data_1ZM9 # _model_server_result.job_id YBxE3J4LBcRCiJPMLOwkSw _model_server_result.datetime_utc '2024-10-12 23:22:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":700}' # _entry.id 1ZM9 # _exptl.entry_id 1ZM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 295.336 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.5 _cell.angle_gamma 90 _cell.entry_id 1ZM9 _cell.length_a 330.84 _cell.length_b 68.74 _cell.length_c 191.46 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G 1 1 C,D,H 2 1 E,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 698 A ILE 698 1_555 A N DDE 699 A DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C DDE 699 A DDE 699 1_555 A N ARG 700 A ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C ILE 698 C ILE 698 1_555 C N DDE 699 C DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 C C DDE 699 C DDE 699 1_555 C N ARG 700 C ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 E C ILE 698 E ILE 698 1_555 E N DDE 699 E DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 E C DDE 699 E DDE 699 1_555 E N ARG 700 E ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C17 H17 N3 O2' _chem_comp.formula_weight 295.336 _chem_comp.id P34 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA N P34 sing 280 n n CAA HAA1 P34 sing 281 n n CAA HAA2 P34 sing 282 n n CAA HAA3 P34 sing 283 n n N CAB P34 sing 284 n n N CA P34 sing 285 n n CAB HAB1 P34 sing 286 n n CAB HAB2 P34 sing 287 n n CAB HAB3 P34 sing 288 n n CA C P34 sing 289 n n CA HA1 P34 sing 290 n n CA HA2 P34 sing 291 n n C O P34 doub 292 n n C NAM P34 sing 293 n n NAM CAP P34 sing 294 n n NAM HAM P34 sing 295 n n CAP CAK P34 sing 296 n y CAP CAG P34 doub 297 n y CAK CAU P34 doub 298 n y CAK HAK P34 sing 299 n n CAU CAT P34 sing 300 n y CAU CAR P34 sing 301 n y CAT CAI P34 sing 302 n y CAT CAS P34 doub 303 n y CAI CAF P34 doub 304 n y CAI HAI P34 sing 305 n n CAF CAE P34 sing 306 n y CAF HAF P34 sing 307 n n CAE CAH P34 doub 308 n y CAE HAE P34 sing 309 n n CAH CAS P34 sing 310 n y CAH HAH P34 sing 311 n n CAS CAQ P34 sing 312 n y CAQ OAD P34 doub 313 n n CAQ NAN P34 sing 314 n y NAN CAR P34 sing 315 n y NAN HAN P34 sing 316 n n CAR CAJ P34 doub 317 n y CAJ CAG P34 sing 318 n y CAJ HAJ P34 sing 319 n n CAG HAG P34 sing 320 n n # _atom_sites.entry_id 1ZM9 _atom_sites.fract_transf_matrix[1][1] 0.003023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 P34 B 1 700 701 P34 DRG . H 3 P34 D 1 701 701 P34 DRG . I 3 P34 F 1 702 701 P34 DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA P34 . . . G 3 1.684 -4.199 93.722 1 35.61 ? CAA P34 700 B 1 HETATM 2 N N P34 . . . G 3 1.162 -5.555 93.522 1 34.95 ? N P34 700 B 1 HETATM 3 C CAB P34 . . . G 3 0.237 -5.952 94.606 1 34.01 ? CAB P34 700 B 1 HETATM 4 C CA P34 . . . G 3 2.332 -6.492 93.35 1 31.76 ? CA P34 700 B 1 HETATM 5 C C P34 . . . G 3 2.77 -7.604 94.362 1 31.57 ? C P34 700 B 1 HETATM 6 O O P34 . . . G 3 2.155 -7.792 95.411 1 34.19 ? O P34 700 B 1 HETATM 7 N NAM P34 . . . G 3 3.836 -8.42 94.14 1 25.49 ? NAM P34 700 B 1 HETATM 8 C CAP P34 . . . G 3 4.776 -8.612 93.179 1 17.12 ? CAP P34 700 B 1 HETATM 9 C CAK P34 . . . G 3 5.634 -9.693 93.524 1 13.19 ? CAK P34 700 B 1 HETATM 10 C CAU P34 . . . G 3 6.71 -10.115 92.656 1 10.92 ? CAU P34 700 B 1 HETATM 11 C CAT P34 . . . G 3 7.585 -11.209 92.973 1 8.2 ? CAT P34 700 B 1 HETATM 12 C CAI P34 . . . G 3 7.413 -11.991 94.163 1 8.36 ? CAI P34 700 B 1 HETATM 13 C CAF P34 . . . G 3 8.277 -13.079 94.443 1 9.81 ? CAF P34 700 B 1 HETATM 14 C CAE P34 . . . G 3 9.337 -13.394 93.553 1 11.45 ? CAE P34 700 B 1 HETATM 15 C CAH P34 . . . G 3 9.543 -12.647 92.357 1 11.94 ? CAH P34 700 B 1 HETATM 16 C CAS P34 . . . G 3 8.675 -11.545 92.065 1 8 ? CAS P34 700 B 1 HETATM 17 C CAQ P34 . . . G 3 8.855 -10.794 90.877 1 11.55 ? CAQ P34 700 B 1 HETATM 18 O OAD P34 . . . G 3 9.752 -11.02 90.069 1 14.41 ? OAD P34 700 B 1 HETATM 19 N NAN P34 . . . G 3 7.991 -9.713 90.576 1 13.73 ? NAN P34 700 B 1 HETATM 20 C CAR P34 . . . G 3 6.937 -9.341 91.445 1 12.23 ? CAR P34 700 B 1 HETATM 21 C CAJ P34 . . . G 3 6.091 -8.246 91.055 1 12.62 ? CAJ P34 700 B 1 HETATM 22 C CAG P34 . . . G 3 5.027 -7.883 91.945 1 14.2 ? CAG P34 700 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #