data_1ZJI # _model_server_result.job_id B7iCsu7B4YyJVKoQeMWbBQ _model_server_result.datetime_utc '2024-11-27 16:54:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1268}' # _entry.id 1ZJI # _exptl.entry_id 1ZJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZJI _cell.length_a 84.741 _cell.length_b 84.741 _cell.length_c 160.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 1011 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc2 A NE2 HIS 185 A HIS 1185 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A OE2 GLU 222 A GLU 1222 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A OE1 GLU 222 A GLU 1222 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc5 A OD1 ASP 233 A ASP 1233 1_555 D CD CD . A CD 1270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 B SG CYS 11 B CYS 2011 1_555 G CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc7 B NE2 HIS 185 B HIS 2185 1_555 G CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 B OE1 GLU 222 B GLU 2222 1_555 G CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc9 B OE2 GLU 222 B GLU 2222 1_555 G CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc10 B OD2 ASP 233 B ASP 2233 1_555 G CD CD . B CD 2270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 2PG _chem_comp.mon_nstd_flag . _chem_comp.name '2-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2PG sing 1 n n C1 O1 2PG doub 2 n n C1 O2 2PG sing 3 n n C2 C3 2PG sing 4 n n C2 O1P 2PG sing 5 n n C2 H2 2PG sing 6 n n C3 O3 2PG sing 7 n n C3 H31 2PG sing 8 n n C3 H32 2PG sing 9 n n P O1P 2PG sing 10 n n P O2P 2PG doub 11 n n P O3P 2PG sing 12 n n P O4P 2PG sing 13 n n O2 HO2 2PG sing 14 n n O3 H3 2PG sing 15 n n O3P HOP3 2PG sing 16 n n O4P HOP4 2PG sing 17 n n # _atom_sites.entry_id 1ZJI _atom_sites.fract_transf_matrix[1][1] 0.011801 _atom_sites.fract_transf_matrix[1][2] 0.006813 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006227 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R5P A 1 1269 1269 R5P R5P . D 3 CD A 1 1270 1270 CD CD . E 4 2PG A 1 1268 1268 2PG 2PG . F 5 PO4 B 1 2269 2269 PO4 PO4 . G 3 CD B 1 2270 2270 CD CD . H 4 2PG B 1 2268 2268 2PG 2PG . I 6 HOH A 1 3001 3001 HOH HOH . I 6 HOH A 2 3004 3004 HOH HOH . I 6 HOH A 3 3005 3005 HOH HOH . I 6 HOH A 4 3006 3006 HOH HOH . I 6 HOH A 5 3008 3008 HOH HOH . I 6 HOH A 6 3010 3010 HOH HOH . I 6 HOH A 7 3014 3014 HOH HOH . I 6 HOH A 8 3016 3016 HOH HOH . I 6 HOH A 9 3018 3018 HOH HOH . I 6 HOH A 10 3019 3019 HOH HOH . I 6 HOH A 11 3020 3020 HOH HOH . I 6 HOH A 12 3022 3022 HOH HOH . I 6 HOH A 13 3023 3023 HOH HOH . I 6 HOH A 14 3024 3024 HOH HOH . I 6 HOH A 15 3026 3026 HOH HOH . I 6 HOH A 16 3027 3027 HOH HOH . I 6 HOH A 17 3029 3029 HOH HOH . I 6 HOH A 18 3031 3031 HOH HOH . I 6 HOH A 19 3035 3035 HOH HOH . I 6 HOH A 20 3036 3036 HOH HOH . I 6 HOH A 21 3038 3038 HOH HOH . I 6 HOH A 22 3041 3041 HOH HOH . I 6 HOH A 23 3042 3042 HOH HOH . I 6 HOH A 24 3043 3043 HOH HOH . I 6 HOH A 25 3046 3046 HOH HOH . I 6 HOH A 26 3048 3048 HOH HOH . I 6 HOH A 27 3049 3049 HOH HOH . I 6 HOH A 28 3051 3051 HOH HOH . I 6 HOH A 29 3052 3052 HOH HOH . I 6 HOH A 30 3054 3054 HOH HOH . I 6 HOH A 31 3055 3055 HOH HOH . I 6 HOH A 32 3056 3056 HOH HOH . I 6 HOH A 33 3057 3057 HOH HOH . I 6 HOH A 34 3058 3058 HOH HOH . I 6 HOH A 35 3059 3059 HOH HOH . I 6 HOH A 36 3062 3062 HOH HOH . I 6 HOH A 37 3063 3063 HOH HOH . I 6 HOH A 38 3064 3064 HOH HOH . I 6 HOH A 39 3065 3065 HOH HOH . I 6 HOH A 40 3066 3066 HOH HOH . I 6 HOH A 41 3070 3070 HOH HOH . I 6 HOH A 42 3071 3071 HOH HOH . I 6 HOH A 43 3073 3073 HOH HOH . I 6 HOH A 44 3075 3075 HOH HOH . I 6 HOH A 45 3076 3076 HOH HOH . I 6 HOH A 46 3079 3079 HOH HOH . I 6 HOH A 47 3080 3080 HOH HOH . I 6 HOH A 48 3081 3081 HOH HOH . I 6 HOH A 49 3082 3082 HOH HOH . I 6 HOH A 50 3083 3083 HOH HOH . I 6 HOH A 51 3085 3085 HOH HOH . I 6 HOH A 52 3086 3086 HOH HOH . I 6 HOH A 53 3087 3087 HOH HOH . I 6 HOH A 54 3090 3090 HOH HOH . I 6 HOH A 55 3093 3093 HOH HOH . I 6 HOH A 56 3094 3094 HOH HOH . I 6 HOH A 57 3095 3095 HOH HOH . I 6 HOH A 58 3098 3098 HOH HOH . I 6 HOH A 59 3102 3102 HOH HOH . I 6 HOH A 60 3103 3103 HOH HOH . I 6 HOH A 61 3104 3104 HOH HOH . I 6 HOH A 62 3107 3107 HOH HOH . I 6 HOH A 63 3109 3109 HOH HOH . I 6 HOH A 64 3110 3110 HOH HOH . J 6 HOH B 1 3002 3002 HOH HOH . J 6 HOH B 2 3003 3003 HOH HOH . J 6 HOH B 3 3007 3007 HOH HOH . J 6 HOH B 4 3009 3009 HOH HOH . J 6 HOH B 5 3011 3011 HOH HOH . J 6 HOH B 6 3012 3012 HOH HOH . J 6 HOH B 7 3013 3013 HOH HOH . J 6 HOH B 8 3015 3015 HOH HOH . J 6 HOH B 9 3017 3017 HOH HOH . J 6 HOH B 10 3021 3021 HOH HOH . J 6 HOH B 11 3025 3025 HOH HOH . J 6 HOH B 12 3028 3028 HOH HOH . J 6 HOH B 13 3030 3030 HOH HOH . J 6 HOH B 14 3032 3032 HOH HOH . J 6 HOH B 15 3033 3033 HOH HOH . J 6 HOH B 16 3034 3034 HOH HOH . J 6 HOH B 17 3037 3037 HOH HOH . J 6 HOH B 18 3039 3039 HOH HOH . J 6 HOH B 19 3040 3040 HOH HOH . J 6 HOH B 20 3044 3044 HOH HOH . J 6 HOH B 21 3045 3045 HOH HOH . J 6 HOH B 22 3047 3047 HOH HOH . J 6 HOH B 23 3050 3050 HOH HOH . J 6 HOH B 24 3053 3053 HOH HOH . J 6 HOH B 25 3060 3060 HOH HOH . J 6 HOH B 26 3061 3061 HOH HOH . J 6 HOH B 27 3067 3067 HOH HOH . J 6 HOH B 28 3068 3068 HOH HOH . J 6 HOH B 29 3069 3069 HOH HOH . J 6 HOH B 30 3072 3072 HOH HOH . J 6 HOH B 31 3074 3074 HOH HOH . J 6 HOH B 32 3077 3077 HOH HOH . J 6 HOH B 33 3078 3078 HOH HOH . J 6 HOH B 34 3084 3084 HOH HOH . J 6 HOH B 35 3088 3088 HOH HOH . J 6 HOH B 36 3089 3089 HOH HOH . J 6 HOH B 37 3091 3091 HOH HOH . J 6 HOH B 38 3092 3092 HOH HOH . J 6 HOH B 39 3096 3096 HOH HOH . J 6 HOH B 40 3097 3097 HOH HOH . J 6 HOH B 41 3099 3099 HOH HOH . J 6 HOH B 42 3100 3100 HOH HOH . J 6 HOH B 43 3101 3101 HOH HOH . J 6 HOH B 44 3105 3105 HOH HOH . J 6 HOH B 45 3106 3106 HOH HOH . J 6 HOH B 46 3108 3108 HOH HOH . J 6 HOH B 47 3111 3111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2PG . . . E 4 32.528 51.355 22.393 1 70.09 ? C1 2PG 1268 A 1 HETATM 2 C C2 2PG . . . E 4 33.347 50.242 21.676 1 69.63 ? C2 2PG 1268 A 1 HETATM 3 C C3 2PG . . . E 4 32.883 48.868 22.168 1 70.58 ? C3 2PG 1268 A 1 HETATM 4 P P 2PG . . . E 4 32.535 49.4 19.177 1 63.93 ? P 2PG 1268 A 1 HETATM 5 O O1 2PG . . . E 4 33.303 52.193 23.019 1 68.8 ? O1 2PG 1268 A 1 HETATM 6 O O2 2PG . . . E 4 31.236 51.367 22.329 1 68.69 ? O2 2PG 1268 A 1 HETATM 7 O O3 2PG . . . E 4 32.959 48.607 23.547 1 74.26 ? O3 2PG 1268 A 1 HETATM 8 O O1P 2PG . . . E 4 33.238 50.431 20.214 1 69.02 ? O1P 2PG 1268 A 1 HETATM 9 O O2P 2PG . . . E 4 33.248 48.084 19.299 1 65.26 ? O2P 2PG 1268 A 1 HETATM 10 O O3P 2PG . . . E 4 31.094 49.274 19.546 1 65.27 ? O3P 2PG 1268 A 1 HETATM 11 O O4P 2PG . . . E 4 32.662 49.923 17.827 1 66.65 ? O4P 2PG 1268 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #