data_1ZP0
#
_model_server_result.job_id            ly-GvIDVTaCktbrU2tWa6g 
_model_server_result.datetime_utc      '2024-11-24 16:58:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":305}' 
#
_entry.id    1ZP0 
#
_exptl.entry_id    1ZP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZP0 
_cell.length_a            70.33 
_cell.length_b            83.531 
_cell.length_c            294.18 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 161 B CYS 161 1_555 B SG CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc13 J FE HEM . C HEM 305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 245 n n 
CHA C4D HEM doub 246 n n 
CHA HHA HEM sing 247 n n 
CHB C4A HEM sing 248 n n 
CHB C1B HEM doub 249 n n 
CHB HHB HEM sing 250 n n 
CHC C4B HEM sing 251 n n 
CHC C1C HEM doub 252 n n 
CHC HHC HEM sing 253 n n 
CHD C4C HEM doub 254 n n 
CHD C1D HEM sing 255 n n 
CHD HHD HEM sing 256 n n 
C1A C2A HEM doub 257 n y 
C1A NA HEM sing 258 n y 
C2A C3A HEM sing 259 n y 
C2A CAA HEM sing 260 n n 
C3A C4A HEM doub 261 n y 
C3A CMA HEM sing 262 n n 
C4A NA HEM sing 263 n y 
CMA HMA HEM sing 264 n n 
CMA HMAA HEM sing 265 n n 
CMA HMAB HEM sing 266 n n 
CAA CBA HEM sing 267 n n 
CAA HAA HEM sing 268 n n 
CAA HAAA HEM sing 269 n n 
CBA CGA HEM sing 270 n n 
CBA HBA HEM sing 271 n n 
CBA HBAA HEM sing 272 n n 
CGA O1A HEM doub 273 n n 
CGA O2A HEM sing 274 n n 
C1B C2B HEM sing 275 n n 
C1B NB HEM sing 276 n n 
C2B C3B HEM doub 277 n n 
C2B CMB HEM sing 278 n n 
C3B C4B HEM sing 279 n n 
C3B CAB HEM sing 280 n n 
C4B NB HEM doub 281 n n 
CMB HMB HEM sing 282 n n 
CMB HMBA HEM sing 283 n n 
CMB HMBB HEM sing 284 n n 
CAB CBB HEM doub 285 n n 
CAB HAB HEM sing 286 n n 
CBB HBB HEM sing 287 n n 
CBB HBBA HEM sing 288 n n 
C1C C2C HEM sing 289 n y 
C1C NC HEM sing 290 n y 
C2C C3C HEM doub 291 n y 
C2C CMC HEM sing 292 n n 
C3C C4C HEM sing 293 n y 
C3C CAC HEM sing 294 n n 
C4C NC HEM sing 295 n y 
CMC HMC HEM sing 296 n n 
CMC HMCA HEM sing 297 n n 
CMC HMCB HEM sing 298 n n 
CAC CBC HEM doub 299 n n 
CAC HAC HEM sing 300 n n 
CBC HBC HEM sing 301 n n 
CBC HBCA HEM sing 302 n n 
C1D C2D HEM sing 303 n n 
C1D ND HEM doub 304 n n 
C2D C3D HEM doub 305 n n 
C2D CMD HEM sing 306 n n 
C3D C4D HEM sing 307 n n 
C3D CAD HEM sing 308 n n 
C4D ND HEM sing 309 n n 
CMD HMD HEM sing 310 n n 
CMD HMDA HEM sing 311 n n 
CMD HMDB HEM sing 312 n n 
CAD CBD HEM sing 313 n n 
CAD HAD HEM sing 314 n n 
CAD HADA HEM sing 315 n n 
CBD CGD HEM sing 316 n n 
CBD HBD HEM sing 317 n n 
CBD HBDA HEM sing 318 n n 
CGD O1D HEM doub 319 n n 
CGD O2D HEM sing 320 n n 
O2A H2A HEM sing 321 n n 
O2D H2D HEM sing 322 n n 
FE NA HEM sing 323 n n 
FE NB HEM sing 324 n n 
FE NC HEM sing 325 n n 
FE ND HEM sing 326 n n 
#
_atom_sites.entry_id                     1ZP0 
_atom_sites.fract_transf_matrix[1][1]    0.014219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 3NP A 1 701 701 3NP NPA . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 FS4 . 
I 9 F3S B 1 304 304 F3S F3S . 
J 10 HEM C 1 305 305 HEM HEM . 
K 11 TTF C 1 308 308 TTF TTF . 
L 11 TTF D 1 309 309 TTF TTF . 
M 12 HOH D 1 1 1 HOH TIP . 
M 12 HOH D 2 2 2 HOH TIP . 
M 12 HOH D 3 3 3 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . J 10 72.274 68.449 82.264 1 74.38 ? CHA HEM 305 C 1 
HETATM 2 C CHB HEM . . . J 10 68.51 65.55 81.474 1 76.94 ? CHB HEM 305 C 1 
HETATM 3 C CHC HEM . . . J 10 68.332 67.027 76.857 1 77.16 ? CHC HEM 305 C 1 
HETATM 4 C CHD HEM . . . J 10 72.117 69.942 77.652 1 63.66 ? CHD HEM 305 C 1 
HETATM 5 C C1A HEM . . . J 10 71.263 67.547 82.472 1 76.05 ? C1A HEM 305 C 1 
HETATM 6 C C2A HEM . . . J 10 70.951 66.899 83.746 1 78.58 ? C2A HEM 305 C 1 
HETATM 7 C C3A HEM . . . J 10 69.895 66.077 83.515 1 76.98 ? C3A HEM 305 C 1 
HETATM 8 C C4A HEM . . . J 10 69.544 66.228 82.107 1 74.86 ? C4A HEM 305 C 1 
HETATM 9 C CMA HEM . . . J 10 69.176 65.187 84.492 1 84.97 ? CMA HEM 305 C 1 
HETATM 10 C CAA HEM . . . J 10 71.675 67.134 85.057 1 86.83 ? CAA HEM 305 C 1 
HETATM 11 C CBA HEM . . . J 10 72.903 66.271 85.289 1 99.29 ? CBA HEM 305 C 1 
HETATM 12 C CGA HEM . . . J 10 73.605 66.541 86.617 1 99.86 ? CGA HEM 305 C 1 
HETATM 13 O O1A HEM . . . J 10 74.76 67.041 86.598 1 105.66 ? O1A HEM 305 C 1 
HETATM 14 O O2A HEM . . . J 10 72.988 66.263 87.68 1 97.86 ? O2A HEM 305 C 1 
HETATM 15 C C1B HEM . . . J 10 68.121 65.681 80.154 1 77.52 ? C1B HEM 305 C 1 
HETATM 16 C C2B HEM . . . J 10 67.022 64.96 79.538 1 81.88 ? C2B HEM 305 C 1 
HETATM 17 C C3B HEM . . . J 10 66.975 65.384 78.242 1 80.98 ? C3B HEM 305 C 1 
HETATM 18 C C4B HEM . . . J 10 68.046 66.341 78.054 1 76.81 ? C4B HEM 305 C 1 
HETATM 19 C CMB HEM . . . J 10 66.128 63.973 80.229 1 84.36 ? CMB HEM 305 C 1 
HETATM 20 C CAB HEM . . . J 10 66.048 64.981 77.176 1 82.97 ? CAB HEM 305 C 1 
HETATM 21 C CBB HEM . . . J 10 66.155 63.939 76.377 1 92.03 ? CBB HEM 305 C 1 
HETATM 22 C C1C HEM . . . J 10 69.34 67.954 76.63 1 72.8 ? C1C HEM 305 C 1 
HETATM 23 C C2C HEM . . . J 10 69.585 68.66 75.379 1 74.23 ? C2C HEM 305 C 1 
HETATM 24 C C3C HEM . . . J 10 70.657 69.49 75.605 1 74.47 ? C3C HEM 305 C 1 
HETATM 25 C C4C HEM . . . J 10 71.057 69.294 76.999 1 70.81 ? C4C HEM 305 C 1 
HETATM 26 C CMC HEM . . . J 10 68.786 68.461 74.114 1 57.94 ? CMC HEM 305 C 1 
HETATM 27 C CAC HEM . . . J 10 71.307 70.419 74.669 1 66.59 ? CAC HEM 305 C 1 
HETATM 28 C CBC HEM . . . J 10 70.868 71.636 74.342 1 58.58 ? CBC HEM 305 C 1 
HETATM 29 C C1D HEM . . . J 10 72.518 69.807 78.988 1 61.55 ? C1D HEM 305 C 1 
HETATM 30 C C2D HEM . . . J 10 73.628 70.499 79.61 1 66.35 ? C2D HEM 305 C 1 
HETATM 31 C C3D HEM . . . J 10 73.667 70.065 80.922 1 69.15 ? C3D HEM 305 C 1 
HETATM 32 C C4D HEM . . . J 10 72.586 69.124 81.088 1 67.78 ? C4D HEM 305 C 1 
HETATM 33 C CMD HEM . . . J 10 74.529 71.494 78.938 1 71.47 ? CMD HEM 305 C 1 
HETATM 34 C CAD HEM . . . J 10 74.633 70.477 81.998 1 73.23 ? CAD HEM 305 C 1 
HETATM 35 C CBD HEM . . . J 10 75.51 69.288 82.451 1 74.33 ? CBD HEM 305 C 1 
HETATM 36 C CGD HEM . . . J 10 76.458 69.729 83.55 1 81.47 ? CGD HEM 305 C 1 
HETATM 37 O O1D HEM . . . J 10 76.002 69.945 84.704 1 75.16 ? O1D HEM 305 C 1 
HETATM 38 O O2D HEM . . . J 10 77.67 69.84 83.232 1 88.46 ? O2D HEM 305 C 1 
HETATM 39 N NA HEM . . . J 10 70.386 67.111 81.499 1 74.08 ? NA HEM 305 C 1 
HETATM 40 N NB HEM . . . J 10 68.728 66.507 79.23 1 74.5 ? NB HEM 305 C 1 
HETATM 41 N NC HEM . . . J 10 70.231 68.373 77.573 1 66.94 ? NC HEM 305 C 1 
HETATM 42 N ND HEM . . . J 10 71.93 68.968 79.904 1 63.89 ? ND HEM 305 C 1 
HETATM 43 FE FE HEM . . . J 10 70.349 67.74 79.537 1 71.38 ? FE HEM 305 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#