data_1ZMN # _model_server_result.job_id arwzOBk4DuaStmqE2vHp8A _model_server_result.datetime_utc '2024-12-17 05:58:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 1ZMN # _exptl.entry_id 1ZMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 235.047 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENYL)GUANIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZMN _cell.length_a 121.332 _cell.length_b 121.332 _cell.length_c 121.332 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A OG SER 188 A SER 195 1_555 E B 427 . A 427 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? # _chem_comp.formula 'C10 H14 B N3 O3' _chem_comp.formula_weight 235.047 _chem_comp.id 427 _chem_comp.mon_nstd_flag . _chem_comp.name (R)-1-(4-(4-(HYDROXYMETHYL)-1,3,2-DIOXABOROLAN-2-YL)PHENYL)GUANIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 427 sing 1 n y C01 C06 427 doub 2 n y C01 N07 427 sing 3 n n C02 C03 427 doub 4 n y C02 H02 427 sing 5 n n C03 C04 427 sing 6 n y C03 H03 427 sing 7 n n C04 C05 427 doub 8 n y C04 B 427 sing 9 n n C05 C06 427 sing 10 n y C05 H05 427 sing 11 n n C06 H06 427 sing 12 n n N07 C08 427 sing 13 n n N07 H07 427 sing 14 n n C08 N16 427 doub 15 n n C08 N17 427 sing 16 n n B O10 427 sing 17 n n B O13 427 sing 18 n n O10 C11 427 sing 19 n n C11 C12 427 sing 20 n n C11 C14 427 sing 21 n n C11 H11 427 sing 22 n n C12 O13 427 sing 23 n n C12 H121 427 sing 24 n n C12 H122 427 sing 25 n n C14 O15 427 sing 26 n n C14 H141 427 sing 27 n n C14 H142 427 sing 28 n n O15 H15 427 sing 29 n n N16 H16 427 sing 30 n n N17 H171 427 sing 31 n n N17 H172 427 sing 32 n n # _atom_sites.entry_id 1ZMN _atom_sites.fract_transf_matrix[1][1] 0.008242 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1002 2 SO4 SO4 . C 2 SO4 A 1 1003 3 SO4 SO4 . D 2 SO4 A 1 1004 4 SO4 SO4 . E 3 427 A 1 1001 1 427 427 . F 4 HOH A 1 1005 1 HOH HOH . F 4 HOH A 2 1006 2 HOH HOH . F 4 HOH A 3 1007 3 HOH HOH . F 4 HOH A 4 1008 4 HOH HOH . F 4 HOH A 5 1009 5 HOH HOH . F 4 HOH A 6 1010 6 HOH HOH . F 4 HOH A 7 1011 7 HOH HOH . F 4 HOH A 8 1012 8 HOH HOH . F 4 HOH A 9 1013 9 HOH HOH . F 4 HOH A 10 1014 10 HOH HOH . F 4 HOH A 11 1015 11 HOH HOH . F 4 HOH A 12 1016 12 HOH HOH . F 4 HOH A 13 1017 13 HOH HOH . F 4 HOH A 14 1018 14 HOH HOH . F 4 HOH A 15 1019 15 HOH HOH . F 4 HOH A 16 1020 16 HOH HOH . F 4 HOH A 17 1021 17 HOH HOH . F 4 HOH A 18 1022 18 HOH HOH . F 4 HOH A 19 1023 19 HOH HOH . F 4 HOH A 20 1024 20 HOH HOH . F 4 HOH A 21 1025 21 HOH HOH . F 4 HOH A 22 1026 22 HOH HOH . F 4 HOH A 23 1027 23 HOH HOH . F 4 HOH A 24 1028 24 HOH HOH . F 4 HOH A 25 1029 25 HOH HOH . F 4 HOH A 26 1030 26 HOH HOH . F 4 HOH A 27 1031 27 HOH HOH . F 4 HOH A 28 1032 28 HOH HOH . F 4 HOH A 29 1033 29 HOH HOH . F 4 HOH A 30 1034 30 HOH HOH . F 4 HOH A 31 1035 31 HOH HOH . F 4 HOH A 32 1036 32 HOH HOH . F 4 HOH A 33 1037 33 HOH HOH . F 4 HOH A 34 1038 34 HOH HOH . F 4 HOH A 35 1039 35 HOH HOH . F 4 HOH A 36 1040 36 HOH HOH . F 4 HOH A 37 1041 37 HOH HOH . F 4 HOH A 38 1042 38 HOH HOH . F 4 HOH A 39 1043 39 HOH HOH . F 4 HOH A 40 1044 40 HOH HOH . F 4 HOH A 41 1045 41 HOH HOH . F 4 HOH A 42 1046 42 HOH HOH . F 4 HOH A 43 1047 43 HOH HOH . F 4 HOH A 44 1048 44 HOH HOH . F 4 HOH A 45 1049 45 HOH HOH . F 4 HOH A 46 1050 46 HOH HOH . F 4 HOH A 47 1051 47 HOH HOH . F 4 HOH A 48 1052 48 HOH HOH . F 4 HOH A 49 1053 49 HOH HOH . F 4 HOH A 50 1054 50 HOH HOH . F 4 HOH A 51 1055 51 HOH HOH . F 4 HOH A 52 1056 52 HOH HOH . F 4 HOH A 53 1057 53 HOH HOH . F 4 HOH A 54 1058 54 HOH HOH . F 4 HOH A 55 1059 55 HOH HOH . F 4 HOH A 56 1060 56 HOH HOH . F 4 HOH A 57 1061 57 HOH HOH . F 4 HOH A 58 1062 58 HOH HOH . F 4 HOH A 59 1063 59 HOH HOH . F 4 HOH A 60 1064 60 HOH HOH . F 4 HOH A 61 1065 61 HOH HOH . F 4 HOH A 62 1066 62 HOH HOH . F 4 HOH A 63 1067 63 HOH HOH . F 4 HOH A 64 1068 64 HOH HOH . F 4 HOH A 65 1069 65 HOH HOH . F 4 HOH A 66 1070 66 HOH HOH . F 4 HOH A 67 1071 67 HOH HOH . F 4 HOH A 68 1072 68 HOH HOH . F 4 HOH A 69 1073 69 HOH HOH . F 4 HOH A 70 1074 70 HOH HOH . F 4 HOH A 71 1075 71 HOH HOH . F 4 HOH A 72 1076 72 HOH HOH . F 4 HOH A 73 1077 73 HOH HOH . F 4 HOH A 74 1078 74 HOH HOH . F 4 HOH A 75 1079 75 HOH HOH . F 4 HOH A 76 1080 76 HOH HOH . F 4 HOH A 77 1081 77 HOH HOH . F 4 HOH A 78 1082 78 HOH HOH . F 4 HOH A 79 1083 79 HOH HOH . F 4 HOH A 80 1084 80 HOH HOH . F 4 HOH A 81 1085 81 HOH HOH . F 4 HOH A 82 1086 82 HOH HOH . F 4 HOH A 83 1087 83 HOH HOH . F 4 HOH A 84 1088 84 HOH HOH . F 4 HOH A 85 1089 85 HOH HOH . F 4 HOH A 86 1090 86 HOH HOH . F 4 HOH A 87 1091 87 HOH HOH . F 4 HOH A 88 1092 88 HOH HOH . F 4 HOH A 89 1093 89 HOH HOH . F 4 HOH A 90 1094 90 HOH HOH . F 4 HOH A 91 1095 91 HOH HOH . F 4 HOH A 92 1096 92 HOH HOH . F 4 HOH A 93 1097 93 HOH HOH . F 4 HOH A 94 1098 94 HOH HOH . F 4 HOH A 95 1099 95 HOH HOH . F 4 HOH A 96 1100 96 HOH HOH . F 4 HOH A 97 1101 97 HOH HOH . F 4 HOH A 98 1102 98 HOH HOH . F 4 HOH A 99 1103 99 HOH HOH . F 4 HOH A 100 1104 100 HOH HOH . F 4 HOH A 101 1105 101 HOH HOH . F 4 HOH A 102 1106 102 HOH HOH . F 4 HOH A 103 1107 103 HOH HOH . F 4 HOH A 104 1108 104 HOH HOH . F 4 HOH A 105 1109 105 HOH HOH . F 4 HOH A 106 1110 106 HOH HOH . F 4 HOH A 107 1111 107 HOH HOH . F 4 HOH A 108 1112 108 HOH HOH . F 4 HOH A 109 1113 109 HOH HOH . F 4 HOH A 110 1114 110 HOH HOH . F 4 HOH A 111 1115 111 HOH HOH . F 4 HOH A 112 1116 112 HOH HOH . F 4 HOH A 113 1117 113 HOH HOH . F 4 HOH A 114 1118 114 HOH HOH . F 4 HOH A 115 1119 115 HOH HOH . F 4 HOH A 116 1120 116 HOH HOH . F 4 HOH A 117 1121 117 HOH HOH . F 4 HOH A 118 1122 118 HOH HOH . F 4 HOH A 119 1123 119 HOH