data_1ZMH # _model_server_result.job_id aKuOqwihebkc9Pl_z9H4Hw _model_server_result.datetime_utc '2024-12-22 06:20:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":302}' # _entry.id 1ZMH # _exptl.entry_id 1ZMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.79 _cell.angle_gamma 90 _cell.entry_id 1ZMH _cell.length_a 42.038 _cell.length_b 26.051 _cell.length_c 61.587 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 A,B,E,F,G,K,L 3 1,2 C,D,H,I,J,M,N 4 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 42.038 0 0 3 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 67.31742 0 59.263045 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 1 1_555 A SG CYS 29 A CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 3 A CYS 3 1_555 A SG CYS 18 A CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 8 A CYS 8 1_555 A SG CYS 28 A CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf4 B SG CYS 1 B CYS 1 1_555 B SG CYS 29 B CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf5 B SG CYS 3 B CYS 3 1_555 B SG CYS 18 B CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf6 B SG CYS 8 B CYS 8 1_555 B SG CYS 28 B CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 C SG CYS 1 C CYS 1 1_555 C SG CYS 29 C CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf8 C SG CYS 3 C CYS 3 1_555 C SG CYS 18 C CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 C SG CYS 8 C CYS 8 1_555 C SG CYS 28 C CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf10 D SG CYS 1 D CYS 1 1_555 D SG CYS 29 D CYS 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf11 D SG CYS 3 D CYS 3 1_555 D SG CYS 18 D CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf12 D SG CYS 8 D CYS 8 1_555 D SG CYS 28 D CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? covale ? covale1 A C TYR 15 A TYR 15 1_555 A N DAL 16 A DAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C DAL 16 A DAL 16 1_555 A N THR 17 A THR 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 B C TYR 15 B TYR 15 1_555 B N DAL 16 B DAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 B C DAL 16 B DAL 16 1_555 B N THR 17 B THR 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 C C TYR 15 C TYR 15 1_555 C N DAL 16 C DAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 C C DAL 16 C DAL 16 1_555 C N THR 17 C THR 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 D C TYR 15 D TYR 15 1_555 D N DAL 16 D DAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 D C DAL 16 D DAL 16 1_555 D N THR 17 D THR 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 110 n n C1 C2 GOL sing 111 n n C1 H11 GOL sing 112 n n C1 H12 GOL sing 113 n n O1 HO1 GOL sing 114 n n C2 O2 GOL sing 115 n n C2 C3 GOL sing 116 n n C2 H2 GOL sing 117 n n O2 HO2 GOL sing 118 n n C3 O3 GOL sing 119 n n C3 H31 GOL sing 120 n n C3 H32 GOL sing 121 n n O3 HO3 GOL sing 122 n n # _atom_sites.entry_id 1ZMH _atom_sites.fract_transf_matrix[1][1] 0.023788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006727 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.038386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 B 1 403 403 SO4 SO4 . F 3 P6G B 1 201 201 P6G P6G . G 4 GOL B 1 301 301 GOL GOL . H 2 SO4 C 1 401 401 SO4 SO4 . I 2 SO4 C 1 402 402 SO4 SO4 . J 4 GOL D 1 302 302 GOL GOL . K 5 HOH A 1 30 10 HOH HOH . K 5 HOH A 2 31 12 HOH HOH . K 5 HOH A 3 32 18 HOH HOH . K 5 HOH A 4 33 22 HOH HOH . K 5 HOH A 5 34 30 HOH HOH . K 5 HOH A 6 35 31 HOH HOH . K 5 HOH A 7 36 33 HOH HOH . K 5 HOH A 8 37 34 HOH HOH . K 5 HOH A 9 38 37 HOH HOH . K 5 HOH A 10 39 41 HOH HOH . K 5 HOH A 11 40 43 HOH HOH . K 5 HOH A 12 41 44 HOH HOH . K 5 HOH A 13 42 45 HOH HOH . K 5 HOH A 14 43 46 HOH HOH . K 5 HOH A 15 44 47 HOH HOH . K 5 HOH A 16 45 48 HOH HOH . K 5 HOH A 17 46 50 HOH HOH . K 5 HOH A 18 47 51 HOH HOH . K 5 HOH A 19 48 53 HOH HOH . K 5 HOH A 20 49 89 HOH HOH . K 5 HOH A 21 50 90 HOH HOH . K 5 HOH A 22 51 92 HOH HOH . K 5 HOH A 23 52 93 HOH HOH . K 5 HOH A 24 53 94 HOH HOH . L 5 HOH B 1 404 4 HOH HOH . L 5 HOH B 2 405 5 HOH HOH . L 5 HOH B 3 406 6 HOH HOH . L 5 HOH B 4 407 7 HOH HOH . L 5 HOH B 5 408 13 HOH HOH . L 5 HOH B 6 409 15 HOH HOH . L 5 HOH B 7 410 17 HOH HOH . L 5 HOH B 8 411 24 HOH HOH . L 5 HOH B 9 412 26 HOH HOH . L 5 HOH B 10 413 32 HOH HOH . L 5 HOH B 11 414 39 HOH HOH . L 5 HOH B 12 415 40 HOH HOH . L 5 HOH B 13 416 42 HOH HOH . L 5 HOH B 14 417 49 HOH HOH . L 5 HOH B 15 418 52 HOH HOH . L 5 HOH B 16 419 54 HOH HOH . L 5 HOH B 17 420 55 HOH HOH . L 5 HOH B 18 421 56 HOH HOH . L 5 HOH B 19 422 57 HOH HOH . L 5 HOH B 20 423 58 HOH HOH . L 5 HOH B 21 424 59 HOH HOH . L 5 HOH B 22 425 60 HOH HOH . L 5 HOH B 23 426 91 HOH HOH . L 5 HOH B 24 427 95 HOH HOH . L 5 HOH B 25 428 96 HOH HOH . L 5 HOH B 26 429 97 HOH HOH . L 5 HOH B 27 430 98 HOH HOH . L 5 HOH B 28 431 99 HOH HOH . L 5 HOH B 29 432 100 HOH HOH . L 5 HOH B 30 433 101 HOH HOH . L 5 HOH B 31 434 102 HOH HOH . M 5 HOH C 1 403 2 HOH HOH . M 5 HOH C 2 404 8 HOH HOH . M 5 HOH C 3 405 14 HOH HOH . M 5 HOH C 4 406 16 HOH HOH . M 5 HOH C 5 407 23 HOH HOH . M 5 HOH C 6 408 27 HOH HOH . M 5 HOH C 7 409 28 HOH HOH . M 5 HOH C 8 410 29 HOH HOH . M 5 HOH C 9 411 35 HOH HOH . M 5 HOH C 10 412 36 HOH HOH . M 5 HOH C 11 413 61 HOH HOH . M 5 HOH C 12 414 62 HOH HOH . M 5 HOH C 13 415 64 HOH HOH . M 5 HOH C 14 416 65 HOH HOH . M 5 HOH C 15 417 66 HOH HOH . M 5 HOH C 16 418 67 HOH HOH . M 5 HOH C 17 419 68 HOH HOH . M 5 HOH C 18 420 69 HOH HOH . M 5 HOH C 19 421 70 HOH HOH . M 5 HOH C 20 422 71 HOH HOH . M 5 HOH C 21 423 72 HOH HOH . M 5 HOH C 22 424 73 HOH HOH . M 5 HOH C 23 425 74 HOH HOH . M 5 HOH C 24 426 75 HOH HOH . M 5 HOH C 25 427 78 HOH HOH . M 5 HOH C 26 428 79 HOH HOH . M 5 HOH C 27 429 80 HOH HOH . M 5 HOH C 28 430 81 HOH HOH . M 5 HOH C 29 431 82 HOH HOH . M 5 HOH C 30 432 104 HOH HOH . M 5 HOH C 31 433 106 HOH HOH . M 5 HOH C 32 434 107 HOH HOH . M 5 HOH C 33 435 108 HOH HOH . M 5 HOH C 34 436 109 HOH HOH . N 5 HOH D 1 303 1 HOH HOH . N 5 HOH D 2 304 3 HOH HOH . N 5 HOH D 3 305 9 HOH HOH . N 5 HOH D 4 306 11 HOH HOH . N 5 HOH D 5 307 19 HOH HOH . N 5 HOH D 6 308 20 HOH HOH . N 5 HOH D 7 309 21 HOH HOH . N 5 HOH D 8 310 25 HOH HOH . N 5 HOH D 9 311 38 HOH HOH . N 5 HOH D 10 312 63 HOH HOH . N 5 HOH D 11 313 76 HOH HOH . N 5 HOH D 12 314 77 HOH HOH . N 5 HOH D 13 315 83 HOH HOH . N 5 HOH D 14 316 84 HOH HOH . N 5 HOH D 15 317 85 HOH HOH . N 5 HOH D 16 318 86 HOH HOH . N 5 HOH D 17 319 87 HOH HOH . N 5 HOH D 18 320 88 HOH HOH . N 5 HOH D 19 321 103 HOH HOH . N 5 HOH D 20 322 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 4 20.056 30.556 30.922 1 63.85 ? C1 GOL 302 D 1 HETATM 2 O O1 GOL . . . J 4 20.954 31.641 31.008 1 63.87 ? O1 GOL 302 D 1 HETATM 3 C C2 GOL . . . J 4 18.795 31.046 30.234 1 64.33 ? C2 GOL 302 D 1 HETATM 4 O O2 GOL . . . J 4 17.8 31.331 31.199 1 65.06 ? O2 GOL 302 D 1 HETATM 5 C C3 GOL . . . J 4 18.255 30.011 29.261 1 64.5 ? C3 GOL 302 D 1 HETATM 6 O O3 GOL . . . J 4 16.917 30.362 28.959 1 64.74 ? O3 GOL 302 D 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #