data_1ZM4 # _model_server_result.job_id RNTCdrDnucwNVbJiCOeV1A _model_server_result.datetime_utc '2025-07-18 03:59:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":702}' # _entry.id 1ZM4 # _exptl.entry_id 1ZM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.48 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.42 _cell.angle_gamma 90 _cell.entry_id 1ZM4 _cell.length_a 326.95 _cell.length_b 68.58 _cell.length_c 190.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D,H 2 1 E,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 698 A ILE 698 1_555 A N DDE 699 A DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C DDE 699 A DDE 699 1_555 A N ARG 700 A ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C ILE 698 C ILE 698 1_555 C N DDE 699 C DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 C C DDE 699 C DDE 699 1_555 C N ARG 700 C ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 E C ILE 698 E ILE 698 1_555 E N DDE 699 E DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 E C DDE 699 E DDE 699 1_555 E N ARG 700 E ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C20 H27 N7 O13 P2 S' _chem_comp.formula_weight 667.48 _chem_comp.id TAD _chem_comp.mon_nstd_flag . _chem_comp.name 'BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A TAD doub 333 n n PA O2A TAD sing 334 n n PA O5B TAD sing 335 n n PA C3 TAD sing 336 n n O2A HOA2 TAD sing 337 n n O5B C5B TAD sing 338 n n C5B C4B TAD sing 339 n n C5B H51A TAD sing 340 n n C5B H52A TAD sing 341 n n C4B O4B TAD sing 342 n n C4B C3B TAD sing 343 n n C4B H4B TAD sing 344 n n O4B C1B TAD sing 345 n n C3B O3B TAD sing 346 n n C3B C2B TAD sing 347 n n C3B H3B TAD sing 348 n n O3B HO3A TAD sing 349 n n C2B O2B TAD sing 350 n n C2B C1B TAD sing 351 n n C2B H2B TAD sing 352 n n O2B HO2A TAD sing 353 n n C1B N9A TAD sing 354 n n C1B H1B TAD sing 355 n n N9A C8A TAD sing 356 n y N9A C4A TAD sing 357 n y C8A N7A TAD doub 358 n y C8A H8A TAD sing 359 n n N7A C5A TAD sing 360 n y C5A C6A TAD sing 361 n y C5A C4A TAD doub 362 n y C6A N6A TAD sing 363 n n C6A N1A TAD doub 364 n y N6A H61A TAD sing 365 n n N6A H62A TAD sing 366 n n N1A C2A TAD sing 367 n y C2A N3A TAD doub 368 n y C2A H2A TAD sing 369 n n N3A C4A TAD sing 370 n y C3 PN TAD sing 371 n n C3 H31 TAD sing 372 n n C3 H32 TAD sing 373 n n PN O1N TAD doub 374 n n PN O2N TAD sing 375 n n PN O5D TAD sing 376 n n O2N HON2 TAD sing 377 n n O5D C5D TAD sing 378 n n C5D C4D TAD sing 379 n n C5D H51N TAD sing 380 n n C5D H52N TAD sing 381 n n C4D O4D TAD sing 382 n n C4D C3D TAD sing 383 n n C4D H4D TAD sing 384 n n O4D C1D TAD sing 385 n n C3D O3D TAD sing 386 n n C3D C2D TAD sing 387 n n C3D H3D TAD sing 388 n n O3D HO3N TAD sing 389 n n C2D O2D TAD sing 390 n n C2D C1D TAD sing 391 n n C2D H2D TAD sing 392 n n O2D HO2N TAD sing 393 n n C1D C2N TAD sing 394 n n C1D H1D TAD sing 395 n n C2N N3N TAD doub 396 n y C2N S1N TAD sing 397 n y N3N C4N TAD sing 398 n y C4N C5N TAD doub 399 n y C4N C6N TAD sing 400 n n C5N S1N TAD sing 401 n y C5N H5N TAD sing 402 n n C6N O6N TAD doub 403 n n C6N N6N TAD sing 404 n n N6N H61N TAD sing 405 n n N6N H62N TAD sing 406 n n # _atom_sites.entry_id 1ZM4 _atom_sites.fract_transf_matrix[1][1] 0.003059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00073 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005405 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 TAD B 1 700 700 TAD TAD . H 3 TAD D 1 701 700 TAD TAD . I 3 TAD F 1 702 700 TAD TAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA TAD . . . I 3 -51.418 -38.155 93.047 1 48.57 ? PA TAD 702 F 1 HETATM 2 O O1A TAD . . . I 3 -52.86 -38.067 93.37 1 49.84 ? O1A TAD 702 F 1 HETATM 3 O O2A TAD . . . I 3 -50.477 -37.237 93.727 1 49.72 ? O2A TAD 702 F 1 HETATM 4 O O5B TAD . . . I 3 -51.279 -38.024 91.453 1 46.65 ? O5B TAD 702 F 1 HETATM 5 C C5B TAD . . . I 3 -50.839 -36.76 90.969 1 42.83 ? C5B TAD 702 F 1 HETATM 6 C C4B TAD . . . I 3 -50.681 -36.766 89.452 1 39.33 ? C4B TAD 702 F 1 HETATM 7 O O4B TAD . . . I 3 -50.192 -35.439 89.21 1 37.84 ? O4B TAD 702 F 1 HETATM 8 C C3B TAD . . . I 3 -49.616 -37.75 88.954 1 38 ? C3B TAD 702 F 1 HETATM 9 O O3B TAD . . . I 3 -49.948 -38.268 87.662 1 39.19 ? O3B TAD 702 F 1 HETATM 10 C C2B TAD . . . I 3 -48.413 -36.832 88.766 1 36.9 ? C2B TAD 702 F 1 HETATM 11 O O2B TAD . . . I 3 -47.617 -37.414 87.731 1 37.11 ? O2B TAD 702 F 1 HETATM 12 C C1B TAD . . . I 3 -49.178 -35.626 88.216 1 35.82 ? C1B TAD 702 F 1 HETATM 13 N N9A TAD . . . I 3 -48.375 -34.39 88.1 1 31.43 ? N9A TAD 702 F 1 HETATM 14 C C8A TAD . . . I 3 -48.554 -33.449 87.174 1 30.99 ? C8A TAD 702 F 1 HETATM 15 N N7A TAD . . . I 3 -47.667 -32.476 87.359 1 30.05 ? N7A TAD 702 F 1 HETATM 16 C C5A TAD . . . I 3 -46.919 -32.792 88.412 1 29.54 ? C5A TAD 702 F 1 HETATM 17 C C6A TAD . . . I 3 -45.849 -32.175 89.048 1 28.21 ? C6A TAD 702 F 1 HETATM 18 N N6A TAD . . . I 3 -45.326 -31.065 88.53 1 27.64 ? N6A TAD 702 F 1 HETATM 19 N N1A TAD . . . I 3 -45.309 -32.794 90.112 1 27.24 ? N1A TAD 702 F 1 HETATM 20 C C2A TAD . . . I 3 -45.752 -33.96 90.553 1 27.16 ? C2A TAD 702 F 1 HETATM 21 N N3A TAD . . . I 3 -46.762 -34.568 89.948 1 28.27 ? N3A TAD 702 F 1 HETATM 22 C C4A TAD . . . I 3 -47.367 -34.018 88.887 1 29.34 ? C4A TAD 702 F 1 HETATM 23 C C3 TAD . . . I 3 -50.886 -39.857 93.323 1 48.19 ? C3 TAD 702 F 1 HETATM 24 P PN TAD . . . I 3 -52.453 -40.746 93.295 1 50.61 ? PN TAD 702 F 1 HETATM 25 O O1N TAD . . . I 3 -53.181 -40.299 92.083 1 51.08 ? O1N TAD 702 F 1 HETATM 26 O O2N TAD . . . I 3 -53.107 -40.564 94.609 1 51.43 ? O2N TAD 702 F 1 HETATM 27 O O5D TAD . . . I 3 -52.014 -42.283 93.094 1 47.6 ? O5D TAD 702 F 1 HETATM 28 C C5D TAD . . . I 3 -51.51 -43.082 94.166 1 44.03 ? C5D TAD 702 F 1 HETATM 29 C C4D TAD . . . I 3 -51.096 -44.474 93.684 1 42.57 ? C4D TAD 702 F 1 HETATM 30 O O4D TAD . . . I 3 -50.169 -44.411 92.595 1 40.39 ? O4D TAD 702 F 1 HETATM 31 C C3D TAD . . . I 3 -50.304 -45.221 94.756 1 42.79 ? C3D TAD 702 F 1 HETATM 32 O O3D TAD . . . I 3 -51.176 -45.876 95.685 1 44.15 ? O3D TAD 702 F 1 HETATM 33 C C2D TAD . . . I 3 -49.529 -46.252 93.938 1 41.01 ? C2D TAD 702 F 1 HETATM 34 O O2D TAD . . . I 3 -50.129 -47.54 94.106 1 41.97 ? O2D TAD 702 F 1 HETATM 35 C C1D TAD . . . I 3 -49.712 -45.765 92.497 1 37.07 ? C1D TAD 702 F 1 HETATM 36 C C2N TAD . . . I 3 -48.435 -45.704 91.664 1 35.04 ? C2N TAD 702 F 1 HETATM 37 N N3N TAD . . . I 3 -48.187 -44.799 90.72 1 32.55 ? N3N TAD 702 F 1 HETATM 38 C C4N TAD . . . I 3 -46.999 -44.946 90.13 1 30.21 ? C4N TAD 702 F 1 HETATM 39 C C5N TAD . . . I 3 -46.214 -45.94 90.547 1 31.91 ? C5N TAD 702 F 1 HETATM 40 S S1N TAD . . . I 3 -47.093 -46.755 91.76 1 32.65 ? S1N TAD 702 F 1 HETATM 41 C C6N TAD . . . I 3 -46.596 -44.047 88.963 1 30.34 ? C6N TAD 702 F 1 HETATM 42 O O6N TAD . . . I 3 -45.541 -44.222 88.354 1 27.69 ? O6N TAD 702 F 1 HETATM 43 N N6N TAD . . . I 3 -47.489 -43.123 88.633 1 27.14 ? N6N TAD 702 F 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #