data_1ZNQ # _model_server_result.job_id R9gMvIUFEknEahg8DSvYBg _model_server_result.datetime_utc '2024-11-21 17:43:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1znq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1003}' # _entry.id 1ZNQ # _exptl.entry_id 1ZNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZNQ _cell.length_a 124.5 _cell.length_b 132.31 _cell.length_c 86.037 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1ZNQ _atom_sites.fract_transf_matrix[1][1] 0.008032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD O 1 1001 1001 NAD NAE . F 2 NAD P 1 1002 1002 NAD NAE . G 2 NAD R 1 1003 1003 NAD NAE . H 2 NAD Q 1 1004 1004 NAD NAE . I 3 HOH O 1 1002 2 HOH HOH . I 3 HOH O 2 1003 3 HOH HOH . I 3 HOH O 3 1004 5 HOH HOH . I 3 HOH O 4 1005 7 HOH HOH . I 3 HOH O 5 1006 13 HOH HOH . I 3 HOH O 6 1007 22 HOH HOH . I 3 HOH O 7 1008 25 HOH HOH . I 3 HOH O 8 1009 26 HOH HOH . I 3 HOH O 9 1010 28 HOH HOH . I 3 HOH O 10 1011 31 HOH HOH . I 3 HOH O 11 1012 35 HOH HOH . I 3 HOH O 12 1013 38 HOH HOH . I 3 HOH O 13 1014 41 HOH HOH . I 3 HOH O 14 1015 43 HOH HOH . I 3 HOH O 15 1016 49 HOH HOH . I 3 HOH O 16 1017 56 HOH HOH . I 3 HOH O 17 1018 60 HOH HOH . I 3 HOH O 18 1019 66 HOH HOH . I 3 HOH O 19 1020 68 HOH HOH . I 3 HOH O 20 1021 71 HOH HOH . I 3 HOH O 21 1022 74 HOH HOH . I 3 HOH O 22 1023 75 HOH HOH . I 3 HOH O 23 1024 77 HOH HOH . I 3 HOH O 24 1025 80 HOH HOH . I 3 HOH O 25 1026 92 HOH HOH . I 3 HOH O 26 1027 95 HOH HOH . I 3 HOH O 27 1028 98 HOH HOH . I 3 HOH O 28 1029 106 HOH HOH . I 3 HOH O 29 1030 107 HOH HOH . I 3 HOH O 30 1031 108 HOH HOH . I 3 HOH O 31 1032 109 HOH HOH . I 3 HOH O 32 1033 113 HOH HOH . I 3 HOH O 33 1034 118 HOH HOH . I 3 HOH O 34 1035 126 HOH HOH . I 3 HOH O 35 1036 128 HOH HOH . I 3 HOH O 36 1037 132 HOH HOH . I 3 HOH O 37 1038 133 HOH HOH . I 3 HOH O 38 1039 134 HOH HOH . I 3 HOH O 39 1040 136 HOH HOH . I 3 HOH O 40 1041 139 HOH HOH . I 3 HOH O 41 1042 144 HOH HOH . I 3 HOH O 42 1043 147 HOH HOH . I 3 HOH O 43 1044 148 HOH HOH . J 3 HOH P 1 1003 4 HOH HOH . J 3 HOH P 2 1004 12 HOH HOH . J 3 HOH P 3 1005 16 HOH HOH . J 3 HOH P 4 1006 18 HOH HOH . J 3 HOH P 5 1007 23 HOH HOH . J 3 HOH P 6 1008 24 HOH HOH . J 3 HOH P 7 1009 27 HOH HOH . J 3 HOH P 8 1010 32 HOH HOH . J 3 HOH P 9 1011 37 HOH HOH . J 3 HOH P 10 1012 44 HOH HOH . J 3 HOH P 11 1013 54 HOH HOH . J 3 HOH P 12 1014 55 HOH HOH . J 3 HOH P 13 1015 59 HOH HOH . J 3 HOH P 14 1016 67 HOH HOH . J 3 HOH P 15 1017 72 HOH HOH . J 3 HOH P 16 1018 82 HOH HOH . J 3 HOH P 17 1019 83 HOH HOH . J 3 HOH P 18 1020 85 HOH HOH . J 3 HOH P 19 1021 86 HOH HOH . J 3 HOH P 20 1022 87 HOH HOH . J 3 HOH P 21 1023 88 HOH HOH . J 3 HOH P 22 1024 91 HOH HOH . J 3 HOH P 23 1025 93 HOH HOH . J 3 HOH P 24 1026 97 HOH HOH . J 3 HOH P 25 1027 101 HOH HOH . J 3 HOH P 26 1028 103 HOH HOH . J 3 HOH P 27 1029 104 HOH HOH . J 3 HOH P 28 1030 110 HOH HOH . J 3 HOH P 29 1031 112 HOH HOH . J 3 HOH P 30 1032 117 HOH HOH . J 3 HOH P 31 1033 121 HOH HOH . J 3 HOH P 32 1034 145 HOH HOH . J 3 HOH P 33 1035 146 HOH HOH . J 3 HOH P 34 1036 150 HOH HOH . K 3 HOH R 1 1004 6 HOH HOH . K 3 HOH R 2 1005 8 HOH HOH . K 3 HOH R 3 1006 11 HOH HOH . K 3 HOH R 4 1007 17 HOH HOH . K 3 HOH R 5 1008 20 HOH HOH . K 3 HOH R 6 1009 21 HOH HOH . K 3 HOH R 7 1010 29 HOH HOH . K 3 HOH R 8 1011 30 HOH HOH . K 3 HOH R 9 1012 33 HOH HOH . K 3 HOH R 10 1013 34 HOH HOH . K 3 HOH R 11 1014 36 HOH HOH . K 3 HOH R 12 1015 40 HOH HOH . K 3 HOH R 13 1016 45 HOH HOH . K 3 HOH R 14 1017 46 HOH HOH . K 3 HOH R 15 1018 47 HOH HOH . K 3 HOH R 16 1019 48 HOH HOH . K 3 HOH R 17 1020 50 HOH HOH . K 3 HOH R 18 1021 52 HOH HOH . K 3 HOH R 19 1022 53 HOH HOH . K 3 HOH R 20 1023 57 HOH HOH . K 3 HOH R 21 1024 58 HOH HOH . K 3 HOH R 22 1025 62 HOH HOH . K 3 HOH R 23 1026 63 HOH HOH . K 3 HOH R 24 1027 64 HOH HOH . K 3 HOH R 25 1028 69 HOH HOH . K 3 HOH R 26 1029 73 HOH HOH . K 3 HOH R 27 1030 76 HOH HOH . K 3 HOH R 28 1031 79 HOH HOH . K 3 HOH R 29 1032 84 HOH HOH . K 3 HOH R 30 1033 89 HOH HOH . K 3 HOH R 31 1034 94 HOH HOH . K 3 HOH R 32 1035 99 HOH HOH . K 3 HOH R 33 1036 102 HOH HOH . K 3 HOH R 34 1037 111 HOH HOH . K 3 HOH R 35 1038 115 HOH HOH . K 3 HOH R 36 1039 119 HOH HOH . K 3 HOH R 37 1040 120 HOH HOH . K 3 HOH R 38 1041 124 HOH HOH . K 3 HOH R 39 1042 127 HOH HOH . K 3 HOH R 40 1043 131 HOH HOH . K 3 HOH R 41 1044 135 HOH HOH . K 3 HOH R 42 1045 137 HOH HOH . K 3 HOH R 43 1046 138 HOH HOH . K 3 HOH R 44 1047 142 HOH HOH . K 3 HOH R 45 1048 149 HOH HOH . L 3 HOH Q 1 1005 1 HOH HOH . L 3 HOH Q 2 1006 9 HOH HOH . L 3 HOH Q 3 1007 10 HOH HOH . L 3 HOH Q 4 1008 14 HOH HOH . L 3 HOH Q 5 1009 15 HOH HOH . L 3 HOH Q 6 1010 19 HOH HOH . L 3 HOH Q 7 1011 39 HOH HOH . L 3 HOH Q 8 1012 42 HOH HOH . L 3 HOH Q 9 1013 51 HOH HOH . L 3 HOH Q 10 1014 61 HOH HOH . L 3 HOH Q 11 1015 65 HOH HOH . L 3 HOH Q 12 1016 70 HOH HOH . L 3 HOH Q 13 1017 78 HOH HOH . L 3 HOH Q 14 1018 81 HOH HOH . L 3 HOH Q 15 1019 90 HOH HOH . L 3 HOH Q 16 1020 96 HOH HOH . L 3 HOH Q 17 1021 100 HOH HOH . L 3 HOH Q 18 1022 105 HOH HOH . L 3 HOH Q 19 1023 114 HOH HOH . L 3 HOH Q 20 1024 116 HOH HOH . L 3 HOH Q 21 1025 122 HOH HOH . L 3 HOH Q 22 1026 123 HOH HOH . L 3 HOH Q 23 1027 125 HOH HOH . L 3 HOH Q 24 1028 129 HOH HOH . L 3 HOH Q 25 1029 130 HOH HOH . L 3 HOH Q 26 1030 140 HOH HOH . L 3 HOH Q 27 1031 141 HOH HOH . L 3 HOH Q 28 1032 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 25.86 27.545 14.68 1 37.39 ? PA NAD 1003 R 1 HETATM 2 O O1A NAD . . . G 2 27.214 27.076 14.18 1 36.2 ? O1A NAD 1003 R 1 HETATM 3 O O2A NAD . . . G 2 25.424 27.185 16.066 1 37.33 ? O2A NAD 1003 R 1 HETATM 4 O O5B NAD . . . G 2 24.707 27.061 13.661 1 38.88 ? O5B NAD 1003 R 1 HETATM 5 C C5B NAD . . . G 2 24.963 26.985 12.225 1 37.91 ? C5B NAD 1003 R 1 HETATM 6 C C4B NAD . . . G 2 24.398 25.676 11.683 1 36.49 ? C4B NAD 1003 R 1 HETATM 7 O O4B NAD . . . G 2 24.647 25.662 10.248 1 36.54 ? O4B NAD 1003 R 1 HETATM 8 C C3B NAD . . . G 2 25.092 24.414 12.215 1 35.64 ? C3B NAD 1003 R 1 HETATM 9 O O3B NAD . . . G 2 24.145 23.604 12.915 1 31.58 ? O3B NAD 1003 R 1 HETATM 10 C C2B NAD . . . G 2 25.687 23.782 10.955 1 35.66 ? C2B NAD 1003 R 1 HETATM 11 O O2B NAD . . . G 2 25.654 22.336 11.07 1 37.14 ? O2B NAD 1003 R 1 HETATM 12 C C1B NAD . . . G 2 24.761 24.326 9.868 1 35.8 ? C1B NAD 1003 R 1 HETATM 13 N N9A NAD . . . G 2 25.284 24.328 8.478 1 34.62 ? N9A NAD 1003 R 1 HETATM 14 C C8A NAD . . . G 2 26.569 24.558 8.077 1 36.04 ? C8A NAD 1003 R 1 HETATM 15 N N7A NAD . . . G 2 26.736 24.492 6.746 1 36.53 ? N7A NAD 1003 R 1 HETATM 16 C C5A NAD . . . G 2 25.465 24.204 6.268 1 36.36 ? C5A NAD 1003 R 1 HETATM 17 C C6A NAD . . . G 2 25.002 24.011 4.946 1 36.71 ? C6A NAD 1003 R 1 HETATM 18 N N6A NAD . . . G 2 25.744 24.085 3.852 1 37.41 ? N6A NAD 1003 R 1 HETATM 19 N N1A NAD . . . G 2 23.655 23.735 4.766 1 37.62 ? N1A NAD 1003 R 1 HETATM 20 C C2A NAD . . . G 2 22.86 23.651 5.904 1 36.05 ? C2A NAD 1003 R 1 HETATM 21 N N3A NAD . . . G 2 23.2 23.807 7.18 1 34.96 ? N3A NAD 1003 R 1 HETATM 22 C C4A NAD . . . G 2 24.549 24.086 7.299 1 35.29 ? C4A NAD 1003 R 1 HETATM 23 O O3 NAD . . . G 2 25.852 29.094 14.562 1 37.69 ? O3 NAD 1003 R 1 HETATM 24 P PN NAD . . . G 2 24.7 30.123 15.039 1 36.18 ? PN NAD 1003 R 1 HETATM 25 O O1N NAD . . . G 2 25.316 30.814 16.203 1 39.43 ? O1N NAD 1003 R 1 HETATM 26 O O2N NAD . . . G 2 23.468 29.326 15.407 1 37.52 ? O2N NAD 1003 R 1 HETATM 27 O O5D NAD . . . G 2 24.594 31.147 13.813 1 39.79 ? O5D NAD 1003 R 1 HETATM 28 C C5D NAD . . . G 2 23.333 31.23 13.134 1 39.2 ? C5D NAD 1003 R 1 HETATM 29 C C4D NAD . . . G 2 23.384 32.372 12.124 1 40.22 ? C4D NAD 1003 R 1 HETATM 30 O O4D NAD . . . G 2 22.579 33.358 12.869 1 40.93 ? O4D NAD 1003 R 1 HETATM 31 C C3D NAD . . . G 2 24.726 33.093 11.885 1 38.74 ? C3D NAD 1003 R 1 HETATM 32 O O3D NAD . . . G 2 24.706 33.675 10.578 1 35.72 ? O3D NAD 1003 R 1 HETATM 33 C C2D NAD . . . G 2 24.751 34.187 12.945 1 40.06 ? C2D NAD 1003 R 1 HETATM 34 O O2D NAD . . . G 2 25.5 35.343 12.505 1 41.88 ? O2D NAD 1003 R 1 HETATM 35 C C1D NAD . . . G 2 23.304 34.538 13.139 1 40.72 ? C1D NAD 1003 R 1 HETATM 36 N N1N NAD . . . G 2 23.011 34.943 14.527 1 42.01 ? N1N NAD 1003 R 1 HETATM 37 C C2N NAD . . . G 2 23.574 34.271 15.642 1 40.13 ? C2N NAD 1003 R 1 HETATM 38 C C3N NAD . . . G 2 23.291 34.703 17.033 1 41.17 ? C3N NAD 1003 R 1 HETATM 39 C C7N NAD . . . G 2 23.947 33.95 18.148 1 41.12 ? C7N NAD 1003 R 1 HETATM 40 O O7N NAD . . . G 2 23.703 34.344 19.311 1 41.75 ? O7N NAD 1003 R 1 HETATM 41 N N7N NAD . . . G 2 24.778 32.89 17.967 1 41.37 ? N7N NAD 1003 R 1 HETATM 42 C C4N NAD . . . G 2 22.332 35.843 17.248 1 41.27 ? C4N NAD 1003 R 1 HETATM 43 C C5N NAD . . . G 2 21.825 36.435 15.977 1 41.56 ? C5N NAD 1003 R 1 HETATM 44 C C6N NAD . . . G 2 22.125 36.037 14.757 1 41.97 ? C6N NAD 1003 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #