data_1ZOE # _model_server_result.job_id GX1jA-vjaigxeTgQcdmURg _model_server_result.datetime_utc '2024-11-28 16:14:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zoe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1ZOE # _exptl.entry_id 1ZOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.788 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,5,6,7-TETRABROMO-N,N-DIMETHYL-1H-BENZIMIDAZOL-2-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.44 _cell.angle_gamma 90 _cell.entry_id 1ZOE _cell.length_a 143.454 _cell.length_b 60.781 _cell.length_c 45.938 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H7 Br4 N3' _chem_comp.formula_weight 476.788 _chem_comp.id K25 _chem_comp.mon_nstd_flag . _chem_comp.name 4,5,6,7-TETRABROMO-N,N-DIMETHYL-1H-BENZIMIDAZOL-2-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DIMETHYL-(4,5,6,7-TETRABROMO-1H-BENZOIMIDAZOL-2-YL)-AMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 K25 doub 182 n y C2 C5 K25 sing 183 n y C2 BR1 K25 sing 184 n n C3 C4 K25 sing 185 n y C3 BR9 K25 sing 186 n n C4 C8 K25 doub 187 n y C4 BR10 K25 sing 188 n n C5 C7 K25 doub 189 n y C5 BR11 K25 sing 190 n n N6 C8 K25 sing 191 n y N6 C13 K25 sing 192 n y N6 HN6 K25 sing 193 n n C7 C8 K25 sing 194 n y C7 N14 K25 sing 195 n y C13 N14 K25 doub 196 n y C13 N15 K25 sing 197 n n N15 C16 K25 sing 198 n n N15 C17 K25 sing 199 n n C16 H161 K25 sing 200 n n C16 H162 K25 sing 201 n n C16 H163 K25 sing 202 n n C17 H171 K25 sing 203 n n C17 H172 K25 sing 204 n n C17 H173 K25 sing 205 n n # _atom_sites.entry_id 1ZOE _atom_sites.fract_transf_matrix[1][1] 0.006971 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001666 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 601 601 CL CL . C 3 K25 A 1 501 501 K25 K25 . D 4 DMS A 1 701 701 DMS DMS . E 5 HOH A 1 1001 1001 HOH HOH . E 5 HOH A 2 1002 1002 HOH HOH . E 5 HOH A 3 1003 1003 HOH HOH . E 5 HOH A 4 1004 1004 HOH HOH . E 5 HOH A 5 1005 1005 HOH HOH . E 5 HOH A 6 1006 1006 HOH HOH . E 5 HOH A 7 1007 1007 HOH HOH . E 5 HOH A 8 1008 1008 HOH HOH . E 5 HOH A 9 1009 1009 HOH HOH . E 5 HOH A 10 1010 1010 HOH HOH . E 5 HOH A 11 1011 1011 HOH HOH . E 5 HOH A 12 1012 1012 HOH HOH . E 5 HOH A 13 1013 1013 HOH HOH . E 5 HOH A 14 1014 1014 HOH HOH . E 5 HOH A 15 1015 1015 HOH HOH . E 5 HOH A 16 1016 1016 HOH HOH . E 5 HOH A 17 1017 1017 HOH HOH . E 5 HOH A 18 1018 1018 HOH HOH . E 5 HOH A 19 1019 1019 HOH HOH . E 5 HOH A 20 1020 1020 HOH HOH . E 5 HOH A 21 1022 1022 HOH HOH . E 5 HOH A 22 1023 1023 HOH HOH . E 5 HOH A 23 1024 1024 HOH HOH . E 5 HOH A 24 1026 1026 HOH HOH . E 5 HOH A 25 1027 1027 HOH HOH . E 5 HOH A 26 1028 1028 HOH HOH . E 5 HOH A 27 1029 1029 HOH HOH . E 5 HOH A 28 1030 1030 HOH HOH . E 5 HOH A 29 1031 1031 HOH HOH . E 5 HOH A 30 1032 1032 HOH HOH . E 5 HOH A 31 1033 1033 HOH HOH . E 5 HOH A 32 1034 1034 HOH HOH . E 5 HOH A 33 1035 1035 HOH HOH . E 5 HOH A 34 1036 1036 HOH HOH . E 5 HOH A 35 1037 1037 HOH HOH . E 5 HOH A 36 1038 1038 HOH HOH . E 5 HOH A 37 1039 1039 HOH HOH . E 5 HOH A 38 1040 1040 HOH HOH . E 5 HOH A 39 1041 1041 HOH HOH . E 5 HOH A 40 1042 1042 HOH HOH . E 5 HOH A 41 1043 1043 HOH HOH . E 5 HOH A 42 1044 1044 HOH HOH . E 5 HOH A 43 1045 1045 HOH HOH . E 5 HOH A 44 1046 1046 HOH HOH . E 5 HOH A 45 1048 1048 HOH HOH . E 5 HOH A 46 1049 1049 HOH HOH . E 5 HOH A 47 1050 1050 HOH HOH . E 5 HOH A 48 1051 1051 HOH HOH . E 5 HOH A 49 1052 1052 HOH HOH . E 5 HOH A 50 1053 1053 HOH HOH . E 5 HOH A 51 1054 1054 HOH HOH . E 5 HOH A 52 1055 1055 HOH HOH . E 5 HOH A 53 1056 1056 HOH HOH . E 5 HOH A 54 1057 1057 HOH HOH . E 5 HOH A 55 1058 1058 HOH HOH . E 5 HOH A 56 1059 1059 HOH HOH . E 5 HOH A 57 1060 1060 HOH HOH . E 5 HOH A 58 1061 1061 HOH HOH . E 5 HOH A 59 1062 1062 HOH HOH . E 5 HOH A 60 1063 1063 HOH HOH . E 5 HOH A 61 1064 1064 HOH HOH . E 5 HOH A 62 1065 1065 HOH HOH . E 5 HOH A 63 1066 1066 HOH HOH . E 5 HOH A 64 1067 1067 HOH HOH . E 5 HOH A 65 1068 1068 HOH HOH . E 5 HOH A 66 1069 1069 HOH HOH . E 5 HOH A 67 1070 1070 HOH HOH . E 5 HOH A 68 1071 1071 HOH HOH . E 5 HOH A 69 1072 1072 HOH HOH . E 5 HOH A 70 1073 1073 HOH HOH . E 5 HOH A 71 1074 1074 HOH HOH . E 5 HOH A 72 1075 1075 HOH HOH . E 5 HOH A 73 1076 1076 HOH HOH . E 5 HOH A 74 1077 1077 HOH HOH . E 5 HOH A 75 1078 1078 HOH HOH . E 5 HOH A 76 1079 1079 HOH HOH . E 5 HOH A 77 1080 1080 HOH HOH . E 5 HOH A 78 1081 1081 HOH HOH . E 5 HOH A 79 1082 1082 HOH HOH . E 5 HOH A 80 1083 1083 HOH HOH . E 5 HOH A 81 1084 1084 HOH HOH . E 5 HOH A 82 1085 1085 HOH HOH . E 5 HOH A 83 1086 1086 HOH HOH . E 5 HOH A 84 1087 1087 HOH HOH . E 5 HOH A 85 1088 1088 HOH HOH . E 5 HOH A 86 1089 1089 HOH HOH . E 5 HOH A 87 1090 1090 HOH HOH . E 5 HOH A 88 1091 1091 HOH HOH . E 5 HOH A 89 1092 1092 HOH HOH . E 5 HOH A 90 1093 1093 HOH HOH . E 5 HOH A 91 1094 1094 HOH HOH . E 5 HOH A 92 1095 1095 HOH HOH . E 5 HOH A 93 1096 1096 HOH HOH . E 5 HOH A 94 1097 1097 HOH HOH . E 5 HOH A 95 1098 1098 HOH HOH . E 5 HOH A 96 1099 1099 HOH HOH . E 5 HOH A 97 1101 1101 HOH HOH . E 5 HOH A 98 1103 1103 HOH HOH . E 5 HOH A 99 1104 1104 HOH HOH . E 5 HOH A 100 1105 1105 HOH HOH . E 5 HOH A 101 1106 1106 HOH HOH . E 5 HOH A 102 1107 1107 HOH HOH . E 5 HOH A 103 1108 1108 HOH HOH . E 5 HOH A 104 1109 1109 HOH HOH . E 5 HOH A 105 1112 1112 HOH HOH . E 5 HOH A 106 1113 1113 HOH HOH . E 5 HOH A 107 1114 1114 HOH HOH . E 5 HOH A 108 1115 1115 HOH HOH . E 5 HOH A 109 1116 1116 HOH HOH . E 5 HOH A 110 1117 1117 HOH HOH . E 5 HOH A 111 1118 1118 HOH HOH . E 5 HOH A 112 1119 1119 HOH HOH . E 5 HOH A 113 1120 1120 HOH HOH . E 5 HOH A 114 1121 1121 HOH HOH . E 5 HOH A 115 1122 1122 HOH HOH . E 5 HOH A 116 1124 1124 HOH HOH . E 5 HOH A 117 1125 1125 HOH HOH . E 5 HOH A 118 1128 1128 HOH HOH . E 5 HOH A 119 1129 1129 HOH HOH . E 5 HOH A 120 1131 1131 HOH HOH . E 5 HOH A 121 1132 1132 HOH HOH . E 5 HOH A 122 1133 1133 HOH HOH . E 5 HOH A 123 1134 1134 HOH HOH . E 5 HOH A 124 1135 1135 HOH HOH . E 5 HOH A 125 1136 1136 HOH HOH . E 5 HOH A 126 1137 1137 HOH HOH . E 5 HOH A 127 1138 1138 HOH HOH . E 5 HOH A 128 1139 1139 HOH HOH . E 5 HOH A 129 1140 1140 HOH HOH . E 5 HOH A 130 1141 1141 HOH HOH . E 5 HOH A 131 1142 1142 HOH HOH . E 5 HOH A 132 1143 1143 HOH HOH . E 5 HOH A 133 1144 1144 HOH HOH . E 5 HOH A 134 1145 1145 HOH HOH . E 5 HOH A 135 1146 1146 HOH HOH . E 5 HOH A 136 1147 1147 HOH HOH . E 5 HOH A 137 1148 1148 HOH HOH . E 5 HOH A 138 1149 1149 HOH HOH . E 5 HOH A 139 1150 1150 HOH HOH . E 5 HOH A 140 1151 1151 HOH HOH . E 5 HOH A 141 1152 1152 HOH HOH . E 5 HOH A 142 1153 1153 HOH HOH . E 5 HOH A 143 1154 1154 HOH HOH . E 5 HOH A 144 1155 1155 HOH HOH . E 5 HOH A 145 1156 1156 HOH HOH . E 5 HOH A 146 1157 1157 HOH HOH . E 5 HOH A 147 1158 1158 HOH HOH . E 5 HOH A 148 1159 1159 HOH HOH . E 5 HOH A 149 1160 1160 HOH HOH . E 5 HOH A 150 1161 1161 HOH HOH . E 5 HOH A 151 1162 1162 HOH HOH . E 5 HOH A 152 1163 1163 HOH HOH . E 5 HOH A 153 1164 1164 HOH HOH . E 5 HOH A 154 1165 1165 HOH HOH . E 5 HOH A 155 1166 1166 HOH HOH . E 5 HOH A 156 1168 1168 HOH HOH . E 5 HOH A 157 1169 1169 HOH HOH . E 5 HOH A 158 1170 1170 HOH HOH . E 5 HOH A 159 1171 1171 HOH HOH . E 5 HOH A 160 1172 1172 HOH HOH . E 5 HOH A 161 1173 1173 HOH HOH . E 5 HOH A 162 1174 1174 HOH HOH . E 5 HOH A 163 1175 1175 HOH HOH . E 5 HOH A 164 1178 1178 HOH HOH . E 5 HOH A 165 1179 1179 HOH HOH . E 5 HOH A 166 1180 1180 HOH HOH . E 5 HOH A 167 1182 1182 HOH HOH . E 5 HOH A 168 1183 1183 HOH HOH . E 5 HOH A 169 1184 1184 HOH HOH . E 5 HOH A 170 1185 1185 HOH HOH . E 5 HOH A 171 1186 1186 HOH HOH . E 5 HOH A 172 1187 1187 HOH HOH . E 5 HOH A 173 1188 1188 HOH HOH . E 5 HOH A 174 1189 1189 HOH HOH . E 5 HOH A 175 1191 1191 HOH HOH . E 5 HOH A 176 1192 1192 HOH HOH . E 5 HOH A 177 1193 1193 HOH HOH . E 5 HOH A 178 1194 1194 HOH HOH . E 5 HOH A 179 1195 1195 HOH HOH . E 5 HOH A 180 1196 1196 HOH HOH . E 5 HOH A 181 1197 1197 HOH HOH . E 5 HOH A 182 1198 1198 HOH HOH . E 5 HOH A 183 1199 1199 HOH HOH . E 5 HOH A 184 1200 1200 HOH HOH . E 5 HOH A 185 1201 1201 HOH HOH . E 5 HOH A 186 1202 1202 HOH HOH . E 5 HOH A 187 1203 1203 HOH HOH . E 5 HOH A 188 1204 1204 HOH HOH . E 5 HOH A 189 1205 1205 HOH HOH . E 5 HOH A 190 1206 1206 HOH HOH . E 5 HOH A 191 1207 1207 HOH HOH . E 5 HOH A 192 1208 1208 HOH HOH . E 5 HOH A 193 1209 1209 HOH HOH . E 5 HOH A 194 1210 1210 HOH HOH . E 5 HOH A 195 1212 1212 HOH HOH . E 5 HOH A 196 1213 1213 HOH HOH . E 5 HOH A 197 1215 1215 HOH HOH . E 5 HOH A 198 1216 1216 HOH HOH . E 5 HOH A 199 1217 1217 HOH HOH . E 5 HOH A 200 1218 1218 HOH HOH . E 5 HOH A 201 1219 1219 HOH HOH . E 5 HOH A 202 1220 1220 HOH HOH . E 5 HOH A 203 1222 1222 HOH HOH . E 5 HOH A 204 1223 1223 HOH HOH . E 5 HOH A 205 1224 1224 HOH HOH . E 5 HOH A 206 1225 1225 HOH HOH . E 5 HOH A 207 1226 1226 HOH HOH . E 5 HOH A 208 1228 1228 HOH HOH . E 5 HOH A 209 1229 1229 HOH HOH . E 5 HOH A 210 1230 1230 HOH HOH . E 5 HOH A 211 1232 1232 HOH HOH . E 5 HOH A 212 1233 1233 HOH HOH . E 5 HOH A 213 1234 1234 HOH HOH . E 5 HOH A 214 1235 1235 HOH HOH . E 5 HOH A 215 1236 1236 HOH HOH . E 5 HOH A 216 1237 1237 HOH HOH . E 5 HOH A 217 1241 1241 HOH HOH . E 5 HOH A 218 1242 1242 HOH HOH . E 5 HOH A 219 1243 1243 HOH HOH . E 5 HOH A 220 1245 1245 HOH HOH . E 5 HOH A 221 1248 1248 HOH HOH . E 5 HOH A 222 1251 1251 HOH HOH . E 5 HOH A 223 1254 1254 HOH HOH . E 5 HOH A 224 1255 1255 HOH HOH . E 5 HOH A 225 1260 1260 HOH HOH . E 5 HOH A 226 1261 1261 HOH HOH . E 5 HOH A 227 1262 1262 HOH HOH . E 5 HOH A 228 1268 1268 HOH HOH . E 5 HOH A 229 1270 1270 HOH HOH . E 5 HOH A 230 1271 1271 HOH HOH . E 5 HOH A 231 1273 1273 HOH HOH . E 5 HOH A 232 1274 1274 HOH HOH . E 5 HOH A 233 1275 1275 HOH HOH . E 5 HOH A 234 1276 1276 HOH HOH . E 5 HOH A 235 1279 1279 HOH HOH . E 5 HOH A 236 1281 1281 HOH HOH . E 5 HOH A 237 1282 1282 HOH HOH . E 5 HOH A 238 1283 1283 HOH HOH . E 5 HOH A 239 1284 1284 HOH HOH . E 5 HOH A 240 1285 1285 HOH HOH . E 5 HOH A 241 1286 1286 HOH HOH . E 5 HOH A 242 1288 1288 HOH HOH . E 5 HOH A 243 1289 1289 HOH HOH . E 5 HOH A 244 1290 1290 HOH HOH . E 5 HOH A 245 1291 1291 HOH HOH . E 5 HOH A 246 1292 1292 HOH HOH . E 5 HOH A 247 1340 1340 HOH HOH . E 5 HOH A 248 1341 1341 HOH HOH . E 5 HOH A 249 1342 1342 HOH HOH . E 5 HOH A 250 1343 1343 HOH HOH . E 5 HOH A 251 1344 1344 HOH HOH . E 5 HOH A 252 1345 1345 HOH HOH . E 5 HOH A 253 1346 1346 HOH HOH . E 5 HOH A 254 1347 1347 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 K25 . . . C 3 21.523 8.754 19.104 1 15.24 ? C2 K25 501 A 1 HETATM 2 C C3 K25 . . . C 3 21.285 8.259 20.405 1 15.55 ? C3 K25 501 A 1 HETATM 3 C C4 K25 . . . C 3 21.977 7.127 20.856 1 15.39 ? C4 K25 501 A 1 HETATM 4 C C5 K25 . . . C 3 22.415 8.109 18.235 1 10.97 ? C5 K25 501 A 1 HETATM 5 N N6 K25 . . . C 3 23.704 5.413 20.185 1 21.84 ? N6 K25 501 A 1 HETATM 6 C C7 K25 . . . C 3 23.151 6.984 18.7 1 14.76 ? C7 K25 501 A 1 HETATM 7 C C8 K25 . . . C 3 22.89 6.518 19.986 1 11.37 ? C8 K25 501 A 1 HETATM 8 C C13 K25 . . . C 3 24.347 5.196 19.014 1 18.87 ? C13 K25 501 A 1 HETATM 9 N N14 K25 . . . C 3 24.109 6.216 18.167 1 12.65 ? N14 K25 501 A 1 HETATM 10 N N15 K25 . . . C 3 25.279 4.162 18.904 1 23.55 ? N15 K25 501 A 1 HETATM 11 C C16 K25 . . . C 3 25.488 3.267 20.007 1 36.06 ? C16 K25 501 A 1 HETATM 12 C C17 K25 . . . C 3 25.989 3.959 17.671 1 24.1 ? C17 K25 501 A 1 HETATM 13 BR BR1 K25 . . . C 3 20.467 10.203 18.473 1 38.02 ? BR1 K25 501 A 1 HETATM 14 BR BR9 K25 . . . C 3 19.981 9.058 21.558 1 30.77 ? BR9 K25 501 A 1 HETATM 15 BR BR10 K25 . . . C 3 21.852 6.412 22.621 1 44.9 ? BR10 K25 501 A 1 HETATM 16 BR BR11 K25 . . . C 3 22.925 8.869 16.574 1 27.78 ? BR11 K25 501 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #