 15 HOH HOH . 
E 4 HOH A 16 2736 16 HOH HOH . 
E 4 HOH A 17 2737 17 HOH HOH . 
E 4 HOH A 18 2738 18 HOH HOH . 
E 4 HOH A 19 2739 19 HOH HOH . 
E 4 HOH A 20 2740 20 HOH HOH . 
E 4 HOH A 21 2741 21 HOH HOH . 
E 4 HOH A 22 2742 22 HOH HOH . 
E 4 HOH A 23 2743 23 HOH HOH . 
E 4 HOH A 24 2744 24 HOH HOH . 
E 4 HOH A 25 2745 25 HOH HOH . 
E 4 HOH A 26 2746 26 HOH HOH . 
E 4 HOH A 27 2747 27 HOH HOH . 
E 4 HOH A 28 2748 28 HOH HOH . 
E 4 HOH A 29 2749 29 HOH HOH . 
E 4 HOH A 30 2750 30 HOH HOH . 
E 4 HOH A 31 2751 31 HOH HOH . 
E 4 HOH A 32 2752 32 HOH HOH . 
E 4 HOH A 33 2753 33 HOH HOH . 
E 4 HOH A 34 2754 34 HOH HOH . 
E 4 HOH A 35 2755 35 HOH HOH . 
E 4 HOH A 36 2756 36 HOH HOH . 
E 4 HOH A 37 2757 37 HOH HOH . 
E 4 HOH A 38 2758 38 HOH HOH . 
E 4 HOH A 39 2759 39 HOH HOH . 
E 4 HOH A 40 2760 40 HOH HOH . 
E 4 HOH A 41 2761 41 HOH HOH . 
E 4 HOH A 42 2762 42 HOH HOH . 
E 4 HOH A 43 2763 43 HOH HOH . 
E 4 HOH A 44 2764 44 HOH HOH . 
E 4 HOH A 45 2765 45 HOH HOH . 
E 4 HOH A 46 2766 46 HOH HOH . 
E 4 HOH A 47 2767 47 HOH HOH . 
E 4 HOH A 48 2768 48 HOH HOH . 
E 4 HOH A 49 2769 49 HOH HOH . 
E 4 HOH A 50 2770 50 HOH HOH . 
E 4 HOH A 51 2771 51 HOH HOH . 
E 4 HOH A 52 2772 52 HOH HOH . 
E 4 HOH A 53 2773 53 HOH HOH . 
E 4 HOH A 54 2774 54 HOH HOH . 
E 4 HOH A 55 2775 55 HOH HOH . 
E 4 HOH A 56 2776 56 HOH HOH . 
E 4 HOH A 57 2777 57 HOH HOH . 
E 4 HOH A 58 2778 58 HOH HOH . 
E 4 HOH A 59 2779 59 HOH HOH . 
E 4 HOH A 60 2780 60 HOH HOH . 
E 4 HOH A 61 2781 61 HOH HOH . 
E 4 HOH A 62 2782 62 HOH HOH . 
E 4 HOH A 63 2783 63 HOH HOH . 
E 4 HOH A 64 2784 64 HOH HOH . 
E 4 HOH A 65 2785 65 HOH HOH . 
E 4 HOH A 66 2786 66 HOH HOH . 
E 4 HOH A 67 2787 67 HOH HOH . 
E 4 HOH A 68 2788 68 HOH HOH . 
E 4 HOH A 69 2789 69 HOH HOH . 
E 4 HOH A 70 2790 70 HOH HOH . 
E 4 HOH A 71 2791 71 HOH HOH . 
E 4 HOH A 72 2792 72 HOH HOH . 
E 4 HOH A 73 2793 73 HOH HOH . 
E 4 HOH A 74 2794 74 HOH HOH . 
E 4 HOH A 75 2795 75 HOH HOH . 
E 4 HOH A 76 2796 76 HOH HOH . 
E 4 HOH A 77 2797 77 HOH HOH . 
E 4 HOH A 78 2798 78 HOH HOH . 
E 4 HOH A 79 2799 79 HOH HOH . 
E 4 HOH A 80 2800 80 HOH HOH . 
E 4 HOH A 81 2801 81 HOH HOH . 
E 4 HOH A 82 2802 82 HOH HOH . 
E 4 HOH A 83 2803 83 HOH HOH . 
E 4 HOH A 84 2804 84 HOH HOH . 
E 4 HOH A 85 2805 85 HOH HOH . 
E 4 HOH A 86 2806 86 HOH HOH . 
E 4 HOH A 87 2807 87 HOH HOH . 
E 4 HOH A 88 2808 88 HOH HOH . 
E 4 HOH A 89 2809 89 HOH HOH . 
E 4 HOH A 90 2810 90 HOH HOH . 
E 4 HOH A 91 2811 91 HOH HOH . 
E 4 HOH A 92 2812 92 HOH HOH . 
E 4 HOH A 93 2813 93 HOH HOH . 
E 4 HOH A 94 2814 94 HOH HOH . 
E 4 HOH A 95 2815 95 HOH HOH . 
E 4 HOH A 96 2816 96 HOH HOH . 
E 4 HOH A 97 2817 97 HOH HOH . 
E 4 HOH A 98 2818 98 HOH HOH . 
E 4 HOH A 99 2819 99 HOH HOH . 
E 4 HOH A 100 2820 100 HOH HOH . 
E 4 HOH A 101 2821 101 HOH HOH . 
E 4 HOH A 102 2822 102 HOH HOH . 
E 4 HOH A 103 2823 103 HOH HOH . 
E 4 HOH A 104 2824 104 HOH HOH . 
E 4 HOH A 105 2825 105 HOH HOH . 
E 4 HOH A 106 2826 106 HOH HOH . 
E 4 HOH A 107 2827 107 HOH HOH . 
E 4 HOH A 108 2828 108 HOH HOH . 
E 4 HOH A 109 2829 109 HOH HOH . 
E 4 HOH A 110 2830 110 HOH HOH . 
E 4 HOH A 111 2831 111 HOH HOH . 
E 4 HOH A 112 2832 112 HOH HOH . 
E 4 HOH A 113 2833 113 HOH HOH . 
E 4 HOH A 114 2834 114 HOH HOH . 
E 4 HOH A 115 2835 115 HOH HOH . 
E 4 HOH A 116 2836 116 HOH HOH . 
E 4 HOH A 117 2837 117 HOH HOH . 
E 4 HOH A 118 2838 118 HOH HOH . 
E 4 HOH A 119 2839 119 HOH HOH . 
E 4 HOH A 120 2840 120 HOH HOH . 
E 4 HOH A 121 2841 121 HOH HOH . 
E 4 HOH A 122 2842 122 HOH HOH . 
E 4 HOH A 123 2843 123 HOH HOH . 
E 4 HOH A 124 2844 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 4.988 57.912 5.173 1 24.08 ? C1 GOL 1101 A 1 
HETATM 2 O O1 GOL . . . D 3 4.958 58.483 6.519 1 19.71 ? O1 GOL 1101 A 1 
HETATM 3 C C2 GOL . . . D 3 5.044 56.707 5.856 1 29.39 ? C2 GOL 1101 A 1 
HETATM 4 O O2 GOL . . . D 3 6.213 55.946 5.949 1 20.98 ? O2 GOL 1101 A 1 
HETATM 5 C C3 GOL . . . D 3 3.827 55.998 5.445 1 26.44 ? C3 GOL 1101 A 1 
HETATM 6 O O3 GOL . . . D 3 3.612 54.66 5.896 1 19.24 ? O3 GOL 1101 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#