HOH . F 4 HOH A 120 1124 120 HOH HOH . F 4 HOH A 121 1125 121 HOH HOH . F 4 HOH A 122 1126 122 HOH HOH . F 4 HOH A 123 1127 123 HOH HOH . F 4 HOH A 124 1128 124 HOH HOH . F 4 HOH A 125 1129 125 HOH HOH . F 4 HOH A 126 1130 126 HOH HOH . F 4 HOH A 127 1131 127 HOH HOH . F 4 HOH A 128 1132 128 HOH HOH . F 4 HOH A 129 1133 129 HOH HOH . F 4 HOH A 130 1134 130 HOH HOH . F 4 HOH A 131 1135 131 HOH HOH . F 4 HOH A 132 1136 132 HOH HOH . F 4 HOH A 133 1137 133 HOH HOH . F 4 HOH A 134 1138 134 HOH HOH . F 4 HOH A 135 1139 135 HOH HOH . F 4 HOH A 136 1140 136 HOH HOH . F 4 HOH A 137 1141 137 HOH HOH . F 4 HOH A 138 1142 138 HOH HOH . F 4 HOH A 139 1143 139 HOH HOH . F 4 HOH A 140 1144 140 HOH HOH . F 4 HOH A 141 1145 141 HOH HOH . F 4 HOH A 142 1146 142 HOH HOH . F 4 HOH A 143 1147 143 HOH HOH . F 4 HOH A 144 1148 144 HOH HOH . F 4 HOH A 145 1149 145 HOH HOH . F 4 HOH A 146 1150 146 HOH HOH . F 4 HOH A 147 1151 147 HOH HOH . F 4 HOH A 148 1152 148 HOH HOH . F 4 HOH A 149 1153 149 HOH HOH . F 4 HOH A 150 1154 150 HOH HOH . F 4 HOH A 151 1155 151 HOH HOH . F 4 HOH A 152 1156 152 HOH HOH . F 4 HOH A 153 1157 153 HOH HOH . F 4 HOH A 154 1158 154 HOH HOH . F 4 HOH A 155 1159 155 HOH HOH . F 4 HOH A 156 1160 156 HOH HOH . F 4 HOH A 157 1161 157 HOH HOH . F 4 HOH A 158 1162 158 HOH HOH . F 4 HOH A 159 1163 159 HOH HOH . F 4 HOH A 160 1164 160 HOH HOH . F 4 HOH A 161 1165 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 427 . . . E 3 11.717 49.79 21.338 1 28.99 ? C01 427 1001 A 1 HETATM 2 C C02 427 . . . E 3 11.348 51.148 21.65 1 29.36 ? C02 427 1001 A 1 HETATM 3 C C03 427 . . . E 3 11.404 51.64 22.988 1 29.93 ? C03 427 1001 A 1 HETATM 4 C C04 427 . . . E 3 11.829 50.789 24.055 1 28.6 ? C04 427 1001 A 1 HETATM 5 C C05 427 . . . E 3 12.2 49.439 23.746 1 29.02 ? C05 427 1001 A 1 HETATM 6 C C06 427 . . . E 3 12.145 48.946 22.412 1 26.77 ? C06 427 1001 A 1 HETATM 7 N N07 427 . . . E 3 11.645 49.325 20.008 1 28.87 ? N07 427 1001 A 1 HETATM 8 C C08 427 . . . E 3 11.684 50.162 18.846 1 29.39 ? C08 427 1001 A 1 HETATM 9 B B 427 . . . E 3 11.895 51.292 25.494 1 28.54 ? B 427 1001 A 1 HETATM 10 O O10 427 . . . E 3 12.75 52.428 25.618 1 30.34 ? O10 427 1001 A 1 HETATM 11 C C11 427 . . . E 3 12.114 53.394 26.427 1 31.89 ? C11 427 1001 A 1 HETATM 12 C C12 427 . . . E 3 10.884 52.688 26.985 1 30.62 ? C12 427 1001 A 1 HETATM 13 O O13 427 . . . E 3 10.609 51.698 26.001 1 27.36 ? O13 427 1001 A 1 HETATM 14 C C14 427 . . . E 3 13.106 53.878 27.514 1 36.23 ? C14 427 1001 A 1 HETATM 15 O O15 427 . . . E 3 12.451 54.359 28.672 1 44.38 ? O15 427 1001 A 1 HETATM 16 N N16 427 . . . E 3 12.205 51.348 18.789 1 29.99 ? N16 427 1001 A 1 HETATM 17 N N17 427 . . . E 3 11.11 49.633 17.668 1 27.05 ? N17 427 1001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #