data_1ZKQ # _model_server_result.job_id yUmD8d6rtnkNjbmkruv0hA _model_server_result.datetime_utc '2024-11-22 08:52:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zkq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":600}' # _entry.id 1ZKQ # _exptl.entry_id 1ZKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZKQ _cell.length_a 108.83 _cell.length_b 108.83 _cell.length_c 205.95 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_454 -x-1/2,y,-z-1/4 -1 0 0 0 1 0 0 0 -1 -54.415 0 -51.4875 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 79 A CYS 86 1_555 A SG CYS 84 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? disulf ? disulf2 A SG CYS 476 A CYS 483 1_555 A SG CYS 476 A CYS 483 5_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1ZKQ _atom_sites.fract_transf_matrix[1][1] 0.009189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 600 600 FAD FAD . C 3 HOH A 1 601 601 HOH WAT . C 3 HOH A 2 602 602 HOH WAT . C 3 HOH A 3 603 603 HOH WAT . C 3 HOH A 4 604 604 HOH WAT . C 3 HOH A 5 605 605 HOH WAT . C 3 HOH A 6 606 606 HOH WAT . C 3 HOH A 7 607 607 HOH WAT . C 3 HOH A 8 608 608 HOH WAT . C 3 HOH A 9 609 609 HOH WAT . C 3 HOH A 10 610 610 HOH WAT . C 3 HOH A 11 611 611 HOH WAT . C 3 HOH A 12 612 612 HOH WAT . C 3 HOH A 13 613 613 HOH WAT . C 3 HOH A 14 614 614 HOH WAT . C 3 HOH A 15 615 615 HOH WAT . C 3 HOH A 16 616 616 HOH WAT . C 3 HOH A 17 617 617 HOH WAT . C 3 HOH A 18 618 618 HOH WAT . C 3 HOH A 19 619 619 HOH WAT . C 3 HOH A 20 620 620 HOH WAT . C 3 HOH A 21 621 621 HOH WAT . C 3 HOH A 22 622 622 HOH WAT . C 3 HOH A 23 623 623 HOH WAT . C 3 HOH A 24 624 624 HOH WAT . C 3 HOH A 25 625 625 HOH WAT . C 3 HOH A 26 626 626 HOH WAT . C 3 HOH A 27 627 627 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -19.13 61.117 0.171 1 53.8 ? PA FAD 600 A 1 HETATM 2 O O1A FAD . . . B 2 -20.261 61.52 -0.717 1 53.45 ? O1A FAD 600 A 1 HETATM 3 O O2A FAD . . . B 2 -17.813 61.812 0.029 1 57.33 ? O2A FAD 600 A 1 HETATM 4 O O5B FAD . . . B 2 -19.698 61.252 1.642 1 55.94 ? O5B FAD 600 A 1 HETATM 5 C C5B FAD . . . B 2 -18.971 60.987 2.852 1 59.6 ? C5B FAD 600 A 1 HETATM 6 C C4B FAD . . . B 2 -19.647 61.819 3.95 1 61.98 ? C4B FAD 600 A 1 HETATM 7 O O4B FAD . . . B 2 -19.207 61.335 5.248 1 64.02 ? O4B FAD 600 A 1 HETATM 8 C C3B FAD . . . B 2 -19.348 63.341 3.95 1 61.52 ? C3B FAD 600 A 1 HETATM 9 O O3B FAD . . . B 2 -20.481 64.16 4.198 1 59.91 ? O3B FAD 600 A 1 HETATM 10 C C2B FAD . . . B 2 -18.254 63.454 5.007 1 62.61 ? C2B FAD 600 A 1 HETATM 11 O O2B FAD . . . B 2 -17.968 64.72 5.544 1 64.92 ? O2B FAD 600 A 1 HETATM 12 C C1B FAD . . . B 2 -18.71 62.441 6.028 1 64.37 ? C1B FAD 600 A 1 HETATM 13 N N9A FAD . . . B 2 -17.686 61.91 6.927 1 67.44 ? N9A FAD 600 A 1 HETATM 14 C C8A FAD . . . B 2 -16.375 61.614 6.664 1 68.76 ? C8A FAD 600 A 1 HETATM 15 N N7A FAD . . . B 2 -15.711 61.136 7.698 1 69.05 ? N7A FAD 600 A 1 HETATM 16 C C5A FAD . . . B 2 -16.657 61.12 8.717 1 69.12 ? C5A FAD 600 A 1 HETATM 17 C C6A FAD . . . B 2 -16.583 60.705 10.102 1 70.07 ? C6A FAD 600 A 1 HETATM 18 N N6A FAD . . . B 2 -15.445 60.224 10.641 1 69.91 ? N6A FAD 600 A 1 HETATM 19 N N1A FAD . . . B 2 -17.717 60.813 10.866 1 70.18 ? N1A FAD 600 A 1 HETATM 20 C C2A FAD . . . B 2 -18.859 61.303 10.293 1 69.7 ? C2A FAD 600 A 1 HETATM 21 N N3A FAD . . . B 2 -19.039 61.714 9.021 1 69.5 ? N3A FAD 600 A 1 HETATM 22 C C4A FAD . . . B 2 -17.851 61.585 8.27 1 68.56 ? C4A FAD 600 A 1 HETATM 23 N N1 FAD . . . B 2 -18.903 61.312 -9.373 1 48.38 ? N1 FAD 600 A 1 HETATM 24 C C2 FAD . . . B 2 -19.757 61.065 -10.428 1 47.74 ? C2 FAD 600 A 1 HETATM 25 O O2 FAD . . . B 2 -20.401 59.978 -10.551 1 48.51 ? O2 FAD 600 A 1 HETATM 26 N N3 FAD . . . B 2 -19.942 62.062 -11.413 1 47.38 ? N3 FAD 600 A 1 HETATM 27 C C4 FAD . . . B 2 -19.3 63.317 -11.423 1 45.99 ? C4 FAD 600 A 1 HETATM 28 O O4 FAD . . . B 2 -19.543 64.126 -12.353 1 45.91 ? O4 FAD 600 A 1 HETATM 29 C C4X FAD . . . B 2 -18.403 63.56 -10.331 1 45.01 ? C4X FAD 600 A 1 HETATM 30 N N5 FAD . . . B 2 -17.71 64.801 -10.256 1 44.18 ? N5 FAD 600 A 1 HETATM 31 C C5X FAD . . . B 2 -16.851 65.019 -9.161 1 43.32 ? C5X FAD 600 A 1 HETATM 32 C C6 FAD . . . B 2 -16.139 66.26 -9.058 1 42.33 ? C6 FAD 600 A 1 HETATM 33 C C7 FAD . . . B 2 -15.28 66.527 -7.995 1 42.79 ? C7 FAD 600 A 1 HETATM 34 C C7M FAD . . . B 2 -14.566 67.878 -7.974 1 41.7 ? C7M FAD 600 A 1 HETATM 35 C C8 FAD . . . B 2 -15.082 65.562 -6.97 1 41.97 ? C8 FAD 600 A 1 HETATM 36 C C8M FAD . . . B 2 -14.164 65.79 -5.794 1 42.97 ? C8M FAD 600 A 1 HETATM 37 C C9 FAD . . . B 2 -15.783 64.308 -7.051 1 40.73 ? C9 FAD 600 A 1 HETATM 38 C C9A FAD . . . B 2 -16.659 64.016 -8.121 1 43.9 ? C9A FAD 600 A 1 HETATM 39 N N10 FAD . . . B 2 -17.374 62.759 -8.222 1 45.14 ? N10 FAD 600 A 1 HETATM 40 C C10 FAD . . . B 2 -18.235 62.533 -9.318 1 46.33 ? C10 FAD 600 A 1 HETATM 41 C C1' FAD . . . B 2 -17.184 61.725 -7.167 1 45.79 ? C1' FAD 600 A 1 HETATM 42 C C2' FAD . . . B 2 -18.368 61.49 -6.226 1 47.87 ? C2' FAD 600 A 1 HETATM 43 O O2' FAD . . . B 2 -18.778 62.727 -5.631 1 47.68 ? O2' FAD 600 A 1 HETATM 44 C C3' FAD . . . B 2 -17.948 60.445 -5.194 1 47.93 ? C3' FAD 600 A 1 HETATM 45 O O3' FAD . . . B 2 -17.566 59.263 -5.904 1 50.72 ? O3' FAD 600 A 1 HETATM 46 C C4' FAD . . . B 2 -19.098 60.12 -4.19 1 46.8 ? C4' FAD 600 A 1 HETATM 47 O O4' FAD . . . B 2 -19.455 61.333 -3.507 1 46.25 ? O4' FAD 600 A 1 HETATM 48 C C5' FAD . . . B 2 -18.65 59.085 -3.176 1 46.53 ? C5' FAD 600 A 1 HETATM 49 O O5' FAD . . . B 2 -19.731 58.778 -2.3 1 48.41 ? O5' FAD 600 A 1 HETATM 50 P P FAD . . . B 2 -19.513 58.306 -0.793 1 49.71 ? P FAD 600 A 1 HETATM 51 O O1P FAD . . . B 2 -20.842 58.047 -0.252 1 49.19 ? O1P FAD 600 A 1 HETATM 52 O O2P FAD . . . B 2 -18.534 57.178 -0.769 1 50.77 ? O2P FAD 600 A 1 HETATM 53 O O3P FAD . . . B 2 -18.861 59.538 0.028 1 53.38 ? O3P FAD 600 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #