data_1ZK5 # _model_server_result.job_id d_FhbQlOnbd-Z_qERViing _model_server_result.datetime_utc '2025-07-21 14:13:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zk5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1ZK5 # _exptl.entry_id 1ZK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.542 _cell.angle_gamma 90 _cell.entry_id 1ZK5 _cell.length_a 73.715 _cell.length_b 41.959 _cell.length_c 53.422 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 53 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 53 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 110 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 110 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1ZK5 _atom_sites.fract_transf_matrix[1][1] 0.013566 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001796 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 301 1 NAG NAG . C 3 HOH A 1 302 1 HOH WAT . C 3 HOH A 2 303 2 HOH WAT . C 3 HOH A 3 304 3 HOH WAT . C 3 HOH A 4 305 4 HOH WAT . C 3 HOH A 5 306 5 HOH WAT . C 3 HOH A 6 307 6 HOH WAT . C 3 HOH A 7 308 7 HOH WAT . C 3 HOH A 8 309 8 HOH WAT . C 3 HOH A 9 310 9 HOH WAT . C 3 HOH A 10 311 10 HOH WAT . C 3 HOH A 11 312 11 HOH WAT . C 3 HOH A 12 313 12 HOH WAT . C 3 HOH A 13 314 13 HOH WAT . C 3 HOH A 14 315 14 HOH WAT . C 3 HOH A 15 316 15 HOH WAT . C 3 HOH A 16 317 16 HOH WAT . C 3 HOH A 17 318 17 HOH WAT . C 3 HOH A 18 319 18 HOH WAT . C 3 HOH A 19 320 19 HOH WAT . C 3 HOH A 20 321 20 HOH WAT . C 3 HOH A 21 322 21 HOH WAT . C 3 HOH A 22 323 22 HOH WAT . C 3 HOH A 23 324 23 HOH WAT . C 3 HOH A 24 325 24 HOH WAT . C 3 HOH A 25 326 25 HOH WAT . C 3 HOH A 26 327 26 HOH WAT . C 3 HOH A 27 328 27 HOH WAT . C 3 HOH A 28 329 28 HOH WAT . C 3 HOH A 29 330 29 HOH WAT . C 3 HOH A 30 331 30 HOH WAT . C 3 HOH A 31 332 31 HOH WAT . C 3 HOH A 32 333 32 HOH WAT . C 3 HOH A 33 334 33 HOH WAT . C 3 HOH A 34 335 34 HOH WAT . C 3 HOH A 35 336 35 HOH WAT . C 3 HOH A 36 337 36 HOH WAT . C 3 HOH A 37 338 37 HOH WAT . C 3 HOH A 38 339 38 HOH WAT . C 3 HOH A 39 340 39 HOH WAT . C 3 HOH A 40 341 40 HOH WAT . C 3 HOH A 41 342 41 HOH WAT . C 3 HOH A 42 343 42 HOH WAT . C 3 HOH A 43 344 43 HOH WAT . C 3 HOH A 44 345 44 HOH WAT . C 3 HOH A 45 346 45 HOH WAT . C 3 HOH A 46 347 46 HOH WAT . C 3 HOH A 47 348 47 HOH WAT . C 3 HOH A 48 349 48 HOH WAT . C 3 HOH A 49 350 49 HOH WAT . C 3 HOH A 50 351 50 HOH WAT . C 3 HOH A 51 352 51 HOH WAT . C 3 HOH A 52 353 52 HOH WAT . C 3 HOH A 53 354 53 HOH WAT . C 3 HOH A 54 355 54 HOH WAT . C 3 HOH A 55 356 55 HOH WAT . C 3 HOH A 56 357 56 HOH WAT . C 3 HOH A 57 358 57 HOH WAT . C 3 HOH A 58 359 58 HOH WAT . C 3 HOH A 59 360 59 HOH WAT . C 3 HOH A 60 361 60 HOH WAT . C 3 HOH A 61 362 61 HOH WAT . C 3 HOH A 62 363 62 HOH WAT . C 3 HOH A 63 364 63 HOH WAT . C 3 HOH A 64 365 64 HOH WAT . C 3 HOH A 65 366 65 HOH WAT . C 3 HOH A 66 367 66 HOH WAT . C 3 HOH A 67 368 67 HOH WAT . C 3 HOH A 68 369 68 HOH WAT . C 3 HOH A 69 370 69 HOH WAT . C 3 HOH A 70 371 70 HOH WAT . C 3 HOH A 71 372 71 HOH WAT . C 3 HOH A 72 373 72 HOH WAT . C 3 HOH A 73 374 73 HOH WAT . C 3 HOH A 74 375 74 HOH WAT . C 3 HOH A 75 376 75 HOH WAT . C 3 HOH A 76 377 76 HOH WAT . C 3 HOH A 77 378 77 HOH WAT . C 3 HOH A 78 379 78 HOH WAT . C 3 HOH A 79 380 79 HOH WAT . C 3 HOH A 80 381 80 HOH WAT . C 3 HOH A 81 382 81 HOH WAT . C 3 HOH A 82 383 82 HOH WAT . C 3 HOH A 83 384 83 HOH WAT . C 3 HOH A 84 385 84 HOH WAT . C 3 HOH A 85 386 85 HOH WAT . C 3 HOH A 86 387 86 HOH WAT . C 3 HOH A 87 388 87 HOH WAT . C 3 HOH A 88 389 88 HOH WAT . C 3 HOH A 89 390 89 HOH WAT . C 3 HOH A 90 391 90 HOH WAT . C 3 HOH A 91 392 91 HOH WAT . C 3 HOH A 92 393 92 HOH WAT . C 3 HOH A 93 394 93 HOH WAT . C 3 HOH A 94 395 94 HOH WAT . C 3 HOH A 95 396 95 HOH WAT . C 3 HOH A 96 397 96 HOH WAT . C 3 HOH A 97 398 97 HOH WAT . C 3 HOH A 98 399 98 HOH WAT . C 3 HOH A 99 400 99 HOH WAT . C 3 HOH A 100 401 100 HOH WAT . C 3 HOH A 101 402 101 HOH WAT . C 3 HOH A 102 403 102 HOH WAT . C 3 HOH A 103 404 103 HOH WAT . C 3 HOH A 104 405 104 HOH WAT . C 3 HOH A 105 406 105 HOH WAT . C 3 HOH A 106 407 106 HOH WAT . C 3 HOH A 107 408 107 HOH WAT . C 3 HOH A 108 409 108 HOH WAT . C 3 HOH A 109 410 109 HOH WAT . C 3 HOH A 110 411 110 HOH WAT . C 3 HOH A 111 412 111 HOH WAT . C 3 HOH A 112 413 112 HOH WAT . C 3 HOH A 113 414 113 HOH WAT . C 3 HOH A 114 415 114 HOH WAT . C 3 HOH A 115 416 115 HOH WAT . C 3 HOH A 116 417 116 HOH WAT . C 3 HOH A 117 418 117 HOH WAT . C 3 HOH A 118 419 118 HOH WAT . C 3 HOH A 119 420 119 HOH WAT . C 3 HOH A 120 421 120 HOH WAT . C 3 HOH A 121 422 121 HOH WAT . C 3 HOH A 122 423 122 HOH WAT . C 3 HOH A 123 424 123 HOH WAT . C 3 HOH A 124 425 124 HOH WAT . C 3 HOH A 125 426 125 HOH WAT . C 3 HOH A 126 427 126 HOH WAT . C 3 HOH A 127 428 127 HOH WAT . C 3 HOH A 128 429 128 HOH WAT . C 3 HOH A 129 430 129 HOH WAT . C 3 HOH A 130 431 130 HOH WAT . C 3 HOH A 131 432 131 HOH WAT . C 3 HOH A 132 433 132 HOH WAT . C 3 HOH A 133 434 133 HOH WAT . C 3 HOH A 134 435 134 HOH WAT . C 3 HOH A 135 436 135 HOH WAT . C 3 HOH A 136 437 136 HOH WAT . C 3 HOH A 137 438 137 HOH WAT . C 3 HOH A 138 439 138 HOH WAT . C 3 HOH A 139 440 139 HOH WAT . C 3 HOH A 140 441 140 HOH WAT . C 3 HOH A 141 442 141 HOH WAT . C 3 HOH A 142 443 142 HOH WAT . C 3 HOH A 143 444 143 HOH WAT . C 3 HOH A 144 445 144 HOH WAT . C 3 HOH A 145 446 145 HOH WAT . C 3 HOH A 146 447 146 HOH WAT . C 3 HOH A 147 448 147 HOH WAT . C 3 HOH A 148 449 148 HOH WAT . C 3 HOH A 149 450 149 HOH WAT . C 3 HOH A 150 451 150 HOH WAT . C 3 HOH A 151 452 151 HOH WAT . C 3 HOH A 152 453 152 HOH WAT . C 3 HOH A 153 454 153 HOH WAT . C 3 HOH A 154 455 154 HOH WAT . C 3 HOH A 155 456 155 HOH WAT . C 3 HOH A 156 457 156 HOH WAT . C 3 HOH A 157 458 157 HOH WAT . C 3 HOH A 158 459 158 HOH WAT . C 3 HOH A 159 460 159 HOH WAT . C 3 HOH A 160 461 160 HOH WAT . C 3 HOH A 161 462 161 HOH WAT . C 3 HOH A 162 463 162 HOH WAT . C 3 HOH A 163 464 163 HOH WAT . C 3 HOH A 164 465 164 HOH WAT . C 3 HOH A 165 466 165 HOH WAT . C 3 HOH A 166 467 166 HOH WAT . C 3 HOH A 167 468 167 HOH WAT . C 3 HOH A 168 469 168 HOH WAT . C 3 HOH A 169 470 169 HOH WAT . C 3 HOH A 170 471 170 HOH WAT . C 3 HOH A 171 472 171 HOH WAT . C 3 HOH A 172 473 172 HOH WAT . C 3 HOH A 173 474 173 HOH WAT . C 3 HOH A 174 475 174 HOH WAT . C 3 HOH A 175 476 175 HOH WAT . C 3 HOH A 176 477 176 HOH WAT . C 3 HOH A 177 478 177 HOH WAT . C 3 HOH A 178 479 178 HOH WAT . C 3 HOH A 179 480 179 HOH WAT . C 3 HOH A 180 481 180 HOH WAT . C 3 HOH A 181 482 181 HOH WAT . C 3 HOH A 182 483 182 HOH WAT . C 3 HOH A 183 484 183 HOH WAT . C 3 HOH A 184 485 184 HOH WAT . C 3 HOH A 185 486 185 HOH WAT . C 3 HOH A 186 487 186 HOH WAT . C 3 HOH A 187 488 187 HOH WAT . C 3 HOH A 188 489 188 HOH WAT . C 3 HOH A 189 490 189 HOH WAT . C 3 HOH A 190 491 190 HOH WAT . C 3 HOH A 191 492 191 HOH WAT . C 3 HOH A 192 493 192 HOH WAT . C 3 HOH A 193 494 193 HOH WAT . C 3 HOH A 194 495 194 HOH WAT . C 3 HOH A 195 496 195 HOH WAT . C 3 HOH A 196 497 196 HOH WAT . C 3 HOH A 197 498 197 HOH WAT . C 3 HOH A 198 499 198 HOH WAT . C 3 HOH A 199 500 199 HOH WAT . C 3 HOH A 200 501 200 HOH WAT . C 3 HOH A 201 502 201 HOH WAT . C 3 HOH A 202 503 202 HOH WAT . C 3 HOH A 203 504 203 HOH WAT . C 3 HOH A 204 505 204 HOH WAT . C 3 HOH A 205 506 205 HOH WAT . C 3 HOH A 206 507 206 HOH WAT . C 3 HOH A 207 508 207 HOH WAT . C 3 HOH A 208 509 208 HOH WAT . C 3 HOH A 209 510 209 HOH WAT . C 3 HOH A 210 511 210 HOH WAT . C 3 HOH A 211 512 211 HOH WAT . C 3 HOH A 212 513 212 HOH WAT . C 3 HOH A 213 514 213 HOH WAT . C 3 HOH A 214 515 214 HOH WAT . C 3 HOH A 215 516 215 HOH WAT . C 3 HOH A 216 517 216 HOH WAT . C 3 HOH A 217 518 217 HOH WAT . C 3 HOH A 218 519 218 HOH WAT . C 3 HOH A 219 520 219 HOH WAT . C 3 HOH A 220 521 220 HOH WAT . C 3 HOH A 221 522 221 HOH WAT . C 3 HOH A 222 523 222 HOH WAT . C 3 HOH A 223 524 223 HOH WAT . C 3 HOH A 224 525 224 HOH WAT . C 3 HOH A 225 526 225 HOH WAT . C 3 HOH A 226 527 226 HOH WAT . C 3 HOH A 227 528 227 HOH WAT . C 3 HOH A 228 529 228 HOH WAT . C 3 HOH A 229 530 229 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -6.555 0.677 -0.147 1 8.79 ? C1 NAG 301 A 1 HETATM 2 C C2 NAG . . . B 2 -5.376 -0.204 0.194 1 9.42 ? C2 NAG 301 A 1 HETATM 3 C C3 NAG . . . B 2 -5.533 -0.39 1.693 1 8.08 ? C3 NAG 301 A 1 HETATM 4 C C4 NAG . . . B 2 -5.192 0.952 2.306 1 8.04 ? C4 NAG 301 A 1 HETATM 5 C C5 NAG . . . B 2 -6.162 2.028 1.774 1 7.49 ? C5 NAG 301 A 1 HETATM 6 C C6 NAG . . . B 2 -5.726 3.436 2.139 1 8.59 ? C6 NAG 301 A 1 HETATM 7 C C7 NAG . . . B 2 -6.107 -2.443 -1.214 1 10.25 ? C7 NAG 301 A 1 HETATM 8 C C8 NAG . . . B 2 -6.639 -3.797 -1.571 1 10.65 ? C8 NAG 301 A 1 HETATM 9 N N2 NAG . . . B 2 -6.367 -1.582 -0.028 1 9.85 ? N2 NAG 301 A 1 HETATM 10 O O1 NAG . . . B 2 -6.744 0.749 -1.515 1 8.27 ? O1 NAG 301 A 1 HETATM 11 O O3 NAG . . . B 2 -4.678 -1.421 2.158 1 7.79 ? O3 NAG 301 A 1 HETATM 12 O O4 NAG . . . B 2 -5.255 0.898 3.715 1 7.37 ? O4 NAG 301 A 1 HETATM 13 O O5 NAG . . . B 2 -6.255 1.982 0.327 1 7.88 ? O5 NAG 301 A 1 HETATM 14 O O6 NAG . . . B 2 -4.439 3.727 1.613 1 7.62 ? O6 NAG 301 A 1 HETATM 15 O O7 NAG . . . B 2 -5.221 -1.962 -1.894 1 10.63 ? O7 NAG 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #