data_1ZM4
#
_model_server_result.job_id            -4crwc6_XGrPBUPuY7zGNQ 
_model_server_result.datetime_utc      '2025-07-15 08:27:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zm4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":700}' 
#
_entry.id    1ZM4 
#
_exptl.entry_id    1ZM4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              667.48 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.42 
_cell.angle_gamma         90 
_cell.entry_id            1ZM4 
_cell.length_a            326.95 
_cell.length_b            68.58 
_cell.length_c            190.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZM4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G 1 1 
C,D,H 2 1 
E,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 698 A ILE 698 1_555 A N DDE 699 A DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 A C DDE 699 A DDE 699 1_555 A N ARG 700 A ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 C C ILE 698 C ILE 698 1_555 C N DDE 699 C DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 C C DDE 699 C DDE 699 1_555 C N ARG 700 C ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 E C ILE 698 E ILE 698 1_555 E N DDE 699 E DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 E C DDE 699 E DDE 699 1_555 E N ARG 700 E ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C20 H27 N7 O13 P2 S' 
_chem_comp.formula_weight    667.48 
_chem_comp.id                TAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A TAD doub 333 n n 
PA O2A TAD sing 334 n n 
PA O5B TAD sing 335 n n 
PA C3 TAD sing 336 n n 
O2A HOA2 TAD sing 337 n n 
O5B C5B TAD sing 338 n n 
C5B C4B TAD sing 339 n n 
C5B H51A TAD sing 340 n n 
C5B H52A TAD sing 341 n n 
C4B O4B TAD sing 342 n n 
C4B C3B TAD sing 343 n n 
C4B H4B TAD sing 344 n n 
O4B C1B TAD sing 345 n n 
C3B O3B TAD sing 346 n n 
C3B C2B TAD sing 347 n n 
C3B H3B TAD sing 348 n n 
O3B HO3A TAD sing 349 n n 
C2B O2B TAD sing 350 n n 
C2B C1B TAD sing 351 n n 
C2B H2B TAD sing 352 n n 
O2B HO2A TAD sing 353 n n 
C1B N9A TAD sing 354 n n 
C1B H1B TAD sing 355 n n 
N9A C8A TAD sing 356 n y 
N9A C4A TAD sing 357 n y 
C8A N7A TAD doub 358 n y 
C8A H8A TAD sing 359 n n 
N7A C5A TAD sing 360 n y 
C5A C6A TAD sing 361 n y 
C5A C4A TAD doub 362 n y 
C6A N6A TAD sing 363 n n 
C6A N1A TAD doub 364 n y 
N6A H61A TAD sing 365 n n 
N6A H62A TAD sing 366 n n 
N1A C2A TAD sing 367 n y 
C2A N3A TAD doub 368 n y 
C2A H2A TAD sing 369 n n 
N3A C4A TAD sing 370 n y 
C3 PN TAD sing 371 n n 
C3 H31 TAD sing 372 n n 
C3 H32 TAD sing 373 n n 
PN O1N TAD doub 374 n n 
PN O2N TAD sing 375 n n 
PN O5D TAD sing 376 n n 
O2N HON2 TAD sing 377 n n 
O5D C5D TAD sing 378 n n 
C5D C4D TAD sing 379 n n 
C5D H51N TAD sing 380 n n 
C5D H52N TAD sing 381 n n 
C4D O4D TAD sing 382 n n 
C4D C3D TAD sing 383 n n 
C4D H4D TAD sing 384 n n 
O4D C1D TAD sing 385 n n 
C3D O3D TAD sing 386 n n 
C3D C2D TAD sing 387 n n 
C3D H3D TAD sing 388 n n 
O3D HO3N TAD sing 389 n n 
C2D O2D TAD sing 390 n n 
C2D C1D TAD sing 391 n n 
C2D H2D TAD sing 392 n n 
O2D HO2N TAD sing 393 n n 
C1D C2N TAD sing 394 n n 
C1D H1D TAD sing 395 n n 
C2N N3N TAD doub 396 n y 
C2N S1N TAD sing 397 n y 
N3N C4N TAD sing 398 n y 
C4N C5N TAD doub 399 n y 
C4N C6N TAD sing 400 n n 
C5N S1N TAD sing 401 n y 
C5N H5N TAD sing 402 n n 
C6N O6N TAD doub 403 n n 
C6N N6N TAD sing 404 n n 
N6N H61N TAD sing 405 n n 
N6N H62N TAD sing 406 n n 
#
_atom_sites.entry_id                     1ZM4 
_atom_sites.fract_transf_matrix[1][1]    0.003059 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00073 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 TAD B 1 700 700 TAD TAD . 
H 3 TAD D 1 701 700 TAD TAD . 
