data_1ZLE
#
_model_server_result.job_id            jykVgdDBSxqUjsFdWzE3zg 
_model_server_result.datetime_utc      '2024-10-28 08:21:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zle 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    1ZLE 
#
_exptl.entry_id    1ZLE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZLE 
_cell.length_a            74.5 
_cell.length_b            74.5 
_cell.length_c            137.33 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZLE 
_symmetry.cell_setting             tetragonal 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,L 1 1 
B,G,H,I,J,M 2 1 
C,K,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PCA 1 A PCA 61 1_555 A N GLY 2 A GLY 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 D NI NI . A NI 1003 1_555 A OD2 ASP 25 A ASP 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc2 D NI NI . A NI 1003 1_555 A OD2 ASP 23 A ASP 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc3 F NI NI . A NI 1008 1_555 A O ASN 118 A ASN 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
covale ? covale2 B C PCA 1 B PCA 61 1_555 B N GLY 2 B GLY 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc4 G NI NI . B NI 1001 1_555 M O HOH . B HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc5 G NI NI . B NI 1001 1_555 B OD2 ASP 23 B ASP 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc6 I NI NI . B NI 1006 1_555 L O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc7 I NI NI . B NI 1006 1_555 L O HOH . A HOH 1050 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc8 I NI NI . B NI 1006 1_555 N O HOH . C HOH 1034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc9 J NI NI . B NI 1007 1_555 B OD1 ASP 75 B ASP 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
covale ? covale3 C C PCA 1 C PCA 61 1_555 C N GLY 2 C GLY 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc10 K NI NI . C NI 1002 1_555 C OD2 ASP 23 C ASP 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc11 G NI NI . B NI 1001 1_555 M O HOH . B HOH 1019 6_553 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc12 G NI NI . B NI 1001 1_555 B OD2 ASP 23 B ASP 83 6_553 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc13 K NI NI . C NI 1002 1_555 C OD2 ASP 23 C ASP 83 5_754 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ZLE 
_atom_sites.fract_transf_matrix[1][1]    0.013423 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013423 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007282 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NI A 1 1003 1003 NI NI . 
E 2 NI A 1 1005 1005 NI NI . 
F 2 NI A 1 1008 1008 NI NI . 
G 2 NI B 1 1001 1001 NI NI . 
H 2 NI B 1 1004 1004 NI NI . 
I 2 NI B 1 1006 1006 NI NI . 
J 2 NI B 1 1007 1007 NI NI . 
K 2 NI C 1 1002 1002 NI NI . 
L 3 HOH A 1 1009 3 HOH HOH . 
L 3 HOH A 2 1010 6 HOH HOH . 
L 3 HOH A 3 1011 7 HOH HOH . 
L 3 HOH A 4 1012 11 HOH HOH . 
L 3 HOH A 5 1013 12 HOH HOH . 
L 3 HOH A 6 1014 17 HOH HOH . 
L 3 HOH A 7 1015 22 HOH HOH . 
L 3 HOH A 8 1016 24 HOH HOH . 
L 3 HOH A 9 1017 25 HOH HOH . 
L 3 HOH A 10 1018 26 HOH HOH . 
L 3 HOH A 11 1019 28 HOH HOH . 
L 3 HOH A 12 1020 30 HOH HOH . 
L 3 HOH A 13 1021 31 HOH HOH . 
L 3 HOH A 14 1022 32 HOH HOH . 
L 3 HOH A 15 1023 33 HOH HOH . 
L 3 HOH A 16 1024 34 HOH HOH . 
L 3 HOH A 17 1025 37 HOH HOH . 
L 3 HOH A 18 1026 39 HOH HOH . 
L 3 HOH A 19 1027 41 HOH HOH . 
L 3 HOH A 20 1028 43 HOH HOH . 
L 3 HOH A 21 1029 48 HOH HOH . 
L 3 HOH A 22 1030 50 HOH HOH . 
L 3 HOH A 23 1031 59 HOH HOH . 
L 3 HOH A 24 1032 63 HOH HOH . 
L 3 HOH A 25 1033 64 HOH HOH . 
L 3 HOH A 26 1034 66 HOH HOH . 
L 3 HOH A 27 1035 68 HOH HOH . 
L 3 HOH A 28 1036 69 HOH HOH . 
L 3 HOH A 29 1037 71 HOH HOH . 
L 3 HOH A 30 1038 72 HOH HOH . 
L 3 HOH A 31 1039 74 HOH HOH . 
L 3 HOH A 32 1040 76 HOH HOH . 
L 3 HOH A 33 1041 78 HOH HOH . 
L 3 HOH A 34 1042 79 HOH HOH . 
L 3 HOH A 35 1043 84 HOH HOH . 
L 3 HOH A 36 1044 90 HOH HOH . 
L 3 HOH A 37 1045 92 HOH HOH . 
L 3 HOH A 38 1046 93 HOH HOH . 
L 3 HOH A 39 1047 101 HOH HOH . 
L 3 HOH A 40 1048 102 HOH HOH . 
L 3 HOH A 41 1049 106 HOH HOH . 
L 3 HOH A 42 1050 107 HOH HOH . 
L 3 HOH A 43 1051 110 HOH HOH . 
L 3 HOH A 44 1052 117 HOH HOH . 
L 3 HOH A 45 1053 120 HOH HOH . 
L 3 HOH A 46 1054 122 HOH HOH . 
L 3 HOH A 47 1055 123 HOH HOH . 
L 3 HOH A 48 1056 128 HOH HOH . 
L 3 HOH A 49 1057 129 HOH HOH . 
L 3 HOH A 50 1058 131 HOH HOH . 
L 3 HOH A 51 1059 133 HOH HOH . 
L 3 HOH A 52 1060 134 HOH HOH . 
L 3 HOH A 53 1061 136 HOH HOH . 
L 3 HOH A 54 1062 138 HOH HOH . 
L 3 HOH A 55 1063 143 HOH HOH . 
L 3 HOH A 56 1064 145 HOH HOH . 
L 3 HOH A 57 1065 146 HOH HOH . 
L 3 HOH A 58 1066 151 HOH HOH . 
L 3 HOH A 59 1067 156 HOH HOH . 
L 3 HOH A 60 1068 157 HOH HOH . 
L 3 HOH A 61 1069 160 HOH HOH . 
L 3 HOH A 62 1070 162 HOH HOH . 
L 3 HOH A 63 1071 163 HOH HOH . 
M 3 HOH B 1 1008 1 HOH HOH . 
M 3 HOH B 2 1009 2 HOH HOH . 
M 3 HOH B 3 1010 4 HOH HOH . 
M 3 HOH B 4 1011 8 HOH HOH . 
M 3 HOH B 5 1012 10 HOH HOH . 
M 3 HOH B 6 1013 13 HOH HOH . 
M 3 HOH B 7 1014 14 HOH HOH . 
M 3 HOH B 8 1015 15 HOH HOH . 
M 3 HOH B 9 1016 16 HOH HOH . 
M 3 HOH B 10 1017 18 HOH HOH . 
M 3 HOH B 11 1018 19 HOH HOH . 
M 3 HOH B 12 1019 20 HOH HOH . 
M 3 HOH B 13 1020 27 HOH HOH . 
M 3 HOH B 14 1021 29 HOH HOH . 
M 3 HOH B 15 1022 38 HOH HOH . 
M 3 HOH B 16 1023 40 HOH HOH . 
M 3 HOH B 17 1024 42 HOH HOH . 
M 3 HOH B 18 1025 44 HOH HOH . 
M 3 HOH B 19 1026 54 HOH HOH . 
M 3 HOH B 20 1027 55 HOH HOH . 
M 3 HOH B 21 1028 58 HOH HOH . 
M 3 HOH B 22 1029 60 HOH HOH . 
M 3 HOH B 23 1030 61 HOH HOH . 
M 3 HOH B 24 1031 80 HOH HOH . 
M 3 HOH B 25 1032 81 HOH HOH . 
M 3 HOH B 26 1033 82 HOH HOH . 
M 3 HOH B 27 1034 86 HOH HOH . 
M 3 HOH B 28 1035 87 HOH HOH . 
M 3 HOH B 29 1036 88 HOH HOH . 
M 3 HOH B 30 1037 91 HOH HOH . 
M 3 HOH B 31 1038 95 HOH HOH . 
M 3 HOH B 32 1039 96 HOH HOH . 
M 3 HOH B 33 1040 99 HOH HOH . 
M 3 HOH B 34 1041 100 HOH HOH . 
M 3 HOH B 35 1042 104 HOH HOH . 
M 3 HOH B 36 1043 105 HOH HOH . 
M 3 HOH B 37 1044 118 HOH HOH . 
M 3 HOH B 38 1045 124 HOH HOH . 
M 3 HOH B 39 1046 125 HOH HOH . 
M 3 HOH B 40 1047 130 HOH HOH . 
M 3 HOH B 41 1048 135 HOH HOH . 
M 3 HOH B 42 1049 137 HOH HOH . 
M 3 HOH B 43 1050 139 HOH HOH . 
M 3 HOH B 44 1051 141 HOH HOH . 
M 3 HOH B 45 1052 144 HOH HOH . 
M 3 HOH B 46 1053 147 HOH HOH . 
M 3 HOH B 47 1054 149 HOH HOH . 
M 3 HOH B 48 1055 152 HOH HOH . 
M 3 HOH B 49 1056 153 HOH HOH . 
M 3 HOH B 50 1057 154 HOH HOH . 
M 3 HOH B 51 1058 158 HOH HOH . 
M 3 HOH B 52 1059 159 HOH HOH . 
M 3 HOH B 53 1060 164 HOH HOH . 
M 3 HOH B 54 1061 165 HOH HOH . 
N 3 HOH C 1 1003 5 HOH HOH . 
N 3 HOH C 2 1004 9 HOH HOH . 
N 3 HOH C 3 1005 21 HOH HOH . 
N 3 HOH C 4 1006 23 HOH HOH . 
N 3 HOH C 5 1007 35 HOH HOH . 
N 3 HOH C 6 1008 36 HOH HOH . 
N 3 HOH C 7 1009 45 HOH HOH . 
N 3 HOH C 8 1010 46 HOH HOH . 
N 3 HOH C 9 1011 47 HOH HOH . 
N 3 HOH C 10 1012 49 HOH HOH . 
N 3 HOH C 11 1013 51 HOH HOH . 
N 3 HOH C 12 1014 52 HOH HOH . 
N 3 HOH C 13 1015 53 HOH HOH . 
N 3 HOH C 14 1016 56 HOH HOH . 
N 3 HOH C 15 1017 57 HOH HOH . 
N 3 HOH C 16 1018 62 HOH HOH . 
N 3 HOH C 17 1019 65 HOH HOH . 
N 3 HOH C 18 1020 67 HOH HOH . 
N 3 HOH C 19 1021 70 HOH HOH . 
N 3 HOH C 20 1022 73 HOH HOH . 
N 3 HOH C 21 1023 75 HOH HOH . 
N 3 HOH C 22 1024 77 HOH HOH . 
N 3 HOH C 23 1025 83 HOH HOH . 
N 3 HOH C 24 1026 85 HOH HOH . 
N 3 HOH C 25 1027 89 HOH HOH . 
N 3 HOH C 26 1028 94 HOH HOH . 
N 3 HOH C 27 1029 97 HOH HOH . 
N 3 HOH C 28 1030 98 HOH HOH . 
N 3 HOH C 29 1031 103 HOH HOH . 
N 3 HOH C 30 1032 108 HOH HOH . 
N 3 HOH C 31 1033 109 HOH HOH . 
N 3 HOH C 32 1034 111 HOH HOH . 
N 3 HOH C 33 1035 112 HOH HOH . 
N 3 HOH C 34 1036 113 HOH HOH . 
N 3 HOH C 35 1037 114 HOH HOH . 
N 3 HOH C 36 1038 115 HOH HOH . 
N 3 HOH C 37 1039 116 HOH HOH . 
N 3 HOH C 38 1040 119 HOH HOH . 
N 3 HOH C 39 1041 121 HOH HOH . 
N 3 HOH C 40 1042 126 HOH HOH . 
N 3 HOH C 41 1043 127 HOH HOH . 
N 3 HOH C 42 1044 132 HOH HOH . 
N 3 HOH C 43 1045 140 HOH HOH . 
N 3 HOH C 44 1046 142 HOH HOH . 
N 3 HOH C 45 1047 148 HOH HOH . 
N 3 HOH C 46 1048 150 HOH HOH . 
N 3 HOH C 47 1049 155 HOH HOH . 
N 3 HOH C 48 1050 161 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               40.468 
_atom_site.Cartn_y               35.31 
_atom_site.Cartn_z               -78.699 
_atom_site.occupancy             0.3 
_atom_site.B_iso_or_equiv        59.45 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           1003 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#