data_1ZM9
#
_model_server_result.job_id            Bg-EiYgpmTDDW_3YtQ3WjA 
_model_server_result.datetime_utc      '2024-10-12 23:27:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zm9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":701}' 
#
_entry.id    1ZM9 
#
_exptl.entry_id    1ZM9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              295.336 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.5 
_cell.angle_gamma         90 
_cell.entry_id            1ZM9 
_cell.length_a            330.84 
_cell.length_b            68.74 
_cell.length_c            191.46 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZM9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G 1 1 
C,D,H 2 1 
E,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 698 A ILE 698 1_555 A N DDE 699 A DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A C DDE 699 A DDE 699 1_555 A N ARG 700 A ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 C C ILE 698 C ILE 698 1_555 C N DDE 699 C DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 C C DDE 699 C DDE 699 1_555 C N ARG 700 C ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 E C ILE 698 E ILE 698 1_555 E N DDE 699 E DDE 699 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 E C DDE 699 E DDE 699 1_555 E N ARG 700 E ARG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C17 H17 N3 O2' 
_chem_comp.formula_weight    295.336 
_chem_comp.id                P34 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA N P34 sing 280 n n 
CAA HAA1 P34 sing 281 n n 
CAA HAA2 P34 sing 282 n n 
CAA HAA3 P34 sing 283 n n 
N CAB P34 sing 284 n n 
N CA P34 sing 285 n n 
CAB HAB1 P34 sing 286 n n 
CAB HAB2 P34 sing 287 n n 
CAB HAB3 P34 sing 288 n n 
CA C P34 sing 289 n n 
CA HA1 P34 sing 290 n n 
CA HA2 P34 sing 291 n n 
C O P34 doub 292 n n 
C NAM P34 sing 293 n n 
NAM CAP P34 sing 294 n n 
NAM HAM P34 sing 295 n n 
CAP CAK P34 sing 296 n y 
CAP CAG P34 doub 297 n y 
CAK CAU P34 doub 298 n y 
CAK HAK P34 sing 299 n n 
CAU CAT P34 sing 300 n y 
CAU CAR P34 sing 301 n y 
CAT CAI P34 sing 302 n y 
CAT CAS P34 doub 303 n y 
CAI CAF P34 doub 304 n y 
CAI HAI P34 sing 305 n n 
CAF CAE P34 sing 306 n y 
CAF HAF P34 sing 307 n n 
CAE CAH P34 doub 308 n y 
CAE HAE P34 sing 309 n n 
CAH CAS P34 sing 310 n y 
CAH HAH P34 sing 311 n n 
CAS CAQ P34 sing 312 n y 
CAQ OAD P34 doub 313 n n 
CAQ NAN P34 sing 314 n y 
NAN CAR P34 sing 315 n y 
NAN HAN P34 sing 316 n n 
CAR CAJ P34 doub 317 n y 
CAJ CAG P34 sing 318 n y 
CAJ HAJ P34 sing 319 n n 
CAG HAG P34 sing 320 n n 
#
_atom_sites.entry_id                     1ZM9 
_atom_sites.fract_transf_matrix[1][1]    0.003023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000726 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014548 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 P34 B 1 700 701 P34 DRG . 
H 3 P34 D 1 701 701 P34 DRG . 
I 3 P34 F 1 702 701 P34 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA P34 . . . H 3 54.667 30.433 91.36 1 54.5 ? CAA P34 701 D 1 
HETATM 2 N N P34 . . . H 3 55.25 30.017 92.634 1 54.58 ? N P34 701 D 1 
HETATM 3 C CAB P34 . . . H 3 55.546 31.126 93.515 1 55.84 ? CAB P34 701 D 1 
HETATM 4 C CA P34 . . . H 3 56.468 29.202 92.407 1 51.3 ? CA P34 701 D 1 
HETATM 5 C C P34 . . . H 3 56.949 28.153 93.453 1 47.78 ? C P34 701 D 1 
HETATM 6 O O P34 . . . H 3 56.328 27.992 94.502 1 49.47 ? O P34 701 D 1 
HETATM 7 N NAM P34 . . . H 3 58.02 27.344 93.254 1 41.92 ? NAM P34 701 D 1 
HETATM 8 C CAP P34 . . . H 3 58.956 27.156 92.303 1 32.75 ? CAP P34 701 D 1 
HETATM 9 C CAK P34 . . . H 3 59.8 26.053 92.61 1 27.57 ? CAK P34 701 D 1 
HETATM 10 C CAU P34 . . . H 3 60.841 25.636 91.72 1 22.53 ? CAU P34 701 D 1 
HETATM 11 C CAT P34 . . . H 3 61.681 24.52 91.977 1 20.26 ? CAT P34 701 D 1 
HETATM 12 C CAI P34 . . . H 3 61.538 23.712 93.156 1 19.56 ? CAI P34 701 D 1 
HETATM 13 C CAF P34 . . . H 3 62.383 22.588 93.377 1 18.65 ? CAF P34 701 D 1 
HETATM 14 C CAE P34 . . . H 3 63.391 22.259 92.435 1 20.04 ? CAE P34 701 D 1 
HETATM 15 C CAH P34 . . . H 3 63.571 23.034 91.252 1 20.31 ? CAH P34 701 D 1 
HETATM 16 C CAS P34 . . . H 3 62.726 24.175 91.017 1 19.67 ? CAS P34 701 D 1 
HETATM 17 C CAQ P34 . . . H 3 62.884 24.949 89.833 1 21.64 ? CAQ P34 701 D 1 
HETATM 18 O OAD P34 . . . H 3 63.736 24.724 88.98 1 22.39 ? OAD P34 701 D 1 
HETATM 19 N NAN P34 . . . H 3 62.037 26.052 89.594 1 24.97 ? NAN P34 701 D 1 
HETATM 20 C CAR P34 . . . H 3 61.024 26.407 90.51 1 24.03 ? CAR P34 701 D 1 
HETATM 21 C CAJ P34 . . . H 3 60.201 27.519 90.166 1 25.12 ? CAJ P34 701 D 1 
HETATM 22 C CAG P34 . . . H 3 59.177 27.874 91.074 1 28.3 ? CAG P34 701 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#