data_1ZKY
#
_model_server_result.job_id            ShhjYUZkl-uFVc16ojiomA 
_model_server_result.datetime_utc      '2024-10-11 19:17:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":801}' 
#
_entry.id    1ZKY 
#
_exptl.entry_id    1ZKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              288.381 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-[(1S,2S,5S)-5-(HYDROXYMETHYL)-6,8,9-TRIMETHYL-3-OXABICYCLO[3.3.1]NON-7-EN-2-YL]PHENOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.06 
_cell.angle_gamma         90 
_cell.entry_id            1ZKY 
_cell.length_a            55.929 
_cell.length_b            84.129 
_cell.length_c            58.22 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 83 A GLU 380 1_555 A N CME 84 A CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? 
covale ? covale2 A C CME 84 A CME 381 1_555 A N ALA 85 A ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? 
covale ? covale3 A C LYS 119 A LYS 416 1_555 A N CME 120 A CME 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale4 A C CME 120 A CME 417 1_555 A N VAL 121 A VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale5 A C LYS 232 A LYS 529 1_555 A N CME 233 A CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 A C CME 233 A CME 530 1_555 A N LYS 234 A LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 B C GLU 83 B GLU 380 1_555 B N CME 84 B CME 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale8 B C CME 84 B CME 381 1_555 B N ALA 85 B ALA 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? 
covale ? covale9 B C LYS 119 B LYS 416 1_555 B N CME 120 B CME 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale10 B C CME 120 B CME 417 1_555 B N VAL 121 B VAL 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale11 B C LYS 232 B LYS 529 1_555 B N CME 233 B CME 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale12 B C CME 233 B CME 530 1_555 B N LYS 234 B LYS 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
#
_chem_comp.formula           'C18 H24 O3' 
_chem_comp.formula_weight    288.381 
_chem_comp.id                689 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-[(1S,2S,5S)-5-(HYDROXYMETHYL)-6,8,9-TRIMETHYL-3-OXABICYCLO[3.3.1]NON-7-EN-2-YL]PHENOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAN CAK 689 sing 1 n n 
CAN HAN1 689 sing 2 n n 
CAN HAN2 689 sing 3 n n 
CAN HAN3 689 sing 4 n n 
CAK CAJ 689 sing 5 n n 
CAK CAL 689 sing 6 n n 
CAK HAK 689 sing 7 n n 
CAJ CAO 689 sing 8 n n 
CAJ CAI 689 sing 9 n n 
CAJ HAJ 689 sing 10 n n 
CAO CAR 689 sing 11 n n 
CAO CAQ 689 doub 12 n n 
CAR HAR1 689 sing 13 n n 
CAR HAR2 689 sing 14 n n 
CAR HAR3 689 sing 15 n n 
CAQ CAP 689 sing 16 n n 
CAQ HAQ 689 sing 17 n n 
CAP CAS 689 sing 18 n n 
CAP CAL 689 sing 19 n n 
CAP HAP 689 sing 20 n n 
CAS HAS1 689 sing 21 n n 
CAS HAS2 689 sing 22 n n 
CAS HAS3 689 sing 23 n n 
CAL CAT 689 sing 24 n n 
CAL CAM 689 sing 25 n n 
CAT OAU 689 sing 26 n n 
CAT HAT1 689 sing 27 n n 
CAT HAT2 689 sing 28 n n 
OAU HAU 689 sing 29 n n 
CAM OAH 689 sing 30 n n 
CAM HAM1 689 sing 31 n n 
CAM HAM2 689 sing 32 n n 
OAH CAI 689 sing 33 n n 
CAI CAD 689 sing 34 n n 
CAI HAI 689 sing 35 n n 
CAD CAC 689 sing 36 n y 
CAD CAE 689 doub 37 n y 
CAC CAB 689 doub 38 n y 
CAC HAC 689 sing 39 n n 
CAB CAA 689 sing 40 n y 
CAB HAB 689 sing 41 n n 
CAA OAG 689 sing 42 n n 
CAA CAF 689 doub 43 n y 
OAG HAG 689 sing 44 n n 
CAF CAE 689 sing 45 n y 
CAF HAF 689 sing 46 n n 
CAE HAE 689 sing 47 n n 
#
_atom_sites.entry_id                     1ZKY 
_atom_sites.fract_transf_matrix[1][1]    0.01788 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006177 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011887 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018172 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 689 A 1 700 700 689 689 . 
F 3 689 B 1 801 801 689 689 . 
G 4 HOH A 1 14 14 HOH HOH . 
G 4 HOH A 2 15 15 HOH HOH . 
G 4 HOH A 3 16 16 HOH HOH . 
G 4 HOH A 4 17 17 HOH HOH . 
G 4 HOH A 5 18 18 HOH HOH . 
G 4 HOH A 6 19 19 HOH HOH . 
G 4 HOH A 7 20 20 HOH HOH . 
G 4 HOH A 8 21 21 HOH HOH . 
G 4 HOH A 9 22 22 HOH HOH . 
G 4 HOH A 10 23 23 HOH HOH . 
G 4 HOH A 11 24 24 HOH HOH . 
G 4 HOH A 12 25 25 HOH HOH . 
G 4 HOH A 13 26 26 HOH HOH . 
G 4 HOH A 14 27 27 HOH HOH . 
G 4 HOH A 15 28 28 HOH HOH . 
G 4 HOH A 16 31 31 HOH HOH . 
G 4 HOH A 17 33 33 HOH HOH . 
G 4 HOH A 18 37 37 HOH HOH . 
G 4 HOH A 19 38 38 HOH HOH . 
G 4 HOH A 20 39 39 HOH HOH . 
G 4 HOH A 21 40 40 HOH HOH . 
G 4 HOH A 22 41 41 HOH HOH . 
G 4 HOH A 23 42 42 HOH HOH . 
G 4 HOH A 24 43 43 HOH HOH . 
G 4 HOH A 25 44 44 HOH HOH . 
G 4 HOH A 26 45 45 HOH HOH . 
G 4 HOH A 27 46 46 HOH HOH . 
G 4 HOH A 28 47 47 HOH HOH . 
G 4 HOH A 29 48 48 HOH HOH . 
G 4 HOH A 30 49 49 HOH HOH . 
G 4 HOH A 31 50 50 HOH HOH . 
G 4 HOH A 32 51 51 HOH HOH . 
G 4 HOH A 33 52 52 HOH HOH . 
G 4 HOH A 34 53 53 HOH HOH . 
G 4 HOH A 35 54 54 HOH HOH . 
G 4 HOH A 36 55 55 HOH HOH . 
G 4 HOH A 37 65 65 HOH HOH . 
G 4 HOH A 38 71 71 HOH HOH . 
G 4 HOH A 39 72 72 HOH HOH . 
G 4 HOH A 40 73 73 HOH HOH . 
G 4 HOH A 41 74 74 HOH HOH . 
G 4 HOH A 42 75 75 HOH HOH . 
G 4 HOH A 43 76 76 HOH HOH . 
G 4 HOH A 44 77 77 HOH HOH . 
G 4 HOH A 45 78 78 HOH HOH . 
G 4 HOH A 46 79 79 HOH HOH . 
G 4 HOH A 47 80 80 HOH HOH . 
G 4 HOH A 48 81 81 HOH HOH . 
G 4 HOH A 49 82 82 HOH HOH . 
G 4 HOH A 50 83 83 HOH HOH . 
G 4 HOH A 51 84 84 HOH HOH . 
G 4 HOH A 52 106 106 HOH HOH . 
G 4 HOH A 53 107 107 HOH HOH . 
G 4 HOH A 54 109 109 HOH HOH . 
G 4 HOH A 55 110 110 HOH HOH . 
G 4 HOH A 56 112 112 HOH HOH . 
G 4 HOH A 57 113 113 HOH HOH . 
G 4 HOH A 58 114 114 HOH HOH . 
G 4 HOH A 59 115 115 HOH HOH . 
G 4 HOH A 60 129 129 HOH HOH . 
G 4 HOH A 61 130 130 HOH HOH . 
G 4 HOH A 62 134 134 HOH HOH . 
G 4 HOH A 63 135 135 HOH HOH . 
G 4 HOH A 64 139 139 HOH HOH . 
G 4 HOH A 65 140 140 HOH HOH . 
H 4 HOH B 1 1 1 HOH HOH . 
H 4 HOH B 2 2 2 HOH HOH . 
H 4 HOH B 3 3 3 HOH HOH . 
H 4 HOH B 4 4 4 HOH HOH . 
H 4 HOH B 5 5 5 HOH HOH . 
H 4 HOH B 6 6 6 HOH HOH . 
H 4 HOH B 7 7 7 HOH HOH . 
H 4 HOH B 8 8 8 HOH HOH . 
H 4 HOH B 9 9 9 HOH HOH . 
H 4 HOH B 10 10 10 HOH HOH . 
H 4 HOH B 11 11 11 HOH HOH . 
H 4 HOH B 12 12 12 HOH HOH . 
H 4 HOH B 13 13 13 HOH HOH . 
H 4 HOH B 14 29 29 HOH HOH . 
H 4 HOH B 15 30 30 HOH HOH . 
H 4 HOH B 16 32 32 HOH HOH . 
H 4 HOH B 17 34 34 HOH HOH . 
H 4 HOH B 18 35 35 HOH HOH . 
H 4 HOH B 19 36 36 HOH HOH . 
H 4 HOH B 20 57 57 HOH HOH . 
H 4 HOH B 21 58 58 HOH HOH . 
H 4 HOH B 22 59 59 HOH HOH . 
H 4 HOH B 23 60 60 HOH HOH . 
H 4 HOH B 24 61 61 HOH HOH . 
H 4 HOH B 25 62 62 HOH HOH . 
H 4 HOH B 26 63 63 HOH HOH . 
H 4 HOH B 27 64 64 HOH HOH . 
H 4 HOH B 28 66 66 HOH HOH . 
H 4 HOH B 29 67 67 HOH HOH . 
H 4 HOH B 30 68 68 HOH HOH . 
H 4 HOH B 31 69 69 HOH HOH . 
H 4 HOH B 32 70 70 HOH HOH . 
H 4 HOH B 33 85 85 HOH HOH . 
H 4 HOH B 34 86 86 HOH HOH . 
H 4 HOH B 35 87 87 HOH HOH . 
H 4 HOH B 36 88 88 HOH HOH . 
H 4 HOH B 37 89 89 HOH HOH . 
H 4 HOH B 38 90 90 HOH HOH . 
H 4 HOH B 39 91 91 HOH HOH . 
H 4 HOH B 40 92 92 HOH HOH . 
H 4 HOH B 41 93 93 HOH HOH . 
H 4 HOH B 42 94 94 HOH HOH . 
H 4 HOH B 43 95 95 HOH HOH . 
H 4 HOH B 44 96 96 HOH HOH . 
H 4 HOH B 45 97 97 HOH HOH . 
H 4 HOH B 46 98 98 HOH HOH . 
H 4 HOH B 47 99 99 HOH HOH . 
H 4 HOH B 48 100 100 HOH HOH . 
H 4 HOH B 49 101 101 HOH HOH . 
H 4 HOH B 50 102 102 HOH HOH . 
H 4 HOH B 51 103 103 HOH HOH . 
H 4 HOH B 52 104 104 HOH HOH . 
H 4 HOH B 53 105 105 HOH HOH . 
H 4 HOH B 54 108 108 HOH HOH . 
H 4 HOH B 55 111 111 HOH HOH . 
H 4 HOH B 56 116 116 HOH HOH . 
H 4 HOH B 57 117 117 HOH HOH . 
H 4 HOH B 58 118 118 HOH HOH . 
H 4 HOH B 59 119 119 HOH HOH . 
H 4 HOH B 60 120 120 HOH HOH . 
H 4 HOH B 61 121 121 HOH HOH . 
H 4 HOH B 62 122 122 HOH HOH . 
H 4 HOH B 63 123 123 HOH HOH . 
H 4 HOH B 64 124 124 HOH HOH . 
H 4 HOH B 65 125 125 HOH HOH . 
H 4 HOH B 66 126 126 HOH HOH . 
H 4 HOH B 67 127 127 HOH HOH . 
H 4 HOH B 68 128 128 HOH HOH . 
H 4 HOH B 69 131 131 HOH HOH . 
H 4 HOH B 70 132 132 HOH HOH . 
H 4 HOH B 71 133 133 HOH HOH . 
H 4 HOH B 72 136 136 HOH HOH . 
H 4 HOH B 73 137 137 HOH HOH . 
H 4 HOH B 74 138 138 HOH HOH . 
H 4 HOH B 75 141 141 HOH HOH . 
H 4 HOH B 76 142 142 HOH HOH . 
H 4 HOH B 77 143 143 HOH HOH . 
H 4 HOH B 78 144 144 HOH HOH . 
I 4 HOH C 1 56 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAN 689 . . . F 3 -32.848 -7.361 19.881 1 24.63 ? CAN 689 801 B 1 
HETATM 2 C CAK 689 . . . F 3 -32.955 -5.932 19.408 1 21.26 ? CAK 689 801 B 1 
HETATM 3 C CAJ 689 . . . F 3 -32.555 -4.984 20.514 1 25.37 ? CAJ 689 801 B 1 
HETATM 4 C CAO 689 . . . F 3 -33.291 -3.595 20.389 1 22.79 ? CAO 689 801 B 1 
HETATM 5 C CAR 689 . . . F 3 -33.202 -2.518 21.458 1 15.34 ? CAR 689 801 B 1 
HETATM 6 C CAQ 689 . . . F 3 -34.089 -3.289 19.314 1 21.38 ? CAQ 689 801 B 1 
HETATM 7 C CAP 689 . . . F 3 -34.241 -4.317 18.239 1 21.55 ? CAP 689 801 B 1 
HETATM 8 C CAS 689 . . . F 3 -32.937 -4.29 17.465 1 23.5 ? CAS 689 801 B 1 
HETATM 9 C CAL 689 . . . F 3 -34.366 -5.577 19.037 1 18.74 ? CAL 689 801 B 1 
HETATM 10 C CAT 689 . . . F 3 -35.142 -6.673 18.288 1 25.04 ? CAT 689 801 B 1 
HETATM 11 O OAU 689 . . . F 3 -34.459 -7.144 17.142 1 25.1 ? OAU 689 801 B 1 
HETATM 12 C CAM 689 . . . F 3 -35.105 -5.204 20.347 1 23.92 ? CAM 689 801 B 1 
HETATM 13 O OAH 689 . . . F 3 -34.41 -5.154 21.651 1 28.3 ? OAH 689 801 B 1 
HETATM 14 C CAI 689 . . . F 3 -33.051 -5.656 21.74 1 19.9 ? CAI 689 801 B 1 
HETATM 15 C CAD 689 . . . F 3 -32.137 -5.105 22.831 1 23.09 ? CAD 689 801 B 1 
HETATM 16 C CAC 689 . . . F 3 -30.776 -5.02 22.59 1 19.42 ? CAC 689 801 B 1 
HETATM 17 C CAB 689 . . . F 3 -29.91 -4.526 23.534 1 18.44 ? CAB 689 801 B 1 
HETATM 18 C CAA 689 . . . F 3 -30.435 -4.107 24.741 1 22.24 ? CAA 689 801 B 1 
HETATM 19 O OAG 689 . . . F 3 -29.629 -3.613 25.67 1 19.26 ? OAG 689 801 B 1 
HETATM 20 C CAF 689 . . . F 3 -31.791 -4.178 24.993 1 20.38 ? CAF 689 801 B 1 
HETATM 21 C CAE 689 . . . F 3 -32.649 -4.679 24.037 1 19.51 ? CAE 689 801 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           21 
#