I 3 TAD F 1 702 700 TAD TAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA TAD . . . G 3 3.113 -4.077 94.437 1 43.75 ? PA TAD 700 B 1 
HETATM 2 O O1A TAD . . . G 3 1.668 -4.063 94.765 1 44.3 ? O1A TAD 700 B 1 
HETATM 3 O O2A TAD . . . G 3 4.012 -3.118 95.115 1 44.53 ? O2A TAD 700 B 1 
HETATM 4 O O5B TAD . . . G 3 3.236 -3.926 92.845 1 40.97 ? O5B TAD 700 B 1 
HETATM 5 C C5B TAD . . . G 3 3.616 -2.642 92.365 1 36.82 ? C5B TAD 700 B 1 
HETATM 6 C C4B TAD . . . G 3 3.763 -2.634 90.847 1 34.14 ? C4B TAD 700 B 1 
HETATM 7 O O4B TAD . . . G 3 4.184 -1.284 90.602 1 32.81 ? O4B TAD 700 B 1 
HETATM 8 C C3B TAD . . . G 3 4.868 -3.561 90.33 1 32.79 ? C3B TAD 700 B 1 
HETATM 9 O O3B TAD . . . G 3 4.55 -4.092 89.04 1 33.84 ? O3B TAD 700 B 1 
HETATM 10 C C2B TAD . . . G 3 6.02 -2.583 90.133 1 32.03 ? C2B TAD 700 B 1 
HETATM 11 O O2B TAD . . . G 3 6.839 -3.125 89.094 1 31.84 ? O2B TAD 700 B 1 
HETATM 12 C C1B TAD . . . G 3 5.193 -1.414 89.596 1 29.82 ? C1B TAD 700 B 1 
HETATM 13 N N9A TAD . . . G 3 5.93 -0.137 89.485 1 27.47 ? N9A TAD 700 B 1 
HETATM 14 C C8A TAD . . . G 3 5.7 0.798 88.564 1 27.23 ? C8A TAD 700 B 1 
HETATM 15 N N7A TAD . . . G 3 6.541 1.812 88.744 1 26.05 ? N7A TAD 700 B 1 
HETATM 16 C C5A TAD . . . G 3 7.309 1.527 89.792 1 25.48 ? C5A TAD 700 B 1 
HETATM 17 C C6A TAD . . . G 3 8.354 2.189 90.427 1 25.05 ? C6A TAD 700 B 1 
HETATM 18 N N6A TAD . . . G 3 8.833 3.324 89.919 1 25.16 ? N6A TAD 700 B 1 
HETATM 19 N N1A TAD . . . G 3 8.929 1.59 91.484 1 24.31 ? N1A TAD 700 B 1 
HETATM 20 C C2A TAD . . . G 3 8.547 0.403 91.926 1 23.69 ? C2A TAD 700 B 1 
HETATM 21 N N3A TAD . . . G 3 7.565 -0.246 91.323 1 24.58 ? N3A TAD 700 B 1 
HETATM 22 C C4A TAD . . . G 3 6.924 0.28 90.267 1 27.07 ? C4A TAD 700 B 1 
HETATM 23 C C3 TAD . . . G 3 3.729 -5.753 94.703 1 43.97 ? C3 TAD 700 B 1 
HETATM 24 P PN TAD . . . G 3 2.208 -6.722 94.68 1 46.14 ? PN TAD 700 B 1 
HETATM 25 O O1N TAD . . . G 3 1.455 -6.305 93.474 1 47.42 ? O1N TAD 700 B 1 
HETATM 26 O O2N TAD . . . G 3 1.557 -6.568 95.998 1 47.59 ? O2N TAD 700 B 1 
HETATM 27 O O5D TAD . . . G 3 2.709 -8.237 94.476 1 44.35 ? O5D TAD 700 B 1 
HETATM 28 C C5D TAD . . . G 3 3.265 -9.005 95.544 1 41.45 ? C5D TAD 700 B 1 
HETATM 29 C C4D TAD . . . G 3 3.752 -10.369 95.052 1 40.06 ? C4D TAD 700 B 1 
HETATM 30 O O4D TAD . . . G 3 4.662 -10.257 93.95 1 38.25 ? O4D TAD 700 B 1 
HETATM 31 C C3D TAD . . . G 3 4.586 -11.079 96.119 1 40.61 ? C3D TAD 700 B 1 
HETATM 32 O O3D TAD . . . G 3 3.757 -11.782 97.053 1 41.8 ? O3D TAD 700 B 1 
HETATM 33 C C2D TAD . . . G 3 5.411 -12.064 95.291 1 38.93 ? C2D TAD 700 B 1 
HETATM 34 O O2D TAD . . . G 3 4.893 -13.387 95.463 1 38.97 ? O2D TAD 700 B 1 
HETATM 35 C C1D TAD . . . G 3 5.198 -11.583 93.852 1 36.3 ? C1D TAD 700 B 1 
HETATM 36 C C2N TAD . . . G 3 6.468 -11.448 93.016 1 34.34 ? C2N TAD 700 B 1 
HETATM 37 N N3N TAD . . . G 3 6.662 -10.529 92.074 1 32.33 ? N3N TAD 700 B 1 
HETATM 38 C C4N TAD . . . G 3 7.851 -10.613 91.474 1 30.73 ? C4N TAD 700 B 1 
HETATM 39 C C5N TAD . . . G 3 8.691 -11.564 91.881 1 31.87 ? C5N TAD 700 B 1 
HETATM 40 S S1N TAD . . . G 3 7.867 -12.423 93.101 1 32.25 ? S1N TAD 700 B 1 
HETATM 41 C C6N TAD . . . G 3 8.204 -9.694 90.305 1 30.61 ? C6N TAD 700 B 1 
HETATM 42 O O6N TAD . . . G 3 9.256 -9.826 89.679 1 27.93 ? O6N TAD 700 B 1 
HETATM 43 N N6N TAD . . . G 3 7.271 -8.802 89.992 1 29.07 ? N6N TAD 700 B 1 
#
_model_server_stats.io_time_ms              134 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#