data_1ZJ8 # _model_server_result.job_id GaNxz4KbYdGXitz9NkCHHQ _model_server_result.datetime_utc '2024-12-07 12:08:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":556}' # _entry.id 1ZJ8 # _exptl.entry_id 1ZJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZJ8 _cell.length_a 84.257 _cell.length_b 115.355 _cell.length_c 114.697 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE2 TYR 80 A TYR 69 1_555 A SG CYS 172 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? covale ? covale2 B CE2 TYR 80 B TYR 69 1_555 B SG CYS 172 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.629 ? metalc ? metalc1 A SG CYS 428 A CYS 417 1_555 D FE1 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.925 ? metalc ? metalc2 A SG CYS 434 A CYS 423 1_555 D FE2 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.796 ? metalc ? metalc3 A SG CYS 474 A CYS 463 1_555 D FE3 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.799 ? metalc ? metalc4 A SG CYS 478 A CYS 467 1_555 D FE4 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.555 ? metalc ? metalc5 B SG CYS 428 B CYS 417 1_555 G FE1 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.91 ? metalc ? metalc6 B SG CYS 434 B CYS 423 1_555 G FE2 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.793 ? metalc ? metalc7 B SG CYS 474 B CYS 463 1_555 G FE3 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.672 ? metalc ? metalc8 B SG CYS 478 B CYS 467 1_555 G FE4 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.65 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 1ZJ8 _atom_sites.fract_transf_matrix[1][1] 0.011868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 558 558 CL CL . D 3 SF4 A 1 556 556 SF4 FS4 . E 4 SRM A 1 557 557 SRM SRM . F 2 CL B 1 1558 1558 CL CL . G 3 SF4 B 1 1556 1556 SF4 FS4 . H 4 SRM B 1 1557 1557 SRM SRM . I 5 HOH A 1 602 602 HOH HOH . I 5 HOH A 2 603 603 HOH HOH . I 5 HOH A 3 604 604 HOH HOH . I 5 HOH A 4 605 605 HOH HOH . I 5 HOH A 5 610 610 HOH HOH . I 5 HOH A 6 611 611 HOH HOH . I 5 HOH A 7 612 612 HOH HOH . I 5 HOH A 8 613 613 HOH HOH . I 5 HOH A 9 614 614 HOH HOH . I 5 HOH A 10 615 615 HOH HOH . I 5 HOH A 11 616 616 HOH HOH . I 5 HOH A 12 617 617 HOH HOH . I 5 HOH A 13 618 618 HOH HOH . I 5 HOH A 14 619 619 HOH HOH . I 5 HOH A 15 620 620 HOH HOH . J 5 HOH B 1 600 600 HOH HOH . J 5 HOH B 2 601 601 HOH HOH . J 5 HOH B 3 606 606 HOH HOH . J 5 HOH B 4 607 607 HOH HOH . J 5 HOH B 5 608 608 HOH HOH . J 5 HOH B 6 609 609 HOH HOH . J 5 HOH B 7 621 621 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 3 12.005 23.887 48.123 1 46.5 ? FE1 SF4 556 A 1 HETATM 2 FE FE2 SF4 . . . D 3 14.047 24.442 46.391 1 44.88 ? FE2 SF4 556 A 1 HETATM 3 FE FE3 SF4 . . . D 3 14.566 23.265 48.807 1 45.72 ? FE3 SF4 556 A 1 HETATM 4 FE FE4 SF4 . . . D 3 13.42 21.955 46.705 1 45.58 ? FE4 SF4 556 A 1 HETATM 5 S S1 SF4 . . . D 3 15.566 22.785 46.799 1 47.08 ? S1 SF4 556 A 1 HETATM 6 S S2 SF4 . . . D 3 12.724 21.873 48.925 1 48.81 ? S2 SF4 556 A 1 HETATM 7 S S3 SF4 . . . D 3 12.009 23.541 45.838 1 46.89 ? S3 SF4 556 A 1 HETATM 8 S S4 SF4 . . . D 3 13.722 25.38 48.49 1 50.98 ? S4 SF4 556 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 8 #