data_1ZM5 # _model_server_result.job_id SzWQgTe7716XVhNvHsN7ow _model_server_result.datetime_utc '2025-03-06 10:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 1ZM5 # _exptl.entry_id 1ZM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZM5 _cell.length_a 91.077 _cell.length_b 91.077 _cell.length_c 205.551 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C MSE 1 A MSE 1 1_555 B N LEU 2 A LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C HIS 4 A HIS 4 1_555 B N MSE 5 A MSE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale3 B C MSE 5 A MSE 5 1_555 B N VAL 6 A VAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale4 B C ILE 69 A ILE 69 1_555 B N MSE 70 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C MSE 70 A MSE 70 1_555 B N ARG 71 A ARG 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C ASN 168 A ASN 168 1_555 B N MSE 169 A MSE 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C MSE 169 A MSE 169 1_555 B N THR 170 A THR 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 B ND1 HIS 150 A HIS 150 1_555 D CU CU . A CU 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 B NE2 HIS 161 A HIS 161 1_555 D CU CU . A CU 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 B NE2 HIS 163 A HIS 163 1_555 D CU CU . A CU 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 D CU CU . A CU 300 1_555 F O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? hydrog WATSON-CRICK hydrog1 A N1 DG 3 B DG 3 1_555 A N3 DC 16 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 3 B DG 3 1_555 A O2 DC 16 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 3 B DG 3 1_555 A N4 DC 16 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 4 B DC 4 1_555 A N1 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 4 B DC 4 1_555 A O6 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 4 B DC 4 1_555 A N2 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 5 B DA 5 1_555 A N3 DT 14 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 5 B DA 5 1_555 A O4 DT 14 B DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 6 B DC 6 1_555 A N1 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 6 B DC 6 1_555 A O6 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 6 B DC 6 1_555 A N2 DG 13 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 7 B DC 7 1_555 A N1 DG 12 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 7 B DC 7 1_555 A O6 DG 12 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 7 B DC 7 1_555 A N2 DG 12 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DA MISPAIR' hydrog15 A N2 DG 8 B DG 8 1_555 A N1 DA 10 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 445 n n S O2 SO4 doub 446 n n S O3 SO4 sing 447 n n S O4 SO4 sing 448 n n # _atom_sites.entry_id 1ZM5 _atom_sites.fract_transf_matrix[1][1] 0.01098 _atom_sites.fract_transf_matrix[1][2] 0.006339 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004865 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 302 302 SO4 SO4 . D 4 CU A 1 300 300 CU 1CU . E 5 HOH B 1 303 7 HOH HOH . E 5 HOH B 2 304 8 HOH HOH . E 5 HOH B 3 305 9 HOH HOH . E 5 HOH B 4 306 12 HOH HOH . E 5 HOH B 5 307 16 HOH HOH . E 5 HOH B 6 308 31 HOH HOH . E 5 HOH B 7 309 32 HOH HOH . E 5 HOH B 8 310 35 HOH HOH . E 5 HOH B 9 311 36 HOH HOH . E 5 HOH B 10 312 43 HOH HOH . E 5 HOH B 11 313 44 HOH HOH . E 5 HOH B 12 314 47 HOH HOH . E 5 HOH B 13 315 49 HOH HOH . E 5 HOH B 14 316 52 HOH HOH . E 5 HOH B 15 317 55 HOH HOH . E 5 HOH B 16 318 59 HOH HOH . E 5 HOH B 17 319 66 HOH HOH . E 5 HOH B 18 320 67 HOH HOH . E 5 HOH B 19 321 73 HOH HOH . E 5 HOH B 20 322 76 HOH HOH . E 5 HOH B 21 323 84 HOH HOH . E 5 HOH B 22 324 85 HOH HOH . E 5 HOH B 23 325 86 HOH HOH . E 5 HOH B 24 326 87 HOH HOH . E 5 HOH B 25 327 88 HOH HOH . E 5 HOH B 26 328 89 HOH HOH . E 5 HOH B 27 329 101 HOH HOH . E 5 HOH B 28 330 104 HOH HOH . E 5 HOH B 29 331 105 HOH HOH . E 5 HOH B 30 332 113 HOH HOH . E 5 HOH B 31 333 118 HOH HOH . E 5 HOH B 32 334 122 HOH HOH . E 5 HOH B 33 335 131 HOH HOH . E 5 HOH B 34 336 134 HOH HOH . E 5 HOH B 35 337 135 HOH HOH . E 5 HOH B 36 338 144 HOH HOH . E 5 HOH B 37 339 147 HOH HOH . E 5 HOH B 38 340 154 HOH HOH . E 5 HOH B 39 341 164 HOH HOH . E 5 HOH B 40 342 166 HOH HOH . E 5 HOH B 41 343 172 HOH HOH . E 5 HOH B 42 344 183 HOH HOH . E 5 HOH B 43 345 191 HOH HOH . E 5 HOH B 44 346 193 HOH HOH . E 5 HOH B 45 347 195 HOH HOH . E 5 HOH B 46 348 210 HOH HOH . E 5 HOH B 47 349 216 HOH HOH . E 5 HOH B 48 350 219 HOH HOH . E 5 HOH B 49 351 226 HOH HOH . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 2 HOH HOH . F 5 HOH A 3 303 3 HOH HOH . F 5 HOH A 4 304 4 HOH HOH . F 5 HOH A 5 305 5 HOH HOH . F 5 HOH A 6 306 6 HOH HOH . F 5 HOH A 7 307 10 HOH HOH . F 5 HOH A 8 308 11 HOH HOH . F 5 HOH A 9 309 13 HOH HOH . F 5 HOH A 10 310 14 HOH HOH . F 5 HOH A 11 311 15 HOH HOH . F 5 HOH A 12 312 17 HOH HOH . F 5 HOH A 13 313 18 HOH HOH . F 5 HOH A 14 314 19 HOH HOH . F 5 HOH A 15 315 20 HOH HOH . F 5 HOH A 16 316 21 HOH HOH . F 5 HOH A 17 317 22 HOH HOH . F 5 HOH A 18 318 23 HOH HOH . F 5 HOH A 19 319 24 HOH HOH . F 5 HOH A 20 320 26 HOH HOH . F 5 HOH A 21 321 27 HOH HOH . F 5 HOH A 22 322 28 HOH HOH . F 5 HOH A 23 323 29 HOH HOH . F 5 HOH A 24 324 30 HOH HOH . F 5 HOH A 25 325 33 HOH HOH . F 5 HOH A 26 326 34 HOH HOH . F 5 HOH A 27 327 37 HOH HOH . F 5 HOH A 28 328 38 HOH HOH . F 5 HOH A 29 329 39 HOH HOH . F 5 HOH A 30 330 40 HOH HOH . F 5 HOH A 31 331 41 HOH HOH . F 5 HOH A 32 332 42 HOH HOH . F 5 HOH A 33 333 45 HOH HOH . F 5 HOH A 34 334 46 HOH HOH . F 5 HOH A 35 335 48 HOH HOH . F 5 HOH A 36 336 50 HOH HOH . F 5 HOH A 37 337 51 HOH HOH . F 5 HOH A 38 338 53 HOH HOH . F 5 HOH A 39 339 56 HOH HOH . F 5 HOH A 40 340 57 HOH HOH . F 5 HOH A 41 341 58 HOH HOH . F 5 HOH A 42 342 60 HOH HOH . F 5 HOH A 43 343 61 HOH HOH . F 5 HOH A 44 344 62 HOH HOH . F 5 HOH A 45 345 63 HOH HOH . F 5 HOH A 46 346 64 HOH HOH . F 5 HOH A 47 347 65 HOH HOH . F 5 HOH A 48 348 68 HOH HOH . F 5 HOH A 49 349 69 HOH HOH . F 5 HOH A 50 350 70 HOH HOH . F 5 HOH A 51 351 71 HOH HOH . F 5 HOH A 52 352 72 HOH HOH . F 5 HOH A 53 353 74 HOH HOH . F 5 HOH A 54 354 75 HOH HOH . F 5 HOH A 55 355 77 HOH HOH . F 5 HOH A 56 356 79 HOH HOH . F 5 HOH A 57 357 80 HOH HOH . F 5 HOH A 58 358 81 HOH HOH . F 5 HOH A 59 359 82 HOH HOH . F 5 HOH A 60 360 83 HOH HOH . F 5 HOH A 61 361 90 HOH HOH . F 5 HOH A 62 362 91 HOH HOH . F 5 HOH A 63 363 92 HOH HOH . F 5 HOH A 64 364 93 HOH HOH . F 5 HOH A 65 365 94 HOH HOH . F 5 HOH A 66 366 96 HOH HOH . F 5 HOH A 67 367 98 HOH HOH . F 5 HOH A 68 368 99 HOH HOH . F 5 HOH A 69 369 100 HOH HOH . F 5 HOH A 70 370 102 HOH HOH . F 5 HOH A 71 371 103 HOH HOH . F 5 HOH A 72 372 106 HOH HOH . F 5 HOH A 73 373 107 HOH HOH . F 5 HOH A 74 374 108 HOH HOH . F 5 HOH A 75 375 109 HOH HOH . F 5 HOH A 76 376 110 HOH HOH . F 5 HOH A 77 377 111 HOH HOH . F 5 HOH A 78 378 112 HOH HOH . F 5 HOH A 79 379 114 HOH HOH . F 5 HOH A 80 380 115 HOH HOH . F 5 HOH A 81 381 116 HOH HOH . F 5 HOH A 82 382 117 HOH HOH . F 5 HOH A 83 383 120 HOH HOH . F 5 HOH A 84 384 121 HOH HOH . F 5 HOH A 85 385 123 HOH HOH . F 5 HOH A 86 386 124 HOH HOH . F 5 HOH A 87 387 125 HOH HOH . F 5 HOH A 88 388 126 HOH HOH . F 5 HOH A 89 389 127 HOH HOH . F 5 HOH A 90 390 128 HOH HOH . F 5 HOH A 91 391 129 HOH HOH . F 5 HOH A 92 392 130 HOH HOH . F 5 HOH A 93 393 132 HOH HOH . F 5 HOH A 94 394 133 HOH HOH . F 5 HOH A 95 395 136 HOH HOH . F 5 HOH A 96 396 137 HOH HOH . F 5 HOH A 97 397 138 HOH HOH . F 5 HOH A 98 398 139 HOH HOH . F 5 HOH A 99 399 140 HOH HOH . F 5 HOH A 100 400 141 HOH HOH . F 5 HOH A 101 401 142 HOH HOH . F 5 HOH A 102 402 143 HOH HOH . F 5 HOH A 103 403 145 HOH HOH . F 5 HOH A 104 404 146 HOH HOH . F 5 HOH A 105 405 148 HOH HOH . F 5 HOH A 106 406 149 HOH HOH . F 5 HOH A 107 407 150 HOH HOH . F 5 HOH A 108 408 151 HOH HOH . F 5 HOH A 109 409 152 HOH HOH . F 5 HOH A 110 410 153 HOH HOH . F 5 HOH A 111 411 155 HOH HOH . F 5 HOH A 112 412 156 HOH HOH . F 5 HOH A 113 413 157 HOH HOH . F 5 HOH A 114 414 158 HOH HOH . F 5 HOH A 115 415 159 HOH HOH . F 5 HOH A 116 416 161 HOH HOH . F 5 HOH A 117 417 162 HOH HOH . F 5 HOH A 118 418 163 HOH HOH . F 5 HOH A 119 419 165 HOH HOH . F 5 HOH A 120 420 167 HOH HOH . F 5 HOH A 121 421 168 HOH HOH . F 5 HOH A 122 422 169 HOH HOH . F 5 HOH A 123 423 170 HOH HOH . F 5 HOH A 124 424 171 HOH HOH . F 5 HOH A 125 425 173 HOH HOH . F 5 HOH A 126 426 174 HOH HOH . F 5 HOH A 127 427 175 HOH HOH . F 5 HOH A 128 428 176 HOH HOH . F 5 HOH A 129 429 177 HOH HOH . F 5 HOH A 130 430 178 HOH HOH . F 5 HOH A 131 431 179 HOH HOH . F 5 HOH A 132 432 180 HOH HOH . F 5 HOH A 133 433 181 HOH HOH . F 5 HOH A 134 434 185 HOH HOH . F 5 HOH A 135 435 186 HOH HOH . F 5 HOH A 136 436 187 HOH HOH . F 5 HOH A 137 437 188 HOH HOH . F 5 HOH A 138 438 189 HOH HOH . F 5 HOH A 139 439 190 HOH HOH . F 5 HOH A 140 440 199 HOH HOH . F 5 HOH A 141 441 200 HOH HOH . F 5 HOH A 142 442 201 HOH HOH . F 5 HOH A 143 443 202 HOH HOH . F 5 HOH A 144 444 203 HOH HOH . F 5 HOH A 145 445 205 HOH HOH . F 5 HOH A 146 446 206 HOH HOH . F 5 HOH A 147 447 208 HOH HOH . F 5 HOH A 148 448 211 HOH HOH . F 5 HOH A 149 449 213 HOH HOH . F 5 HOH A 150 450 214 HOH HOH . F 5 HOH A 151 451 217 HOH HOH . F 5 HOH A 152 452 220 HOH HOH . F 5 HOH A 153 453 221 HOH HOH . F 5 HOH A 154 454 222 HOH HOH . F 5 HOH A 155 455 223 HOH HOH . F 5 HOH A 156 456 224 HOH HOH . F 5 HOH A 157 457 225 HOH HOH . F 5 HOH A 158 458 300 HOH 1CU . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 3 25.531 17.376 46.626 1 67.51 ? S SO4 302 B 1 HETATM 2 O O1 SO4 . . . C 3 24.873 17.066 47.907 1 69.74 ? O1 SO4 302 B 1 HETATM 3 O O2 SO4 . . . C 3 24.769 16.758 45.531 1 67.68 ? O2 SO4 302 B 1 HETATM 4 O O3 SO4 . . . C 3 26.908 16.851 46.644 1 67.83 ? O3 SO4 302 B 1 HETATM 5 O O4 SO4 . . . C 3 25.564 18.839 46.425 1 69.68 ? O4 SO4 302 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #