data_1ZMP # _model_server_result.job_id 9puWtkL1vs55Ju9amU3wOQ _model_server_result.datetime_utc '2025-01-10 12:44:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 1ZMP # _exptl.entry_id 1ZMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZMP _cell.length_a 49.375 _cell.length_b 49.375 _cell.length_c 255.185 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA octameric 8 software_defined_assembly 5 PISA octameric 8 software_defined_assembly 6 PISA octameric 8 software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,P 1 1 B,G,H,I,J,K,Q 2 1 C,L,M,N,R 3 1 D,O,S 4 1 C,L,M,N,R 5 3,4 D,O,S 5 5,6 A,B,E,F,G,H,I,J,K,P,Q 5 1,2 A,B,E,F,G,H,I,J,K,P,Q 6 1,2 C,D,L,M,N,O,R,S 6 5,6 D,O,S 7 5,6 A,B,C,E,F,G,H,I,J,K,L,M,N,P,Q,R 7 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 42.530833 3 'crystal symmetry operation' 1_445 x-1,y-1,z 1 0 0 0 1 0 0 0 1 -24.6875 -42.760004 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 24.6875 42.760004 42.530833 5 'crystal symmetry operation' 5_455 y-1,-x+y,z+1/6 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -49.375 0 42.530833 6 'crystal symmetry operation' 8_565 x-y,-y+1,-z 1 0 0 0 -1 0 0 0 -1 -24.6875 42.760004 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 5 A CYS 5 1_555 A SG CYS 20 A CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 10 A CYS 10 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 B SG CYS 3 C CYS 3 1_555 B SG CYS 31 C CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf5 B SG CYS 5 C CYS 5 1_555 B SG CYS 20 C CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 B SG CYS 10 C CYS 10 1_555 B SG CYS 30 C CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 3 B CYS 3 1_555 C SG CYS 31 B CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf8 C SG CYS 5 B CYS 5 1_555 C SG CYS 20 B CYS 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf9 C SG CYS 10 B CYS 10 1_555 C SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf10 D SG CYS 3 D CYS 3 1_555 D SG CYS 31 D CYS 31 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.27 ? disulf ? disulf11 D SG CYS 5 D CYS 5 1_555 D SG CYS 20 D CYS 20 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.643 ? disulf ? disulf12 D SG CYS 5 D CYS 5 1_555 D SG CYS 20 D CYS 20 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.829 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 79 n n C1 C2 GOL sing 80 n n C1 H11 GOL sing 81 n n C1 H12 GOL sing 82 n n O1 HO1 GOL sing 83 n n C2 O2 GOL sing 84 n n C2 C3 GOL sing 85 n n C2 H2 GOL sing 86 n n O2 HO2 GOL sing 87 n n C3 O3 GOL sing 88 n n C3 H31 GOL sing 89 n n C3 H32 GOL sing 90 n n O3 HO3 GOL sing 91 n n # _atom_sites.entry_id 1ZMP _atom_sites.fract_transf_matrix[1][1] 0.020253 _atom_sites.fract_transf_matrix[1][2] 0.011693 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003919 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 102 102 SO4 SO4 . F 3 GOL A 1 202 202 GOL GOL . G 2 SO4 C 1 104 104 SO4 SO4 . H 2 SO4 C 1 105 105 SO4 SO4 . I 3 GOL C 1 201 201 GOL GOL . J 3 GOL C 1 203 203 GOL GOL . K 3 GOL C 1 204 204 GOL GOL . L 2 SO4 B 1 101 101 SO4 SO4 . M 2 SO4 B 1 106 106 SO4 SO4 . N 4 CL B 1 151 151 CL CL . O 2 SO4 D 1 103 103 SO4 SO4 . P 5 HOH A 1 501 501 HOH HOH . P 5 HOH A 2 502 502 HOH HOH . P 5 HOH A 3 503 503 HOH HOH . P 5 HOH A 4 504 504 HOH HOH . P 5 HOH A 5 507 507 HOH HOH . P 5 HOH A 6 511 511 HOH HOH . P 5 HOH A 7 512 512 HOH HOH . P 5 HOH A 8 513 513 HOH HOH . P 5 HOH A 9 516 516 HOH HOH . P 5 HOH A 10 517 517 HOH HOH . P 5 HOH A 11 518 518 HOH HOH . P 5 HOH A 12 521 521 HOH HOH . P 5 HOH A 13 522 522 HOH HOH . P 5 HOH A 14 524 524 HOH HOH . P 5 HOH A 15 525 525 HOH HOH . P 5 HOH A 16 527 527 HOH HOH . P 5 HOH A 17 535 535 HOH HOH . P 5 HOH A 18 538 538 HOH HOH . P 5 HOH A 19 546 546 HOH HOH . P 5 HOH A 20 555 555 HOH HOH . P 5 HOH A 21 556 556 HOH HOH . P 5 HOH A 22 558 558 HOH HOH . P 5 HOH A 23 559 559 HOH HOH . P 5 HOH A 24 560 560 HOH HOH . P 5 HOH A 25 561 561 HOH HOH . P 5 HOH A 26 562 562 HOH HOH . P 5 HOH A 27 589 589 HOH HOH . P 5 HOH A 28 602 602 HOH HOH . P 5 HOH A 29 607 607 HOH HOH . P 5 HOH A 30 616 616 HOH HOH . P 5 HOH A 31 617 617 HOH HOH . P 5 HOH A 32 618 618 HOH HOH . P 5 HOH A 33 619 619 HOH HOH . P 5 HOH A 34 620 620 HOH HOH . P 5 HOH A 35 621 621 HOH HOH . P 5 HOH A 36 622 622 HOH HOH . P 5 HOH A 37 623 623 HOH HOH . P 5 HOH A 38 624 624 HOH HOH . P 5 HOH A 39 632 632 HOH HOH . P 5 HOH A 40 633 633 HOH HOH . P 5 HOH A 41 634 634 HOH HOH . P 5 HOH A 42 637 637 HOH HOH . P 5 HOH A 43 638 638 HOH HOH . P 5 HOH A 44 639 639 HOH HOH . P 5 HOH A 45 664 664 HOH HOH . Q 5 HOH C 1 506 506 HOH HOH . Q 5 HOH C 2 508 508 HOH HOH . Q 5 HOH C 3 520 520 HOH HOH . Q 5 HOH C 4 523 523 HOH HOH . Q 5 HOH C 5 526 526 HOH HOH . Q 5 HOH C 6 529 529 HOH HOH . Q 5 HOH C 7 533 533 HOH HOH . Q 5 HOH C 8 540 540 HOH HOH . Q 5 HOH C 9 541 541 HOH HOH . Q 5 HOH C 10 542 542 HOH HOH . Q 5 HOH C 11 543 543 HOH HOH . Q 5 HOH C 12 544 544 HOH HOH . Q 5 HOH C 13 547 547 HOH HOH . Q 5 HOH C 14 548 548 HOH HOH . Q 5 HOH C 15 550 550 HOH HOH . Q 5 HOH C 16 551 551 HOH HOH . Q 5 HOH C 17 552 552 HOH HOH . Q 5 HOH C 18 553 553 HOH HOH . Q 5 HOH C 19 564 564 HOH HOH . Q 5 HOH C 20 572 572 HOH HOH . Q 5 HOH C 21 573 573 HOH HOH . Q 5 HOH C 22 580 580 HOH HOH . Q 5 HOH C 23 582 582 HOH HOH . Q 5 HOH C 24 583 583 HOH HOH . Q 5 HOH C 25 585 585 HOH HOH . Q 5 HOH C 26 590 590 HOH HOH . Q 5 HOH C 27 591 591 HOH HOH . Q 5 HOH C 28 594 594 HOH HOH . Q 5 HOH C 29 596 596 HOH HOH . Q 5 HOH C 30 597 597 HOH HOH . Q 5 HOH C 31 613 613 HOH HOH . Q 5 HOH C 32 614 614 HOH HOH . Q 5 HOH C 33 627 627 HOH HOH . Q 5 HOH C 34 628 628 HOH HOH . Q 5 HOH C 35 642 642 HOH HOH . Q 5 HOH C 36 643 643 HOH HOH . Q 5 HOH C 37 651 651 HOH HOH . Q 5 HOH C 38 661 661 HOH HOH . Q 5 HOH C 39 662 662 HOH HOH . Q 5 HOH C 40 663 663 HOH HOH . Q 5 HOH C 41 665 665 HOH HOH . Q 5 HOH C 42 666 666 HOH HOH . Q 5 HOH C 43 668 668 HOH HOH . Q 5 HOH C 44 669 669 HOH HOH . R 5 HOH B 1 505 505 HOH HOH . R 5 HOH B 2 510 510 HOH HOH . R 5 HOH B 3 515 515 HOH HOH . R 5 HOH B 4 519 519 HOH HOH . R 5 HOH B 5 528 528 HOH HOH . R 5 HOH B 6 530 530 HOH HOH . R 5 HOH B 7 531 531 HOH HOH . R 5 HOH B 8 532 532 HOH HOH . R 5 HOH B 9 534 534 HOH HOH . R 5 HOH B 10 539 539 HOH HOH . R 5 HOH B 11 563 563 HOH HOH . R 5 HOH B 12 565 565 HOH HOH . R 5 HOH B 13 566 566 HOH HOH . R 5 HOH B 14 567 567 HOH HOH . R 5 HOH B 15 568 568 HOH HOH . R 5 HOH B 16 569 569 HOH HOH . R 5 HOH B 17 570 570 HOH HOH . R 5 HOH B 18 571 571 HOH HOH . R 5 HOH B 19 577 577 HOH HOH . R 5 HOH B 20 578 578 HOH HOH . R 5 HOH B 21 579 579 HOH HOH . R 5 HOH B 22 587 587 HOH HOH . R 5 HOH B 23 588 588 HOH HOH . R 5 HOH B 24 598 598 HOH HOH . R 5 HOH B 25 599 599 HOH HOH . R 5 HOH B 26 600 600 HOH HOH . R 5 HOH B 27 601 601 HOH HOH . R 5 HOH B 28 603 603 HOH HOH . R 5 HOH B 29 604 604 HOH HOH . R 5 HOH B 30 605 605 HOH HOH . R 5 HOH B 31 606 606 HOH HOH . R 5 HOH B 32 608 608 HOH HOH . R 5 HOH B 33 609 609 HOH HOH . R 5 HOH B 34 610 610 HOH HOH . R 5 HOH B 35 611 611 HOH HOH . R 5 HOH B 36 615 615 HOH HOH . R 5 HOH B 37 635 635 HOH HOH . R 5 HOH B 38 636 636 HOH HOH . R 5 HOH B 39 640 640 HOH HOH . R 5 HOH B 40 647 647 HOH HOH . R 5 HOH B 41 650 650 HOH HOH . R 5 HOH B 42 659 659 HOH HOH . R 5 HOH B 43 660 660 HOH HOH . S 5 HOH D 1 509 509 HOH HOH . S 5 HOH D 2 514 514 HOH HOH . S 5 HOH D 3 536 536 HOH HOH . S 5 HOH D 4 545 545 HOH HOH . S 5 HOH D 5 554 554 HOH HOH . S 5 HOH D 6 557 557 HOH HOH . S 5 HOH D 7 574 574 HOH HOH . S 5 HOH D 8 575 575 HOH HOH . S 5 HOH D 9 576 576 HOH HOH . S 5 HOH D 10 584 584 HOH HOH . S 5 HOH D 11 586 586 HOH HOH . S 5 HOH D 12 592 592 HOH HOH . S 5 HOH D 13 593 593 HOH HOH . S 5 HOH D 14 595 595 HOH HOH . S 5 HOH D 15 612 612 HOH HOH . S 5 HOH D 16 625 625 HOH HOH . S 5 HOH D 17 626 626 HOH HOH . S 5 HOH D 18 629 629 HOH HOH . S 5 HOH D 19 630 630 HOH HOH . S 5 HOH D 20 631 631 HOH HOH . S 5 HOH D 21 641 641 HOH HOH . S 5 HOH D 22 644 644 HOH HOH . S 5 HOH D 23 645 645 HOH HOH . S 5 HOH D 24 646 646 HOH HOH . S 5 HOH D 25 648 648 HOH HOH . S 5 HOH D 26 649 649 HOH HOH . S 5 HOH D 27 652 652 HOH HOH . S 5 HOH D 28 653 653 HOH HOH . S 5 HOH D 29 654 654 HOH HOH . S 5 HOH D 30 655 655 HOH HOH . S 5 HOH D 31 656 656 HOH HOH . S 5 HOH D 32 657 657 HOH HOH . S 5 HOH D 33 658 658 HOH HOH . S 5 HOH D 34 667 667 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 3 -1.095 25.719 3.482 1 35.2 ? C1 GOL 201 C 1 HETATM 2 O O1 GOL . . . I 3 -0.278 26.162 4.534 1 30.64 ? O1 GOL 201 C 1 HETATM 3 C C2 GOL . . . I 3 -2.27 25.018 4.119 1 37.36 ? C2 GOL 201 C 1 HETATM 4 O O2 GOL . . . I 3 -3.165 24.575 3.118 1 39.91 ? O2 GOL 201 C 1 HETATM 5 C C3 GOL . . . I 3 -2.916 26.08 4.991 1 37.36 ? C3 GOL 201 C 1 HETATM 6 O O3 GOL . . . I 3 -3.034 27.249 4.212 1 37.46 ? O3 GOL 201 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #