data_1ZM8 # _model_server_result.job_id aoD2fpSRf_J00gngur2D1A _model_server_result.datetime_utc '2025-03-25 21:38:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":276}' # _entry.id 1ZM8 # _exptl.entry_id 1ZM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZM8 _cell.length_a 46.69 _cell.length_b 66.682 _cell.length_c 81.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 121 A GLU 136 3_645 C MN MN . A MN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc2 A OE2 GLU 121 A GLU 136 3_645 C MN MN . A MN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 A OE1 GLU 121 A GLU 136 3_645 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A OD2 ASP 138 A ASP 153 1_555 G NA NA . A NA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 A OD1 ASN 140 A ASN 155 1_555 B MN MN . A MN 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc6 A O LEU 219 A LEU 234 1_555 G NA NA . A NA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 A OD1 ASN 221 A ASN 236 1_555 G NA NA . A NA 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 A OD1 ASP 231 A ASP 246 1_555 C MN MN . A MN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 A OE1 GLU 234 A GLU 249 1_555 C MN MN . A MN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc10 A OE2 GLU 234 A GLU 249 1_555 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc11 A OD1 ASP 240 A ASP 255 1_555 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc12 A O PHE 241 A PHE 256 1_555 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc13 A OE1 GLN 250 A GLN 265 1_555 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc14 A OE1 GLU 254 A GLU 269 1_555 C MN MN . A MN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc15 A OE1 GLU 254 A GLU 269 1_555 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc16 A OE2 GLU 254 A GLU 269 1_555 D MN MN . A MN 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc17 B MN MN . A MN 275 1_555 E O4 SO4 . A SO4 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc18 B MN MN . A MN 275 1_555 H O HOH . A HOH 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc19 B MN MN . A MN 275 1_555 H O HOH . A HOH 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc20 B MN MN . A MN 275 1_555 H O HOH . A HOH 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc21 B MN MN . A MN 275 1_555 H O HOH . A HOH 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc22 C MN MN . A MN 276 1_555 H O HOH . A HOH 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZM8 _atom_sites.fract_transf_matrix[1][1] 0.021418 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014997 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 275 1 MN MN . C 2 MN A 1 276 2 MN MN . D 2 MN A 1 277 3 MN MN . E 3 SO4 A 1 278 4 SO4 SO4 . F 3 SO4 A 1 279 5 SO4 SO4 . G 4 NA A 1 280 6 NA NA . H 5 HOH A 1 281 1 HOH TIP . H 5 HOH A 2 282 2 HOH TIP . H 5 HOH A 3 283 3 HOH TIP . H 5 HOH A 4 284 4 HOH TIP . H 5 HOH A 5 285 5 HOH TIP . H 5 HOH A 6 286 6 HOH TIP . H 5 HOH A 7 287 7 HOH TIP . H 5 HOH A 8 288 8 HOH TIP . H 5 HOH A 9 289 9 HOH TIP . H 5 HOH A 10 290 10 HOH TIP . H 5 HOH A 11 291 11 HOH TIP . H 5 HOH A 12 292 12 HOH TIP . H 5 HOH A 13 293 13 HOH TIP . H 5 HOH A 14 294 14 HOH TIP . H 5 HOH A 15 295 15 HOH TIP . H 5 HOH A 16 296 16 HOH TIP . H 5 HOH A 17 297 17 HOH TIP . H 5 HOH A 18 298 18 HOH TIP . H 5 HOH A 19 299 19 HOH TIP . H 5 HOH A 20 300 20 HOH TIP . H 5 HOH A 21 301 21 HOH TIP . H 5 HOH A 22 302 22 HOH TIP . H 5 HOH A 23 303 23 HOH TIP . H 5 HOH A 24 304 24 HOH TIP . H 5 HOH A 25 305 25 HOH TIP . H 5 HOH A 26 306 26 HOH TIP . H 5 HOH A 27 307 27 HOH TIP . H 5 HOH A 28 308 28 HOH TIP . H 5 HOH A 29 309 29 HOH TIP . H 5 HOH A 30 310 30 HOH TIP . H 5 HOH A 31 311 31 HOH TIP . H 5 HOH A 32 312 32 HOH TIP . H 5 HOH A 33 313 33 HOH TIP . H 5 HOH A 34 314 34 HOH TIP . H 5 HOH A 35 315 35 HOH TIP . H 5 HOH A 36 316 36 HOH TIP . H 5 HOH A 37 317 37 HOH TIP . H 5 HOH A 38 318 38 HOH TIP . H 5 HOH A 39 319 39 HOH TIP . H 5 HOH A 40 320 40 HOH TIP . H 5 HOH A 41 321 41 HOH TIP . H 5 HOH A 42 322 42 HOH TIP . H 5 HOH A 43 323 43 HOH TIP . H 5 HOH A 44 324 44 HOH TIP . H 5 HOH A 45 325 45 HOH TIP . H 5 HOH A 46 326 46 HOH TIP . H 5 HOH A 47 327 47 HOH TIP . H 5 HOH A 48 328 48 HOH TIP . H 5 HOH A 49 329 49 HOH TIP . H 5 HOH A 50 330 50 HOH TIP . H 5 HOH A 51 331 51 HOH TIP . H 5 HOH A 52 332 52 HOH TIP . H 5 HOH A 53 333 53 HOH TIP . H 5 HOH A 54 334 54 HOH TIP . H 5 HOH A 55 335 55 HOH TIP . H 5 HOH A 56 336 56 HOH TIP . H 5 HOH A 57 337 57 HOH TIP . H 5 HOH A 58 338 58 HOH TIP . H 5 HOH A 59 339 59 HOH TIP . H 5 HOH A 60 340 60 HOH TIP . H 5 HOH A 61 341 61 HOH TIP . H 5 HOH A 62 342 62 HOH TIP . H 5 HOH A 63 343 63 HOH TIP . H 5 HOH A 64 344 64 HOH TIP . H 5 HOH A 65 345 65 HOH TIP . H 5 HOH A 66 346 66 HOH TIP . H 5 HOH A 67 347 67 HOH TIP . H 5 HOH A 68 348 68 HOH TIP . H 5 HOH A 69 349 69 HOH TIP . H 5 HOH A 70 350 70 HOH TIP . H 5 HOH A 71 351 71 HOH TIP . H 5 HOH A 72 352 72 HOH TIP . H 5 HOH A 73 353 73 HOH TIP . H 5 HOH A 74 354 74 HOH TIP . H 5 HOH A 75 355 75 HOH TIP . H 5 HOH A 76 356 76 HOH TIP . H 5 HOH A 77 357 77 HOH TIP . H 5 HOH A 78 358 78 HOH TIP . H 5 HOH A 79 359 79 HOH TIP . H 5 HOH A 80 360 80 HOH TIP . H 5 HOH A 81 361 81 HOH TIP . H 5 HOH A 82 362 82 HOH TIP . H 5 HOH A 83 363 83 HOH TIP . H 5 HOH A 84 364 84 HOH TIP . H 5 HOH A 85 365 85 HOH TIP . H 5 HOH A 86 366 86 HOH TIP . H 5 HOH A 87 367 87 HOH TIP . H 5 HOH A 88 368 88 HOH TIP . H 5 HOH A 89 369 89 HOH TIP . H 5 HOH A 90 370 90 HOH TIP . H 5 HOH A 91 371 91 HOH TIP . H 5 HOH A 92 372 92 HOH TIP . H 5 HOH A 93 373 93 HOH TIP . H 5 HOH A 94 374 94 HOH TIP . H 5 HOH A 95 375 95 HOH TIP . H 5 HOH A 96 376 96 HOH TIP . H 5 HOH A 97 377 97 HOH TIP . H 5 HOH A 98 378 98 HOH TIP . H 5 HOH A 99 379 99 HOH TIP . H 5 HOH A 100 380 100 HOH TIP . H 5 HOH A 101 381 101 HOH TIP . H 5 HOH A 102 382 102 HOH TIP . H 5 HOH A 103 383 103 HOH TIP . H 5 HOH A 104 384 104 HOH TIP . H 5 HOH A 105 385 105 HOH TIP . H 5 HOH A 106 386 106 HOH TIP . H 5 HOH A 107 387 107 HOH TIP . H 5 HOH A 108 388 108 HOH TIP . H 5 HOH A 109 389 109 HOH TIP . H 5 HOH A 110 390 110 HOH TIP . H 5 HOH A 111 391 111 HOH TIP . H 5 HOH A 112 392 112 HOH TIP . H 5 HOH A 113 393 113 HOH TIP . H 5 HOH A 114 394 114 HOH TIP . H 5 HOH A 115 395 115 HOH TIP . H 5 HOH A 116 396 116 HOH TIP . H 5 HOH A 117 397 117 HOH TIP . H 5 HOH A 118 398 118 HOH TIP . H 5 HOH A 119 399 119 HOH TIP . H 5 HOH A 120 400 120 HOH TIP . H 5 HOH A 121 401 121 HOH TIP . H 5 HOH A 122 402 122 HOH TIP . H 5 HOH A 123 403 123 HOH TIP . H 5 HOH A 124 404 124 HOH TIP . H 5 HOH A 125 405 125 HOH TIP . H 5 HOH A 126 406 126 HOH TIP . H 5 HOH A 127 407 127 HOH TIP . H 5 HOH A 128 408 128 HOH TIP . H 5 HOH A 129 409 129 HOH TIP . H 5 HOH A 130 410 130 HOH TIP . H 5 HOH A 131 411 131 HOH TIP . H 5 HOH A 132 412 132 HOH TIP . H 5 HOH A 133 413 133 HOH TIP . H 5 HOH A 134 414 134 HOH TIP . H 5 HOH A 135 415 135 HOH TIP . H 5 HOH A 136 416 136 HOH TIP . H 5 HOH A 137 417 137 HOH TIP . H 5 HOH A 138 418 138 HOH TIP . H 5 HOH A 139 419 139 HOH TIP . H 5 HOH A 140 420 140 HOH TIP . H 5 HOH A 141 421 141 HOH TIP . H 5 HOH A 142 422 142 HOH TIP . H 5 HOH A 143 423 143 HOH TIP . H 5 HOH A 144 424 144 HOH TIP . H 5 HOH A 145 425 145 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.041 _atom_site.Cartn_y 16.701 _atom_site.Cartn_z 26.533 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 276 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 974 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #