data_1ZLP
#
_model_server_result.job_id            mS47IK01qzBVgCZaYe1NXA 
_model_server_result.datetime_utc      '2024-11-27 21:30:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zlp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    1ZLP 
#
_exptl.entry_id    1ZLP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              102.132 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-HYDROXYPENTANAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZLP 
_cell.length_a            156.19 
_cell.length_b            156.19 
_cell.length_c            75.05 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZLP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 25.016667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 144 A CYS 144 1_555 D C1 GAQ . A GAQ 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.682 ? 
covale ? covale2 B SG CYS 144 B CYS 144 1_555 F C1 GAQ . B GAQ 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? 
metalc ? metalc1 A OD2 ASP 107 A ASP 107 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc2 A OD1 ASP 109 A ASP 109 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? 
metalc ? metalc3 A NZ LYS 142 A LYS 142 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.074 ? 
metalc ? metalc4 B OD2 ASP 107 B ASP 107 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C5 H10 O2' 
_chem_comp.formula_weight    102.132 
_chem_comp.id                GAQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-HYDROXYPENTANAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5 C5 GAQ doub 83 n n 
C5 C4 GAQ sing 84 n n 
C5 H55 GAQ sing 85 n n 
C4 C3 GAQ sing 86 n n 
C4 H41 GAQ sing 87 n n 
C4 H42 GAQ sing 88 n n 
C3 C2 GAQ sing 89 n n 
C3 H31 GAQ sing 90 n n 
C3 H32 GAQ sing 91 n n 
C2 C1 GAQ sing 92 n n 
C2 H21 GAQ sing 93 n n 
C2 H22 GAQ sing 94 n n 
C1 O1 GAQ sing 95 n n 
C1 H1 GAQ sing 96 n n 
C1 H11 GAQ sing 97 n n 
HO1 O1 GAQ sing 98 n n 
#
_atom_sites.entry_id                     1ZLP 
_atom_sites.fract_transf_matrix[1][1]    0.006402 
_atom_sites.fract_transf_matrix[1][2]    0.003696 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007393 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013324 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 401 MG MG . 
D 3 GAQ A 1 402 402 GAQ GAQ . 
E 2 MG B 1 401 401 MG MG . 
F 3 GAQ B 1 402 402 GAQ GAQ . 
G 4 HOH A 1 403 1 HOH HOH . 
G 4 HOH A 2 404 3 HOH HOH . 
G 4 HOH A 3 405 5 HOH HOH . 
G 4 HOH A 4 406 6 HOH HOH . 
G 4 HOH A 5 407 7 HOH HOH . 
G 4 HOH A 6 408 9 HOH HOH . 
G 4 HOH A 7 409 10 HOH HOH . 
G 4 HOH A 8 410 11 HOH HOH . 
G 4 HOH A 9 411 12 HOH HOH . 
G 4 HOH A 10 412 13 HOH HOH . 
G 4 HOH A 11 413 14 HOH HOH . 
G 4 HOH A 12 414 15 HOH HOH . 
G 4 HOH A 13 415 17 HOH HOH . 
G 4 HOH A 14 416 27 HOH HOH . 
G 4 HOH A 15 417 28 HOH HOH . 
G 4 HOH A 16 418 29 HOH HOH . 
G 4 HOH A 17 419 31 HOH HOH . 
G 4 HOH A 18 420 34 HOH HOH . 
G 4 HOH A 19 421 36 HOH HOH . 
G 4 HOH A 20 422 38 HOH HOH . 
G 4 HOH A 21 423 39 HOH HOH . 
G 4 HOH A 22 424 40 HOH HOH . 
G 4 HOH A 23 425 42 HOH HOH . 
G 4 HOH A 24 426 43 HOH HOH . 
G 4 HOH A 25 427 44 HOH HOH . 
G 4 HOH A 26 428 46 HOH HOH . 
G 4 HOH A 27 429 47 HOH HOH . 
G 4 HOH A 28 430 48 HOH HOH . 
G 4 HOH A 29 431 49 HOH HOH . 
G 4 HOH A 30 432 50 HOH HOH . 
G 4 HOH A 31 433 51 HOH HOH . 
G 4 HOH A 32 434 52 HOH HOH . 
G 4 HOH A 33 435 53 HOH HOH . 
G 4 HOH A 34 436 54 HOH HOH . 
G 4 HOH A 35 437 62 HOH HOH . 
G 4 HOH A 36 438 63 HOH HOH . 
G 4 HOH A 37 439 67 HOH HOH . 
G 4 HOH A 38 440 69 HOH HOH . 
H 4 HOH B 1 403 2 HOH HOH . 
H 4 HOH B 2 404 4 HOH HOH . 
H 4 HOH B 3 405 8 HOH HOH . 
H 4 HOH B 4 406 16 HOH HOH . 
H 4 HOH B 5 407 18 HOH HOH . 
H 4 HOH B 6 408 19 HOH HOH . 
H 4 HOH B 7 409 20 HOH HOH . 
H 4 HOH B 8 410 21 HOH HOH . 
H 4 HOH B 9 411 22 HOH HOH . 
H 4 HOH B 10 412 23 HOH HOH . 
H 4 HOH B 11 413 24 HOH HOH . 
H 4 HOH B 12 414 25 HOH HOH . 
H 4 HOH B 13 415 26 HOH HOH . 
H 4 HOH B 14 416 30 HOH HOH . 
H 4 HOH B 15 417 32 HOH HOH . 
H 4 HOH B 16 418 33 HOH HOH . 
H 4 HOH B 17 419 35 HOH HOH . 
H 4 HOH B 18 420 37 HOH HOH . 
H 4 HOH B 19 421 41 HOH HOH . 
H 4 HOH B 20 422 45 HOH HOH . 
H 4 HOH B 21 423 55 HOH HOH . 
H 4 HOH B 22 424 56 HOH HOH . 
H 4 HOH B 23 425 57 HOH HOH . 
H 4 HOH B 24 426 58 HOH HOH . 
H 4 HOH B 25 427 59 HOH HOH . 
H 4 HOH B 26 428 60 HOH HOH . 
H 4 HOH B 27 429 61 HOH HOH . 
H 4 HOH B 28 430 64 HOH HOH . 
H 4 HOH B 29 431 65 HOH HOH . 
H 4 HOH B 30 432 66 HOH HOH . 
H 4 HOH B 31 433 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5 GAQ . . . F 3 -39.709 99.313 2.67 1 76.59 ? O5 GAQ 402 B 1 
HETATM 2 C C5 GAQ . . . F 3 -40.761 100.093 3.268 1 74.03 ? C5 GAQ 402 B 1 
HETATM 3 C C4 GAQ . . . F 3 -40.144 101.391 3.756 1 69.59 ? C4 GAQ 402 B 1 
HETATM 4 C C3 GAQ . . . F 3 -41.032 102.043 4.79 1 68.9 ? C3 GAQ 402 B 1 
HETATM 5 C C2 GAQ . . . F 3 -40.082 102.931 5.568 1 78.1 ? C2 GAQ 402 B 1 
HETATM 6 C C1 GAQ . . . F 3 -40.308 103.01 7.078 1 81.3 ? C1 GAQ 402 B 1 
HETATM 7 O O1 GAQ . . . F 3 -41.543 103.663 7.452 1 84.25 ? O1 GAQ 402 B 1 
#
_model_server_stats.io_time_ms              117 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           7 
#