data_1ZML # _model_server_result.job_id R72neT9btq9g3fxLJXXLsA _model_server_result.datetime_utc '2024-10-11 19:16:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1004}' # _entry.id 1ZML # _exptl.entry_id 1ZML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZML _cell.length_a 121.291 _cell.length_b 121.291 _cell.length_c 121.291 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZML _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A OG SER 188 A SER 195 1_555 I B 412 . A 412 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 332 n n S O2 SO4 doub 333 n n S O3 SO4 sing 334 n n S O4 SO4 sing 335 n n # _atom_sites.entry_id 1ZML _atom_sites.fract_transf_matrix[1][1] 0.008245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 2 SO4 SO4 . C 2 SO4 A 1 1003 3 SO4 SO4 . D 2 SO4 A 1 1004 4 SO4 SO4 . E 3 BCT A 1 1005 5 BCT BCT . F 2 SO4 A 1 1006 6 SO4 SO4 . G 2 SO4 A 1 1007 7 SO4 SO4 . H 2 SO4 A 1 1008 8 SO4 SO4 . I 4 412 A 1 1001 1 412 412 . J 5 HOH A 1 1009 1 HOH HOH . J 5 HOH A 2 1010 2 HOH HOH . J 5 HOH A 3 1011 3 HOH HOH . J 5 HOH A 4 1012 4 HOH HOH . J 5 HOH A 5 1013 5 HOH HOH . J 5 HOH A 6 1014 6 HOH HOH . J 5 HOH A 7 1015 7 HOH HOH . J 5 HOH A 8 1016 8 HOH HOH . J 5 HOH A 9 1017 9 HOH HOH . J 5 HOH A 10 1018 10 HOH HOH . J 5 HOH A 11 1019 11 HOH HOH . J 5 HOH A 12 1020 12 HOH HOH . J 5 HOH A 13 1021 13 HOH HOH . J 5 HOH A 14 1022 14 HOH HOH . J 5 HOH A 15 1023 15 HOH HOH . J 5 HOH A 16 1024 16 HOH HOH . J 5 HOH A 17 1025 17 HOH HOH . J 5 HOH A 18 1026 18 HOH HOH . J 5 HOH A 19 1027 19 HOH HOH . J 5 HOH A 20 1028 20 HOH HOH . J 5 HOH A 21 1029 21 HOH HOH . J 5 HOH A 22 1030 22 HOH HOH . J 5 HOH A 23 1031 23 HOH HOH . J 5 HOH A 24 1032 24 HOH HOH . J 5 HOH A 25 1033 25 HOH HOH . J 5 HOH A 26 1034 26 HOH HOH . J 5 HOH A 27 1035 27 HOH HOH . J 5 HOH A 28 1036 28 HOH HOH . J 5 HOH A 29 1037 29 HOH HOH . J 5 HOH A 30 1038 30 HOH HOH . J 5 HOH A 31 1039 31 HOH HOH . J 5 HOH A 32 1040 32 HOH HOH . J 5 HOH A 33 1041 33 HOH HOH . J 5 HOH A 34 1042 34 HOH HOH . J 5 HOH A 35 1043 35 HOH HOH . J 5 HOH A 36 1044 36 HOH HOH . J 5 HOH A 37 1045 37 HOH HOH . J 5 HOH A 38 1046 38 HOH HOH . J 5 HOH A 39 1047 39 HOH HOH . J 5 HOH A 40 1048 40 HOH HOH . J 5 HOH A 41 1049 41 HOH HOH . J 5 HOH A 42 1050 42 HOH HOH . J 5 HOH A 43 1051 43 HOH HOH . J 5 HOH A 44 1052 44 HOH HOH . J 5 HOH A 45 1053 45 HOH HOH . J 5 HOH A 46 1054 46 HOH HOH . J 5 HOH A 47 1055 47 HOH HOH . J 5 HOH A 48 1056 48 HOH HOH . J 5 HOH A 49 1057 49 HOH HOH . J 5 HOH A 50 1058 50 HOH HOH . J 5 HOH A 51 1059 51 HOH HOH . J 5 HOH A 52 1060 52 HOH HOH . J 5 HOH A 53 1061 53 HOH HOH . J 5 HOH A 54 1062 54 HOH HOH . J 5 HOH A 55 1063 55 HOH HOH . J 5 HOH A 56 1064 56 HOH HOH . J 5 HOH A 57 1065 57 HOH HOH . J 5 HOH A 58 1066 58 HOH HOH . J 5 HOH A 59 1067 59 HOH HOH . J 5 HOH A 60 1068 60 HOH HOH . J 5 HOH A 61 1069 61 HOH HOH . J 5 HOH A 62 1070 62 HOH HOH . J 5 HOH A 63 1071 63 HOH HOH . J 5 HOH A 64 1072 64 HOH HOH . J 5 HOH A 65 1073 65 HOH HOH . J 5 HOH A 66 1074 66 HOH HOH . J 5 HOH A 67 1075 67 HOH HOH . J 5 HOH A 68 1076 68 HOH HOH . J 5 HOH A 69 1077 69 HOH HOH . J 5 HOH A 70 1078 70 HOH HOH . J 5 HOH A 71 1079 71 HOH HOH . J 5 HOH A 72 1080 72 HOH HOH . J 5 HOH A 73 1081 73 HOH HOH . J 5 HOH A 74 1082 74 HOH HOH . J 5 HOH A 75 1083 75 HOH HOH . J 5 HOH A 76 1084 76 HOH HOH . J 5 HOH A 77 1085 77 HOH HOH . J 5 HOH A 78 1086 78 HOH HOH . J 5 HOH A 79 1087 79 HOH HOH . J 5 HOH A 80 1088 80 HOH HOH . J 5 HOH A 81 1089 81 HOH HOH . J 5 HOH A 82 1090 82 HOH HOH . J 5 HOH A 83 1091 83 HOH HOH . J 5 HOH A 84 1092 84 HOH HOH . J 5 HOH A 85 1093 85 HOH HOH . J 5 HOH A 86 1094 86 HOH HOH . J 5 HOH A 87 1095 87 HOH HOH . J 5 HOH A 88 1096 88 HOH HOH . J 5 HOH A 89 1097 89 HOH HOH . J 5 HOH A 90 1098 90 HOH HOH . J 5 HOH A 91 1099 91 HOH HOH . J 5 HOH A 92 1100 92 HOH HOH . J 5 HOH A 93 1101 93 HOH HOH . J 5 HOH A 94 1102 94 HOH HOH . J 5 HOH A 95 1103 95 HOH HOH . J 5 HOH A 96 1104 96 HOH HOH . J 5 HOH A 97 1105 97 HOH HOH . J 5 HOH A 98 1106 98 HOH HOH . J 5 HOH A 99 1107 99 HOH HOH . J 5 HOH A 100 1108 100 HOH HOH . J 5 HOH A 101 1109 101 HOH HOH . J 5 HOH A 102 1110 102 HOH HOH . J 5 HOH A 103 1111 103 HOH HOH . J 5 HOH A 104 1112 104 HOH HOH . J 5 HOH A 105 1113 105 HOH HOH . J 5 HOH A 106 1114 106 HOH HOH . J 5 HOH A 107 1115 107 HOH HOH . J 5 HOH A 108 1116 108 HOH HOH . J 5 HOH A 109 1117 109 HOH HOH . J 5 HOH A 110 1118 110 HOH HOH . J 5 HOH A 111 1119 111 HOH HOH . J 5 HOH A 112 1120 112 HOH HOH . J 5 HOH A 113 1121 113 HOH HOH . J 5 HOH A 114 1122 114 HOH HOH . J 5 HOH A 115 1123 115 HOH HOH . J 5 HOH A 116 1124 116 HOH HOH . J 5 HOH A 117 1125 117 HOH HOH . J 5 HOH A 118 1126 118 HOH HOH . J 5 HOH A 119 1127 119 HOH HOH . J 5 HOH A 120 1128 120 HOH HOH . J 5 HOH A 121 1129 121 HOH HOH . J 5 HOH A 122 1130 122 HOH HOH . J 5 HOH A 123 1131 123 HOH HOH . J 5 HOH A 124 1132 124 HOH HOH . J 5 HOH A 125 1133 125 HOH HOH . J 5 HOH A 126 1134 126 HOH HOH . J 5 HOH A 127 1135 127 HOH HOH . J 5 HOH A 128 1136 128 HOH HOH . J 5 HOH A 129 1137 129 HOH HOH . J 5 HOH A 130 1138 130 HOH HOH . J 5 HOH A 131 1139 131 HOH HOH . J 5 HOH A 132 1140 132 HOH HOH . J 5 HOH A 133 1141 133 HOH HOH . J 5 HOH A 134 1142 134 HOH HOH . J 5 HOH A 135 1143 135 HOH HOH . J 5 HOH A 136 1144 136 HOH HOH . J 5 HOH A 137 1145 137 HOH HOH . J 5 HOH A 138 1146 138 HOH HOH . J 5 HOH A 139 1147 139 HOH HOH . J 5 HOH A 140 1148 140 HOH HOH . J 5 HOH A 141 1149 141 HOH HOH . J 5 HOH A 142 1150 142 HOH HOH . J 5 HOH A 143 1151 143 HOH HOH . J 5 HOH A 144 1152 144 HOH HOH . J 5 HOH A 145 1153 145 HOH HOH . J 5 HOH A 146 1154 146 HOH HOH . J 5 HOH A 147 1155 147 HOH HOH . J 5 HOH A 148 1156 148 HOH HOH . J 5 HOH A 149 1157 149 HOH HOH . J 5 HOH A 150 1158 150 HOH HOH . J 5 HOH A 151 1159 151 HOH HOH . J 5 HOH A 152 1160 152 HOH HOH . J 5 HOH A 153 1161 153 HOH HOH . J 5 HOH A 154 1162 154 HOH HOH . J 5 HOH A 155 1163 155 HOH HOH . J 5 HOH A 156 1164 156 HOH HOH . J 5 HOH A 157 1165 157 HOH HOH . J 5 HOH A 158 1166 158 HOH HOH . J 5 HOH A 159 1167 159 HOH HOH . J 5 HOH A 160 1168 160 HOH HOH . J 5 HOH A 161 1169 161 HOH HOH . J 5 HOH A 162 1170 162 HOH HOH . J 5 HOH A 163 1171 163 HOH HOH . J 5 HOH A 164 1172 164 HOH HOH . J 5 HOH A 165 1173 165 HOH HOH . J 5 HOH A 166 1174 166 HOH HOH . J 5 HOH A 167 1175 167 HOH HOH . J 5 HOH A 168 1176 168 HOH HOH . J 5 HOH A 169 1177 169 HOH HOH . J 5 HOH A 170 1178 170 HOH HOH . J 5 HOH A 171 1179 171 HOH HOH . J 5 HOH A 172 1180 172 HOH HOH . J 5 HOH A 173 1181 173 HOH HOH . J 5 HOH A 174 1182 174 HOH HOH . J 5 HOH A 175 1183 175 HOH HOH . J 5 HOH A 176 1184 176 HOH HOH . J 5 HOH A 177 1185 177 HOH HOH . J 5 HOH A 178 1186 178 HOH HOH . J 5 HOH A 179 1187 179 HOH HOH . J 5 HOH A 180 1188 180 HOH HOH . J 5 HOH A 181 1189 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 19.674 75.895 113.119 1 54.14 ? S SO4 1004 A 1 HETATM 2 O O1 SO4 . . . D 2 20.68 75.25 113.976 1 53.8 ? O1 SO4 1004 A 1 HETATM 3 O O2 SO4 . . . D 2 18.503 76.243 113.938 1 53.77 ? O2 SO4 1004 A 1 HETATM 4 O O3 SO4 . . . D 2 20.226 77.129 112.538 1 53.76 ? O3 SO4 1004 A 1 HETATM 5 O O4 SO4 . . . D 2 19.294 74.955 112.041 1 53.95 ? O4 SO4 1004 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #