data_1ZJ9 # _model_server_result.job_id 2f7Drq8ZIsvhNC1KqPOXgQ _model_server_result.datetime_utc '2024-12-26 21:25:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zj9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":556}' # _entry.id 1ZJ9 # _exptl.entry_id 1ZJ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.22 _cell.angle_gamma 90 _cell.entry_id 1ZJ9 _cell.length_a 59.983 _cell.length_b 83.307 _cell.length_c 108.801 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZJ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE1 TYR 80 A TYR 69 1_555 A SG CYS 172 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? covale ? covale2 B CE1 TYR 80 B TYR 69 1_555 B SG CYS 172 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc1 A SG CYS 428 A CYS 417 1_555 D FE1 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.896 ? metalc ? metalc2 A SG CYS 434 A CYS 423 1_555 D FE2 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.64 ? metalc ? metalc3 A SG CYS 474 A CYS 463 1_555 D FE3 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.617 ? metalc ? metalc4 A SG CYS 478 A CYS 467 1_555 D FE4 SF4 . A SF4 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.591 ? metalc ? metalc5 B SG CYS 428 B CYS 417 1_555 G FE1 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.929 ? metalc ? metalc6 B SG CYS 434 B CYS 423 1_555 G FE2 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.48 ? metalc ? metalc7 B SG CYS 474 B CYS 463 1_555 G FE3 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.587 ? metalc ? metalc8 B SG CYS 478 B CYS 467 1_555 G FE4 SF4 . B SF4 1556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.767 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 1ZJ9 _atom_sites.fract_transf_matrix[1][1] 0.016671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003612 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 570 570 CL CL . D 3 SF4 A 1 556 556 SF4 FS4 . E 4 SRM A 1 569 569 SRM SRM . F 2 CL B 1 1570 570 CL CL . G 3 SF4 B 1 1556 556 SF4 FS4 . H 4 SRM B 1 1569 569 SRM SRM . I 5 HOH A 1 600 600 HOH HOH . I 5 HOH A 2 601 601 HOH HOH . I 5 HOH A 3 602 602 HOH HOH . I 5 HOH A 4 603 603 HOH HOH . I 5 HOH A 5 604 604 HOH HOH . I 5 HOH A 6 605 605 HOH HOH . I 5 HOH A 7 608 608 HOH HOH . I 5 HOH A 8 609 609 HOH HOH . I 5 HOH A 9 610 610 HOH HOH . I 5 HOH A 10 611 611 HOH HOH . I 5 HOH A 11 612 612 HOH HOH . I 5 HOH A 12 613 613 HOH HOH . I 5 HOH A 13 614 614 HOH HOH . J 5 HOH B 1 606 606 HOH HOH . J 5 HOH B 2 607 607 HOH HOH . J 5 HOH B 3 615 615 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . D 3 21.679 13.435 13.758 1 21.97 ? FE1 SF4 556 A 1 HETATM 2 FE FE2 SF4 . . . D 3 22.87 11.33 14.793 1 19.65 ? FE2 SF4 556 A 1 HETATM 3 FE FE3 SF4 . . . D 3 22.165 13.39 16.375 1 21.47 ? FE3 SF4 556 A 1 HETATM 4 FE FE4 SF4 . . . D 3 20.21 11.793 15.384 1 20.6 ? FE4 SF4 556 A 1 HETATM 5 S S1 SF4 . . . D 3 21.791 11.187 16.865 1 23.7 ? S1 SF4 556 A 1 HETATM 6 S S2 SF4 . . . D 3 20.222 14.081 15.406 1 20.84 ? S2 SF4 556 A 1 HETATM 7 S S3 SF4 . . . D 3 21.118 11.23 13.356 1 23.98 ? S3 SF4 556 A 1 HETATM 8 S S4 SF4 . . . D 3 23.767 13.404 14.696 1 20.14 ? S4 SF4 556 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #