data_1ZJ7 # _model_server_result.job_id X-z-3s8IIHrv5k9CaQ_CZA _model_server_result.datetime_utc '2024-12-26 12:42:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 1ZJ7 # _exptl.entry_id 1ZJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 703.824 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S,3S)-3-[(tert-butoxycarbonyl)amino]-2-hydroxy-4-phenylbutyl}-L-phenylalanyl-L-alpha-glutamyl-L-phenylalaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZJ7 _cell.length_a 62.859 _cell.length_b 62.859 _cell.length_c 83.253 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZJ7 _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 9_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 55.502 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H49 N5 O8' _chem_comp.formula_weight 703.824 _chem_comp.id 0ZT _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S,3S)-3-[(tert-butoxycarbonyl)amino]-2-hydroxy-4-phenylbutyl}-L-phenylalanyl-L-alpha-glutamyl-L-phenylalaninamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C 0ZT doub 1 n n C O2 0ZT sing 2 n n O2 CT 0ZT sing 3 n n CT C1 0ZT sing 4 n n CT C2 0ZT sing 5 n n CT C3 0ZT sing 6 n n C1 H11 0ZT sing 7 n n C1 H12 0ZT sing 8 n n C1 H13 0ZT sing 9 n n C2 H21 0ZT sing 10 n n C2 H22 0ZT sing 11 n n C2 H23 0ZT sing 12 n n C3 H31 0ZT sing 13 n n C3 H32 0ZT sing 14 n n C3 H33 0ZT sing 15 n n N CA 0ZT sing 16 n n N H 0ZT sing 17 n n CA C4 0ZT sing 18 n n CA CB 0ZT sing 19 n n CA HA 0ZT sing 20 n n C4 OS 0ZT sing 21 n n C4 CM 0ZT sing 22 n n C4 HC 0ZT sing 23 n n OS HOS 0ZT sing 24 n n CB CG 0ZT sing 25 n n CB HB1 0ZT sing 26 n n CB HB2 0ZT sing 27 n n CG CD1 0ZT doub 28 n y CG CD2 0ZT sing 29 n y CD1 CE1 0ZT sing 30 n y CD1 HD1 0ZT sing 31 n n CD2 CE2 0ZT doub 32 n y CD2 HD2 0ZT sing 33 n n CE1 CZ 0ZT doub 34 n y CE1 HE1 0ZT sing 35 n n CE2 CZ 0ZT sing 36 n y CE2 HE2 0ZT sing 37 n n CZ HZ 0ZT sing 38 n n CM HM1 0ZT sing 39 n n CM HM2 0ZT sing 40 n n N1 CA1 0ZT sing 41 n n N1 H1 0ZT sing 42 n n CA1 C5 0ZT sing 43 n n CA1 CB1 0ZT sing 44 n n CA1 HA1 0ZT sing 45 n n C5 O 0ZT doub 46 n n CB1 CG1 0ZT sing 47 n n CB1 HB21 0ZT sing 48 n n CB1 HB3 0ZT sing 49 n n CG1 CD11 0ZT doub 50 n y CG1 CD21 0ZT sing 51 n y CD11 CE11 0ZT sing 52 n y CD11 HD11 0ZT sing 53 n n CD21 CE21 0ZT doub 54 n y CD21 HD21 0ZT sing 55 n n CE11 CZ1 0ZT doub 56 n y CE11 HE11 0ZT sing 57 n n CE21 CZ1 0ZT sing 58 n y CE21 HE21 0ZT sing 59 n n CZ1 HZ1 0ZT sing 60 n n N2 CA2 0ZT sing 61 n n N2 H2 0ZT sing 62 n n CA2 C6 0ZT sing 63 n n CA2 CB2 0ZT sing 64 n n CA2 HA2 0ZT sing 65 n n C6 O3 0ZT doub 66 n n CB2 CG2 0ZT sing 67 n n CB2 HB22 0ZT sing 68 n n CB2 HB31 0ZT sing 69 n n CG2 CD 0ZT sing 70 n n CG2 HG2 0ZT sing 71 n n CG2 HG3 0ZT sing 72 n n CD OE1 0ZT doub 73 n n CD OE2 0ZT sing 74 n n OE2 HE22 0ZT sing 75 n n N3 CA3 0ZT sing 76 n n N3 H3 0ZT sing 77 n n CA3 C7 0ZT sing 78 n n CA3 CB3 0ZT sing 79 n n CA3 HA3 0ZT sing 80 n n C7 O4 0ZT doub 81 n n CB3 CG3 0ZT sing 82 n n CB3 HB23 0ZT sing 83 n n CB3 HB32 0ZT sing 84 n n CG3 CD12 0ZT doub 85 n y CG3 CD22 0ZT sing 86 n y CD12 CE12 0ZT sing 87 n y CD12 HD12 0ZT sing 88 n n CD22 CE22 0ZT doub 89 n y CD22 HD22 0ZT sing 90 n n CE12 CZ2 0ZT doub 91 n y CE12 HE12 0ZT sing 92 n n CE22 CZ2 0ZT sing 93 n y CE22 HE23 0ZT sing 94 n n CZ2 HZ2 0ZT sing 95 n n N4 HN1 0ZT sing 96 n n N4 HN2 0ZT sing 97 n n C N 0ZT sing 98 n n CM N1 0ZT sing 99 n n C5 N2 0ZT sing 100 n n C6 N3 0ZT sing 101 n n C7 N4 0ZT sing 102 n n # _atom_sites.entry_id 1ZJ7 _atom_sites.fract_transf_matrix[1][1] 0.015909 _atom_sites.fract_transf_matrix[1][2] 0.009185 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0ZT A 1 201 201 0ZT BOC . C 3 HOH A 1 301 301 HOH HOH . C 3 HOH A 2 302 302 HOH HOH . C 3 HOH A 3 303 303 HOH HOH . C 3 HOH A 4 304 304 HOH HOH . C 3 HOH A 5 305 305 HOH HOH . C 3 HOH A 6 306 306 HOH HOH . C 3 HOH A 7 307 307 HOH HOH . C 3 HOH A 8 308 308 HOH HOH . C 3 HOH A 9 309 309 HOH HOH . C 3 HOH A 10 310 310 HOH HOH . C 3 HOH A 11 311 311 HOH HOH . C 3 HOH A 12 312 312 HOH HOH . C 3 HOH A 13 313 313 HOH HOH . C 3 HOH A 14 314 314 HOH HOH . C 3 HOH A 15 315 315 HOH HOH . C 3 HOH A 16 316 316 HOH HOH . C 3 HOH A 17 317 317 HOH HOH . C 3 HOH A 18 318 318 HOH HOH . C 3 HOH A 19 320 320 HOH HOH . C 3 HOH A 20 321 321 HOH HOH . C 3 HOH A 21 322 322 HOH HOH . C 3 HOH A 22 323 323 HOH HOH . C 3 HOH A 23 324 324 HOH HOH . C 3 HOH A 24 325 325 HOH HOH . C 3 HOH A 25 326 326 HOH HOH . C 3 HOH A 26 327 327 HOH HOH . C 3 HOH A 27 328 328 HOH HOH . C 3 HOH A 28 329 329 HOH HOH . C 3 HOH A 29 330 330 HOH HOH . C 3 HOH A 30 331 331 HOH HOH . C 3 HOH A 31 332 332 HOH HOH . C 3 HOH A 32 333 333 HOH HOH . C 3 HOH A 33 334 334 HOH HOH . C 3 HOH A 34 335 335 HOH HOH . C 3 HOH A 35 336 336 HOH HOH . C 3 HOH A 36 337 337 HOH HOH . C 3 HOH A 37 338 338 HOH HOH . C 3 HOH A 38 339 339 HOH HOH . C 3 HOH A 39 340 340 HOH HOH . C 3 HOH A 40 341 341 HOH HOH . C 3 HOH A 41 342 342 HOH HOH . C 3 HOH A 42 343 343 HOH HOH . C 3 HOH A 43 344 344 HOH HOH . C 3 HOH A 44 345 345 HOH HOH . C 3 HOH A 45 346 346 HOH HOH . C 3 HOH A 46 347 347 HOH HOH . C 3 HOH A 47 348 348 HOH HOH . C 3 HOH A 48 349 349 HOH HOH . C 3 HOH A 49 350 350 HOH HOH . C 3 HOH A 50 351 351 HOH HOH . C 3 HOH A 51 352 352 HOH HOH . C 3 HOH A 52 354 354 HOH HOH . C 3 HOH A 53 355 355 HOH HOH . C 3 HOH A 54 356 356 HOH HOH . C 3 HOH A 55 357 357 HOH HOH . C 3 HOH A 56 358 358 HOH HOH . C 3 HOH A 57 359 359 HOH HOH . C 3 HOH A 58 360 360 HOH HOH . C 3 HOH A 59 361 361 HOH HOH . C 3 HOH A 60 362 362 HOH HOH . C 3 HOH A 61 363 363 HOH HOH . C 3 HOH A 62 364 364 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 0ZT . . . B 2 -7.893 15.499 25.063 0.5 28.74 ? O1 0ZT 201 A 1 HETATM 2 C C 0ZT . . . B 2 -7.942 16.589 24.514 0.5 30.58 ? C 0ZT 201 A 1 HETATM 3 O O2 0ZT . . . B 2 -8.133 16.823 23.15 0.5 25.62 ? O2 0ZT 201 A 1 HETATM 4 C CT 0ZT . . . B 2 -8.78 15.856 22.183 0.5 23.2 ? CT 0ZT 201 A 1 HETATM 5 C C1 0ZT . . . B 2 -8.783 16.556 20.836 0.5 21.22 ? C1 0ZT 201 A 1 HETATM 6 C C2 0ZT . . . B 2 -10.211 15.562 22.638 0.5 23.7 ? C2 0ZT 201 A 1 HETATM 7 C C3 0ZT . . . B 2 -7.95 14.573 22.123 0.5 24.11 ? C3 0ZT 201 A 1 HETATM 8 N N 0ZT . . . B 2 -7.822 17.808 25.147 0.5 34.68 ? N 0ZT 201 A 1 HETATM 9 C CA 0ZT . . . B 2 -7.261 17.972 26.497 0.5 38.28 ? CA 0ZT 201 A 1 HETATM 10 C C4 0ZT . . . B 2 -8.356 18.285 27.559 0.5 39.23 ? C4 0ZT 201 A 1 HETATM 11 O OS 0ZT . . . B 2 -9.254 19.258 27.056 0.5 41.44 ? OS 0ZT 201 A 1 HETATM 12 C CB 0ZT . . . B 2 -6.232 19.113 26.522 0.5 40.96 ? CB 0ZT 201 A 1 HETATM 13 C CG 0ZT . . . B 2 -5.016 18.869 25.672 0.5 44.58 ? CG 0ZT 201 A 1 HETATM 14 C CD1 0ZT . . . B 2 -5.108 18.847 24.287 0.5 45.74 ? CD1 0ZT 201 A 1 HETATM 15 C CD2 0ZT . . . B 2 -3.774 18.663 26.263 0.5 46.3 ? CD2 0ZT 201 A 1 HETATM 16 C CE1 0ZT . . . B 2 -3.983 18.623 23.503 0.5 48.32 ? CE1 0ZT 201 A 1 HETATM 17 C CE2 0ZT . . . B 2 -2.645 18.44 25.489 0.5 46.8 ? CE2 0ZT 201 A 1 HETATM 18 C CZ 0ZT . . . B 2 -2.749 18.419 24.107 0.5 47.34 ? CZ 0ZT 201 A 1 HETATM 19 C CM 0ZT . . . B 2 -9.148 17.018 27.946 0.5 38.23 ? CM 0ZT 201 A 1 HETATM 20 N N1 0ZT . . . B 2 -10.58 17.315 28.034 0.5 36.02 ? N1 0ZT 201 A 1 HETATM 21 C CA1 0ZT . . . B 2 -11.424 16.214 28.516 0.5 34.25 ? CA1 0ZT 201 A 1 HETATM 22 C C5 0ZT . . . B 2 -10.8 15.351 29.624 0.5 30.66 ? C5 0ZT 201 A 1 HETATM 23 O O 0ZT . . . B 2 -10.021 14.444 29.351 0.5 29.58 ? O 0ZT 201 A 1 HETATM 24 C CB1 0ZT . . . B 2 -11.837 15.314 27.345 0.5 33.84 ? CB1 0ZT 201 A 1 HETATM 25 C CG1 0ZT . . . B 2 -12.589 14.082 27.764 0.5 36.13 ? CG1 0ZT 201 A 1 HETATM 26 C CD11 0ZT . . . B 2 -12.278 12.847 27.21 0.5 36.85 ? CD11 0ZT 201 A 1 HETATM 27 C CD21 0ZT . . . B 2 -13.588 14.15 28.733 0.5 36.19 ? CD21 0ZT 201 A 1 HETATM 28 C CE11 0ZT . . . B 2 -12.939 11.701 27.612 0.5 37.05 ? CE11 0ZT 201 A 1 HETATM 29 C CE21 0ZT . . . B 2 -14.261 13.002 29.145 0.5 37.96 ? CE21 0ZT 201 A 1 HETATM 30 C CZ1 0ZT . . . B 2 -13.933 11.774 28.582 0.5 37.81 ? CZ1 0ZT 201 A 1 HETATM 31 N N2 0ZT . . . B 2 -11.172 15.626 30.871 0.5 29.27 ? N2 0ZT 201 A 1 HETATM 32 C CA2 0ZT . . . B 2 -10.658 14.886 32.021 0.5 26.67 ? CA2 0ZT 201 A 1 HETATM 33 C C6 0ZT . . . B 2 -11.788 14.603 33.01 0.5 24.3 ? C6 0ZT 201 A 1 HETATM 34 O O3 0ZT . . . B 2 -12.679 15.432 33.206 0.5 21.56 ? O3 0ZT 201 A 1 HETATM 35 C CB2 0ZT . . . B 2 -9.534 15.696 32.682 0.5 27.28 ? CB2 0ZT 201 A 1 HETATM 36 C CG2 0ZT . . . B 2 -8.929 15.098 33.928 0.5 27.48 ? CG2 0ZT 201 A 1 HETATM 37 C CD 0ZT . . . B 2 -9.797 15.312 35.146 0.5 30.2 ? CD 0ZT 201 A 1 HETATM 38 O OE1 0ZT . . . B 2 -10.51 16.337 35.178 0.5 30.8 ? OE1 0ZT 201 A 1 HETATM 39 O OE2 0ZT . . . B 2 -9.757 14.473 36.074 0.5 32.58 ? OE2 0ZT 201 A 1 HETATM 40 N N3 0ZT . . . B 2 -11.757 13.426 33.624 0.5 24.11 ? N3 0ZT 201 A 1 HETATM 41 C CA3 0ZT . . . B 2 -12.787 13.067 34.581 0.5 25.15 ? CA3 0ZT 201 A 1 HETATM 42 C C7 0ZT . . . B 2 -12.248 12.422 35.854 0.5 25.88 ? C7 0ZT 201 A 1 HETATM 43 O O4 0ZT . . . B 2 -11.283 11.662 35.817 0.5 26.13 ? O4 0ZT 201 A 1 HETATM 44 C CB3 0ZT . . . B 2 -13.811 12.154 33.906 0.5 27.19 ? CB3 0ZT 201 A 1 HETATM 45 C CG3 0ZT . . . B 2 -13.209 10.961 33.212 0.5 30.95 ? CG3 0ZT 201 A 1 HETATM 46 C CD12 0ZT . . . B 2 -12.877 9.817 33.923 0.5 32.28 ? CD12 0ZT 201 A 1 HETATM 47 C CD22 0ZT . . . B 2 -12.996 10.974 31.838 0.5 31.07 ? CD22 0ZT 201 A 1 HETATM 48 C CE12 0ZT . . . B 2 -12.347 8.704 33.275 0.5 33.01 ? CE12 0ZT 201 A 1 HETATM 49 C CE22 0ZT . . . B 2 -12.466 9.867 31.183 0.5 30.91 ? CE22 0ZT 201 A 1 HETATM 50 C CZ2 0ZT . . . B 2 -12.142 8.731 31.899 0.5 30.32 ? CZ2 0ZT 201 A 1 HETATM 51 N N4 0ZT . . . B 2 -12.878 12.728 36.985 0.5 24.92 ? N4 0ZT 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #