data_1ZM2
#
_model_server_result.job_id            9cyPURSZyDfN7CkN8nbS5Q 
_model_server_result.datetime_utc      '2024-12-04 04:04:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zm2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":843}' 
#
_entry.id    1ZM2 
#
_exptl.entry_id    1ZM2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.3 
_cell.angle_gamma         90 
_cell.entry_id            1ZM2 
_cell.length_a            330.63 
_cell.length_b            67.84 
_cell.length_c            191.5 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B 1 1 
C,D 2 1 
E,F,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 698 A ILE 698 1_555 A N DDE 699 A DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C DDE 699 A DDE 699 1_555 A N ARG 700 A ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 C C ILE 698 C ILE 698 1_555 C N DDE 699 C DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale4 C C DDE 699 C DDE 699 1_555 C N ARG 700 C ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 E C ILE 698 E ILE 698 1_555 E N DDE 699 E DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 E C DDE 699 E DDE 699 1_555 E N ARG 700 E ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale7 E NE2 DDE 699 E DDE 699 1_555 G C1D APR . E APR 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     1ZM2 
_atom_sites.fract_transf_matrix[1][1]    0.003025 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000715 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005366 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          G 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           APR 
_pdbx_nonpoly_scheme.pdb_strand_id    E 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      843 
_pdbx_nonpoly_scheme.auth_seq_num     699 
_pdbx_nonpoly_scheme.pdb_mon_id       APR 
_pdbx_nonpoly_scheme.auth_mon_id      HSR 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . G 3 -50.993 -44.947 94.606 1 68.12 ? N1 APR 843 E 1 
HETATM 2 C C2 APR . . . G 3 -51.397 -44.933 95.959 1 69.81 ? C2 APR 843 E 1 
HETATM 3 N N3 APR . . . G 3 -51.6 -43.93 96.781 1 69.25 ? N3 APR 843 E 1 
HETATM 4 C C4 APR . . . G 3 -51.351 -42.715 96.168 1 69.58 ? C4 APR 843 E 1 
HETATM 5 C C5 APR . . . G 3 -50.926 -42.55 94.805 1 68.6 ? C5 APR 843 E 1 
HETATM 6 C C6 APR . . . G 3 -50.73 -43.74 93.992 1 67.49 ? C6 APR 843 E 1 
HETATM 7 N N6 APR . . . G 3 -50.35 -43.725 92.722 1 64.95 ? N6 APR 843 E 1 
HETATM 8 N N7 APR . . . G 3 -50.756 -41.21 94.51 1 68.85 ? N7 APR 843 E 1 
HETATM 9 C C8 APR . . . G 3 -51.092 -40.542 95.644 1 69.76 ? C8 APR 843 E 1 
HETATM 10 N N9 APR . . . G 3 -51.47 -41.397 96.685 1 70.2 ? N9 APR 843 E 1 
HETATM 11 C C1' APR . . . G 3 -51.925 -41.067 98.103 1 72.19 ? C1' APR 843 E 1 
HETATM 12 C C2' APR . . . G 3 -53.032 -39.982 98.18 1 72.86 ? C2' APR 843 E 1 
HETATM 13 O O2' APR . . . G 3 -52.484 -38.597 98.203 1 73.83 ? O2' APR 843 E 1 
HETATM 14 C C3' APR . . . G 3 -53.817 -40.313 99.482 1 73.38 ? C3' APR 843 E 1 
HETATM 15 O O3' APR . . . G 3 -53.624 -39.415 100.588 1 72.94 ? O3' APR 843 E 1 
HETATM 16 O O4' APR . . . G 3 -52.38 -42.197 98.822 1 72.91 ? O4' APR 843 E 1 
HETATM 17 C C4' APR . . . G 3 -53.433 -41.845 99.737 1 74.33 ? C4' APR 843 E 1 
HETATM 18 C C5' APR . . . G 3 -54.506 -42.836 99.529 1 77.21 ? C5' APR 843 E 1 
HETATM 19 O O5' APR . . . G 3 -54.931 -43.179 100.803 1 82.15 ? O5' APR 843 E 1 
HETATM 20 P PA APR . . . G 3 -55.465 -44.632 101.019 1 86.36 ? PA APR 843 E 1 
HETATM 21 O O1A APR . . . G 3 -55.865 -44.75 102.505 1 86.57 ? O1A APR 843 E 1 
HETATM 22 O O2A APR . . . G 3 -54.352 -45.602 100.526 1 85.75 ? O2A APR 843 E 1 
HETATM 23 O O3A APR . . . G 3 -56.799 -44.599 100.087 1 83.79 ? O3A APR 843 E 1 
HETATM 24 P PB APR . . . G 3 -58.165 -45.528 100.565 1 82.99 ? PB APR 843 E 1 
HETATM 25 O O1B APR . . . G 3 -57.93 -46.795 101.368 1 79.93 ? O1B APR 843 E 1 
HETATM 26 O O2B APR . . . G 3 -59.074 -44.656 101.42 1 82.04 ? O2B APR 843 E 1 
HETATM 27 O O5D APR . . . G 3 -58.893 -45.781 99.244 1 80.17 ? O5D APR 843 E 1 
HETATM 28 C C5D APR . . . G 3 -59.707 -44.862 98.597 1 74.4 ? C5D APR 843 E 1 
HETATM 29 O O4D APR . . . G 3 -59.623 -45.844 96.506 1 69.68 ? O4D APR 843 E 1 
HETATM 30 C C1D APR . . . G 3 -59.569 -47.258 96.071 1 68.44 ? C1D APR 843 E 1 
HETATM 31 O O2D APR . . . G 3 -61.277 -48.931 96.89 1 70.93 ? O2D APR 843 E 1 
HETATM 32 C C2D APR . . . G 3 -60.279 -47.943 97.243 1 68.71 ? C2D APR 843 E 1 
HETATM 33 O O3D APR . . . G 3 -62.537 -46.961 97.639 1 68.79 ? O3D APR 843 E 1 
HETATM 34 C C3D APR . . . G 3 -61.126 -46.877 97.952 1 69.48 ? C3D APR 843 E 1 
HETATM 35 C C4D APR . . . G 3 -60.561 -45.548 97.607 1 71.17 ? C4D APR 843 E 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           35 
#