data_1ZLR # _model_server_result.job_id x0B_BzOUnmrzmpL73a9RhQ _model_server_result.datetime_utc '2024-10-11 19:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zlr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 1ZLR # _exptl.entry_id 1ZLR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.194 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[AMINO(IMINO)METHYL]AMINO}-1-{4-[(4R)-4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL]PHENYL}ETHYL NICOTINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZLR _cell.length_a 121.001 _cell.length_b 121.001 _cell.length_c 121.001 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZLR _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 188 A SER 195 1_555 E B07 368 . A 368 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C18 H21 B N4 O5' _chem_comp.formula_weight 384.194 _chem_comp.id 368 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[AMINO(IMINO)METHYL]AMINO}-1-{4-[(4R)-4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL]PHENYL}ETHYL NICOTINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 368 sing 1 n y C01 C06 368 doub 2 n y C01 B07 368 sing 3 n n C02 C03 368 doub 4 n y C02 H02 368 sing 5 n n C03 C04 368 sing 6 n y C03 H03 368 sing 7 n n C04 C05 368 doub 8 n y C04 C12 368 sing 9 n n C05 C06 368 sing 10 n y C05 H05 368 sing 11 n n C06 H06 368 sing 12 n n B07 O08 368 sing 13 n n B07 O11 368 sing 14 n n O08 C09 368 sing 15 n n C09 C10 368 sing 16 n n C09 H091 368 sing 17 n n C09 H092 368 sing 18 n n C10 O11 368 sing 19 n n C10 C27 368 sing 20 n n C10 H10 368 sing 21 n n C12 C13 368 sing 22 n n C12 O18 368 sing 23 n n C12 H12 368 sing 24 n n C13 NP4 368 sing 25 n n C13 H131 368 sing 26 n n C13 H132 368 sing 27 n n NP4 C15 368 sing 28 n n NP4 HP4 368 sing 29 n n C15 NP6 368 sing 30 n n C15 NP7 368 doub 31 z n NP6 HP61 368 sing 32 n n NP6 HP62 368 sing 33 n n NP7 HP7 368 sing 34 n n O18 C19 368 sing 35 n n C19 O20 368 doub 36 n n C19 C21 368 sing 37 n n C21 C22 368 doub 38 n y C21 C26 368 sing 39 n y C22 C23 368 sing 40 n y C22 H22 368 sing 41 n n C23 C24 368 doub 42 n y C23 H23 368 sing 43 n n C24 NP5 368 sing 44 n y C24 H24 368 sing 45 n n NP5 C26 368 doub 46 n y C26 H26 368 sing 47 n n C27 O28 368 sing 48 n n C27 H271 368 sing 49 n n C27 H272 368 sing 50 n n O28 H28 368 sing 51 n n # _atom_sites.entry_id 1ZLR _atom_sites.fract_transf_matrix[1][1] 0.008264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1001 1 SO4 SO4 . C 2 SO4 A 1 1002 2 SO4 SO4 . D 2 SO4 A 1 1003 3 SO4 SO4 . E 3 368 A 1 901 900 368 368 . F 4 GOL A 1 900 900 GOL GOL . G 5 HOH A 1 1004 2 HOH WAT . G 5 HOH A 2 1005 3 HOH WAT . G 5 HOH A 3 1006 4 HOH WAT . G 5 HOH A 4 1007 5 HOH WAT . G 5 HOH A 5 1008 6 HOH WAT . G 5 HOH A 6 1009 7 HOH WAT . G 5 HOH A 7 1010 8 HOH WAT . G 5 HOH A 8 1011 9 HOH WAT . G 5 HOH A 9 1012 11 HOH WAT . G 5 HOH A 10 1013 12 HOH WAT . G 5 HOH A 11 1014 13 HOH WAT . G 5 HOH A 12 1015 14 HOH WAT . G 5 HOH A 13 1016 15 HOH WAT . G 5 HOH A 14 1017 16 HOH WAT . G 5 HOH A 15 1018 17 HOH WAT . G 5 HOH A 16 1019 18 HOH WAT . G 5 HOH A 17 1020 19 HOH WAT . G 5 HOH A 18 1021 21 HOH WAT . G 5 HOH A 19 1022 22 HOH WAT . G 5 HOH A 20 1023 24 HOH WAT . G 5 HOH A 21 1024 25 HOH WAT . G 5 HOH A 22 1025 26 HOH WAT . G 5 HOH A 23 1026 27 HOH WAT . G 5 HOH A 24 1027 28 HOH WAT . G 5 HOH A 25 1028 29 HOH WAT . G 5 HOH A 26 1029 30 HOH WAT . G 5 HOH A 27 1030 31 HOH WAT . G 5 HOH A 28 1031 32 HOH WAT . G 5 HOH A 29 1032 33 HOH WAT . G 5 HOH A 30 1033 34 HOH WAT . G 5 HOH A 31 1034 35 HOH WAT . G 5 HOH A 32 1035 36 HOH WAT . G 5 HOH A 33 1036 37 HOH WAT . G 5 HOH A 34 1037 38 HOH WAT . G 5 HOH A 35 1038 39 HOH WAT . G 5 HOH A 36 1039 40 HOH WAT . G 5 HOH A 37 1040 41 HOH WAT . G 5 HOH A 38 1041 42 HOH WAT . G 5 HOH A 39 1042 43 HOH WAT . G 5 HOH A 40 1043 44 HOH WAT . G 5 HOH A 41 1044 45 HOH WAT . G 5 HOH A 42 1045 46 HOH WAT . G 5 HOH A 43 1046 47 HOH WAT . G 5 HOH A 44 1047 48 HOH WAT . G 5 HOH A 45 1048 49 HOH WAT . G 5 HOH A 46 1049 50 HOH WAT . G 5 HOH A 47 1050 51 HOH WAT . G 5 HOH A 48 1051 52 HOH WAT . G 5 HOH A 49 1052 53 HOH WAT . G 5 HOH A 50 1053 54 HOH WAT . G 5 HOH A 51 1054 55 HOH WAT . G 5 HOH A 52 1055 56 HOH WAT . G 5 HOH A 53 1056 57 HOH WAT . G 5 HOH A 54 1057 58 HOH WAT . G 5 HOH A 55 1058 60 HOH WAT . G 5 HOH A 56 1059 61 HOH WAT . G 5 HOH A 57 1060 62 HOH WAT . G 5 HOH A 58 1061 63 HOH WAT . G 5 HOH A 59 1062 64 HOH WAT . G 5 HOH A 60 1063 65 HOH WAT . G 5 HOH A 61 1064 66 HOH WAT . G 5 HOH A 62 1065 67 HOH WAT . G 5 HOH A 63 1066 68 HOH WAT . G 5 HOH A 64 1067 69 HOH WAT . G 5 HOH A 65 1068 70 HOH WAT . G 5 HOH A 66 1069 71 HOH WAT . G 5 HOH A 67 1070 72 HOH WAT . G 5 HOH A 68 1071 73 HOH WAT . G 5 HOH A 69 1072 74 HOH WAT . G 5 HOH A 70 1073 75 HOH WAT . G 5 HOH A 71 1074 76 HOH WAT . G 5 HOH A 72 1075 77 HOH WAT . G 5 HOH A 73 1076 78 HOH WAT . G 5 HOH A 74 1077 79 HOH WAT . G 5 HOH A 75 1078 80 HOH WAT . G 5 HOH A 76 1079 81 HOH WAT . G 5 HOH A 77 1080 82 HOH WAT . G 5 HOH A 78 1081 83 HOH WAT . G 5 HOH A 79 1082 84 HOH WAT . G 5 HOH A 80 1083 85 HOH WAT . G 5 HOH A 81 1084 86 HOH WAT . G 5 HOH A 82 1085 87 HOH WAT . G 5 HOH A 83 1086 88 HOH WAT . G 5 HOH A 84 1087 89 HOH WAT . G 5 HOH A 85 1088 90 HOH WAT . G 5 HOH A 86 1089 91 HOH WAT . G 5 HOH A 87 1090 93 HOH WAT . G 5 HOH A 88 1091 94 HOH WAT . G 5 HOH A 89 1092 95 HOH WAT . G 5 HOH A 90 1093 96 HOH WAT . G 5 HOH A 91 1094 97 HOH WAT . G 5 HOH A 92 1095 100 HOH WAT . G 5 HOH A 93 1096 101 HOH WAT . G 5 HOH A 94 1097 102 HOH WAT . G 5 HOH A 95 1098 103 HOH WAT . G 5 HOH A 96 1099 104 HOH WAT . G 5 HOH A 97 1100 105 HOH WAT . G 5 HOH A 98 1101 106 HOH WAT . G 5 HOH A 99 1102 107 HOH WAT . G 5 HOH A 100 1103 108 HOH WAT . G 5 HOH A 101 1104 109 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 368 . . . E 3 8.911 72.03 84.77 1 50.87 ? C01 368 901 A 1 HETATM 2 C C02 368 . . . E 3 9.9 71.3 84.03 1 53.31 ? C02 368 901 A 1 HETATM 3 C C03 368 . . . E 3 9.869 71.26 82.61 1 54.28 ? C03 368 901 A 1 HETATM 4 C C04 368 . . . E 3 8.855 71.944 81.878 1 58.63 ? C04 368 901 A 1 HETATM 5 C C05 368 . . . E 3 7.863 72.685 82.616 1 56.56 ? C05 368 901 A 1 HETATM 6 C C06 368 . . . E 3 7.893 72.725 84.04 1 54.84 ? C06 368 901 A 1 HETATM 7 B B07 368 . . . E 3 8.972 72.049 86.292 1 46.15 ? B07 368 901 A 1 HETATM 8 O O08 368 . . . E 3 8.746 70.736 86.828 1 45.87 ? O08 368 901 A 1 HETATM 9 C C09 368 . . . E 3 7.806 70.841 87.886 1 44.66 ? C09 368 901 A 1 HETATM 10 C C10 368 . . . E 3 6.997 72.087 87.505 1 43.85 ? C10 368 901 A 1 HETATM 11 O O11 368 . . . E 3 7.977 72.904 86.896 1 44.62 ? O11 368 901 A 1 HETATM 12 C C12 368 . . . E 3 8.871 71.848 80.349 1 63.27 ? C12 368 901 A 1 HETATM 13 C C13 368 . . . E 3 9.968 72.657 79.645 1 64.21 ? C13 368 901 A 1 HETATM 14 N NP4 368 . . . E 3 11.198 71.852 79.627 1 65.73 ? NP4 368 901 A 1 HETATM 15 C C15 368 . . . E 3 12.149 71.852 78.688 1 65.23 ? C15 368 901 A 1 HETATM 16 N NP6 368 . . . E 3 13.44 71.8 79.032 1 65.55 ? NP6 368 901 A 1 HETATM 17 N NP7 368 . . . E 3 11.799 71.898 77.397 1 65.86 ? NP7 368 901 A 1 HETATM 18 O O18 368 . . . E 3 7.545 72.168 79.807 1 67.22 ? O18 368 901 A 1 HETATM 19 C C19 368 . . . E 3 6.546 71.231 79.803 1 70.54 ? C19 368 901 A 1 HETATM 20 O O20 368 . . . E 3 6.662 70.1 80.234 1 69.41 ? O20 368 901 A 1 HETATM 21 C C21 368 . . . E 3 5.285 71.787 79.199 1 72.41 ? C21 368 901 A 1 HETATM 22 C C22 368 . . . E 3 5.14 73.17 78.796 1 74.07 ? C22 368 901 A 1 HETATM 23 C C23 368 . . . E 3 3.911 73.626 78.227 1 74.72 ? C23 368 901 A 1 HETATM 24 C C24 368 . . . E 3 2.862 72.695 78.076 1 75.04 ? C24 368 901 A 1 HETATM 25 N NP5 368 . . . E 3 2.982 71.387 78.453 1 75.28 ? NP5 368 901 A 1 HETATM 26 C C26 368 . . . E 3 4.158 70.95 78.997 1 73.94 ? C26 368 901 A 1 HETATM 27 C C27 368 . . . E 3 6.4 72.751 88.752 1 41.98 ? C27 368 901 A 1 HETATM 28 O O28 368 . . . E 3 6.092 74.095 88.481 0 42.73 ? O28 368 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #