data_1ZJ6 # _model_server_result.job_id R0MQfvr7cNzIUIksHL2Qpw _model_server_result.datetime_utc '2024-11-14 21:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zj6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":190}' # _entry.id 1ZJ6 # _exptl.entry_id 1ZJ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZJ6 _cell.length_a 76.78 _cell.length_b 81.46 _cell.length_c 84.61 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZJ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 A,B,C,D,E 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 -x+1/2,y,-z+1 -1 0 0 0 1 0 0 0 -1 38.39 0 84.61 3 'crystal symmetry operation' 8_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 81.46 42.305 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 164 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 164 _struct_conn.ptnr1_symmetry 7_556 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id O2 _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 189 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.969 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id G3D _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZJ6 _atom_sites.fract_transf_matrix[1][1] 0.013024 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 188 181 SO4 SO4 . C 2 SO4 A 1 189 182 SO4 SO4 . D 3 G3D A 1 190 180 G3D G3D . E 4 HOH A 1 191 1 HOH WAT . E 4 HOH A 2 192 2 HOH WAT . E 4 HOH A 3 193 3 HOH WAT . E 4 HOH A 4 194 4 HOH WAT . E 4 HOH A 5 195 5 HOH WAT . E 4 HOH A 6 196 6 HOH WAT . E 4 HOH A 7 197 7 HOH WAT . E 4 HOH A 8 198 8 HOH WAT . E 4 HOH A 9 199 9 HOH WAT . E 4 HOH A 10 200 10 HOH WAT . E 4 HOH A 11 201 11 HOH WAT . E 4 HOH A 12 202 12 HOH WAT . E 4 HOH A 13 203 13 HOH WAT . E 4 HOH A 14 204 14 HOH WAT . E 4 HOH A 15 205 15 HOH WAT . E 4 HOH A 16 206 16 HOH WAT . E 4 HOH A 17 207 17 HOH WAT . E 4 HOH A 18 208 18 HOH WAT . E 4 HOH A 19 209 19 HOH WAT . E 4 HOH A 20 210 20 HOH WAT . E 4 HOH A 21 211 21 HOH WAT . E 4 HOH A 22 212 22 HOH WAT . E 4 HOH A 23 213 23 HOH WAT . E 4 HOH A 24 214 24 HOH WAT . E 4 HOH A 25 215 25 HOH WAT . E 4 HOH A 26 216 26 HOH WAT . E 4 HOH A 27 217 27 HOH WAT . E 4 HOH A 28 218 28 HOH WAT . E 4 HOH A 29 219 29 HOH WAT . E 4 HOH A 30 220 30 HOH WAT . E 4 HOH A 31 221 31 HOH WAT . E 4 HOH A 32 222 32 HOH WAT . E 4 HOH A 33 223 33 HOH WAT . E 4 HOH A 34 224 34 HOH WAT . E 4 HOH A 35 225 35 HOH WAT . E 4 HOH A 36 226 36 HOH WAT . E 4 HOH A 37 227 37 HOH WAT . E 4 HOH A 38 228 38 HOH WAT . E 4 HOH A 39 229 39 HOH WAT . E 4 HOH A 40 230 40 HOH WAT . E 4 HOH A 41 231 41 HOH WAT . E 4 HOH A 42 232 42 HOH WAT . E 4 HOH A 43 233 43 HOH WAT . E 4 HOH A 44 234 44 HOH WAT . E 4 HOH A 45 235 45 HOH WAT . E 4 HOH A 46 236 46 HOH WAT . E 4 HOH A 47 237 47 HOH WAT . E 4 HOH A 48 238 48 HOH WAT . E 4 HOH A 49 239 49 HOH WAT . E 4 HOH A 50 240 50 HOH WAT . E 4 HOH A 51 241 51 HOH WAT . E 4 HOH A 52 242 52 HOH WAT . E 4 HOH A 53 243 53 HOH WAT . E 4 HOH A 54 244 54 HOH WAT . E 4 HOH A 55 245 55 HOH WAT . E 4 HOH A 56 246 56 HOH WAT . E 4 HOH A 57 247 57 HOH WAT . E 4 HOH A 58 248 58 HOH WAT . E 4 HOH A 59 249 59 HOH WAT . E 4 HOH A 60 250 60 HOH WAT . E 4 HOH A 61 251 61 HOH WAT . E 4 HOH A 62 252 62 HOH WAT . E 4 HOH A 63 253 63 HOH WAT . E 4 HOH A 64 254 64 HOH WAT . E 4 HOH A 65 255 65 HOH WAT . E 4 HOH A 66 256 66 HOH WAT . E 4 HOH A 67 257 67 HOH WAT . E 4 HOH A 68 258 68 HOH WAT . E 4 HOH A 69 259 69 HOH WAT . E 4 HOH A 70 260 70 HOH WAT . E 4 HOH A 71 261 71 HOH WAT . E 4 HOH A 72 262 72 HOH WAT . E 4 HOH A 73 263 73 HOH WAT . E 4 HOH A 74 264 74 HOH WAT . E 4 HOH A 75 265 75 HOH WAT . E 4 HOH A 76 266 76 HOH WAT . E 4 HOH A 77 267 77 HOH WAT . E 4 HOH A 78 268 78 HOH WAT . E 4 HOH A 79 269 79 HOH WAT . E 4 HOH A 80 270 80 HOH WAT . E 4 HOH A 81 271 81 HOH WAT . E 4 HOH A 82 272 82 HOH WAT . E 4 HOH A 83 273 83 HOH WAT . E 4 HOH A 84 274 84 HOH WAT . E 4 HOH A 85 275 85 HOH WAT . E 4 HOH A 86 276 86 HOH WAT . E 4 HOH A 87 277 87 HOH WAT . E 4 HOH A 88 278 88 HOH WAT . E 4 HOH A 89 279 89 HOH WAT . E 4 HOH A 90 280 90 HOH WAT . E 4 HOH A 91 281 91 HOH WAT . E 4 HOH A 92 282 92 HOH WAT . E 4 HOH A 93 283 93 HOH WAT . E 4 HOH A 94 284 94 HOH WAT . E 4 HOH A 95 285 95 HOH WAT . E 4 HOH A 96 286 96 HOH WAT . E 4 HOH A 97 287 97 HOH WAT . E 4 HOH A 98 288 98 HOH WAT . E 4 HOH A 99 289 99 HOH WAT . E 4 HOH A 100 290 100 HOH WAT . E 4 HOH A 101 291 101 HOH WAT . E 4 HOH A 102 292 102 HOH WAT . E 4 HOH A 103 293 103 HOH WAT . E 4 HOH A 104 294 104 HOH WAT . E 4 HOH A 105 295 105 HOH WAT . E 4 HOH A 106 296 106 HOH WAT . E 4 HOH A 107 297 107 HOH WAT . E 4 HOH A 108 298 108 HOH WAT . E 4 HOH A 109 299 109 HOH WAT . E 4 HOH A 110 300 110 HOH WAT . E 4 HOH A 111 301 111 HOH WAT . E 4 HOH A 112 302 112 HOH WAT . E 4 HOH A 113 303 113 HOH WAT . E 4 HOH A 114 304 114 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB G3D . . . D 3 0.276 26.299 34.9 1 27.38 ? PB G3D 190 A 1 HETATM 2 O O1B G3D . . . D 3 0.636 27.734 34.835 1 25.84 ? O1B G3D 190 A 1 HETATM 3 O O2B G3D . . . D 3 0.013 25.727 36.156 1 28.54 ? O2B G3D 190 A 1 HETATM 4 O O3B G3D . . . D 3 -0.962 26.037 33.886 1 25.77 ? O3B G3D 190 A 1 HETATM 5 P PA G3D . . . D 3 2.314 24.171 34.891 1 27.22 ? PA G3D 190 A 1 HETATM 6 O O3A G3D . . . D 3 1.468 25.472 34.311 1 25.13 ? O3A G3D 190 A 1 HETATM 7 O O1A G3D . . . D 3 3.01 24.478 36.175 1 26.17 ? O1A G3D 190 A 1 HETATM 8 O O2A G3D . . . D 3 1.284 23.065 34.961 1 29.45 ? O2A G3D 190 A 1 HETATM 9 O O5' G3D . . . D 3 3.342 23.979 33.749 1 27.41 ? O5' G3D 190 A 1 HETATM 10 C C5' G3D . . . D 3 2.955 23.659 32.383 1 29.78 ? C5' G3D 190 A 1 HETATM 11 C C4' G3D . . . D 3 3.959 22.881 31.661 1 30.12 ? C4' G3D 190 A 1 HETATM 12 O O4' G3D . . . D 3 5.246 23.669 31.599 1 27.37 ? O4' G3D 190 A 1 HETATM 13 C C3' G3D . . . D 3 4.45 21.549 32.338 1 30.78 ? C3' G3D 190 A 1 HETATM 14 O O3' G3D . . . D 3 4.728 20.656 31.199 1 35.55 ? O3' G3D 190 A 1 HETATM 15 C C2' G3D . . . D 3 5.763 21.873 33.087 1 30.02 ? C2' G3D 190 A 1 HETATM 16 O O2' G3D . . . D 3 6.67 20.816 33.452 1 27.84 ? O2' G3D 190 A 1 HETATM 17 C C1' G3D . . . D 3 6.413 22.924 32.152 1 26.84 ? C1' G3D 190 A 1 HETATM 18 N N9 G3D . . . D 3 7.305 23.928 32.797 1 27 ? N9 G3D 190 A 1 HETATM 19 C C8 G3D . . . D 3 6.871 24.671 34.039 1 27 ? C8 G3D 190 A 1 HETATM 20 N N7 G3D . . . D 3 8.073 25.403 34.134 1 25.94 ? N7 G3D 190 A 1 HETATM 21 C C5 G3D . . . D 3 9.058 25.203 33.249 1 25.38 ? C5 G3D 190 A 1 HETATM 22 C C6 G3D . . . D 3 10.375 25.606 32.838 1 25.83 ? C6 G3D 190 A 1 HETATM 23 O O6 G3D . . . D 3 10.983 26.516 33.592 1 21.24 ? O6 G3D 190 A 1 HETATM 24 N N1 G3D . . . D 3 11.039 25.089 31.752 1 24.51 ? N1 G3D 190 A 1 HETATM 25 C C2 G3D . . . D 3 10.337 24.052 30.918 1 25.34 ? C2 G3D 190 A 1 HETATM 26 N N2 G3D . . . D 3 11.139 23.695 29.928 1 24.23 ? N2 G3D 190 A 1 HETATM 27 N N3 G3D . . . D 3 9.155 23.681 31.236 1 25.51 ? N3 G3D 190 A 1 HETATM 28 C C4 G3D . . . D 3 8.539 24.199 32.333 1 26.56 ? C4 G3D 190 A 1 HETATM 29 P P1 G3D . . . D 3 3.944 19.271 30.989 1 40.64 ? P1 G3D 190 A 1 HETATM 30 O O4P G3D . . . D 3 2.517 19.615 30.898 1 38.2 ? O4P G3D 190 A 1 HETATM 31 O O5P G3D . . . D 3 4.372 18.324 32.089 1 38.48 ? O5P G3D 190 A 1 HETATM 32 O O6P G3D . . . D 3 4.481 18.728 29.585 1 38.32 ? O6P G3D 190 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 487 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #