data_1ZP0 # _model_server_result.job_id yRZL6Mw0iNlgCGiMyi2BuA _model_server_result.datetime_utc '2024-11-06 00:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":305}' # _entry.id 1ZP0 # _exptl.entry_id 1ZP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZP0 _cell.length_a 70.33 _cell.length_b 83.531 _cell.length_c 294.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 161 B CYS 161 1_555 B SG CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 J FE HEM . C HEM 305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 245 n n CHA C4D HEM doub 246 n n CHA HHA HEM sing 247 n n CHB C4A HEM sing 248 n n CHB C1B HEM doub 249 n n CHB HHB HEM sing 250 n n CHC C4B HEM sing 251 n n CHC C1C HEM doub 252 n n CHC HHC HEM sing 253 n n CHD C4C HEM doub 254 n n CHD C1D HEM sing 255 n n CHD HHD HEM sing 256 n n C1A C2A HEM doub 257 n y C1A NA HEM sing 258 n y C2A C3A HEM sing 259 n y C2A CAA HEM sing 260 n n C3A C4A HEM doub 261 n y C3A CMA HEM sing 262 n n C4A NA HEM sing 263 n y CMA HMA HEM sing 264 n n CMA HMAA HEM sing 265 n n CMA HMAB HEM sing 266 n n CAA CBA HEM sing 267 n n CAA HAA HEM sing 268 n n CAA HAAA HEM sing 269 n n CBA CGA HEM sing 270 n n CBA HBA HEM sing 271 n n CBA HBAA HEM sing 272 n n CGA O1A HEM doub 273 n n CGA O2A HEM sing 274 n n C1B C2B HEM sing 275 n n C1B NB HEM sing 276 n n C2B C3B HEM doub 277 n n C2B CMB HEM sing 278 n n C3B C4B HEM sing 279 n n C3B CAB HEM sing 280 n n C4B NB HEM doub 281 n n CMB HMB HEM sing 282 n n CMB HMBA HEM sing 283 n n CMB HMBB HEM sing 284 n n CAB CBB HEM doub 285 n n CAB HAB HEM sing 286 n n CBB HBB HEM sing 287 n n CBB HBBA HEM sing 288 n n C1C C2C HEM sing 289 n y C1C NC HEM sing 290 n y C2C C3C HEM doub 291 n y C2C CMC HEM sing 292 n n C3C C4C HEM sing 293 n y C3C CAC HEM sing 294 n n C4C NC HEM sing 295 n y CMC HMC HEM sing 296 n n CMC HMCA HEM sing 297 n n CMC HMCB HEM sing 298 n n CAC CBC HEM doub 299 n n CAC HAC HEM sing 300 n n CBC HBC HEM sing 301 n n CBC HBCA HEM sing 302 n n C1D C2D HEM sing 303 n n C1D ND HEM doub 304 n n C2D C3D HEM doub 305 n n C2D CMD HEM sing 306 n n C3D C4D HEM sing 307 n n C3D CAD HEM sing 308 n n C4D ND HEM sing 309 n n CMD HMD HEM sing 310 n n CMD HMDA HEM sing 311 n n CMD HMDB HEM sing 312 n n CAD CBD HEM sing 313 n n CAD HAD HEM sing 314 n n CAD HADA HEM sing 315 n n CBD CGD HEM sing 316 n n CBD HBD HEM sing 317 n n CBD HBDA HEM sing 318 n n CGD O1D HEM doub 319 n n CGD O2D HEM sing 320 n n O2A H2A HEM sing 321 n n O2D H2D HEM sing 322 n n FE NA HEM sing 323 n n FE NB HEM sing 324 n n FE NC HEM sing 325 n n FE ND HEM sing 326 n n # _atom_sites.entry_id 1ZP0 _atom_sites.fract_transf_matrix[1][1] 0.014219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 3NP A 1 701 701 3NP NPA . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEM C 1 305 305 HEM HEM . K 11 TTF C 1 308 308 TTF TTF . L 11 TTF D 1 309 309 TTF TTF . M 12 HOH D 1 1 1 HOH TIP . M 12 HOH D 2 2 2 HOH TIP . M 12 HOH D 3 3 3 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . J 10 72.274 68.449 82.264 1 74.38 ? CHA HEM 305 C 1 HETATM 2 C CHB HEM . . . J 10 68.51 65.55 81.474 1 76.94 ? CHB HEM 305 C 1 HETATM 3 C CHC HEM . . . J 10 68.332 67.027 76.857 1 77.16 ? CHC HEM 305 C 1 HETATM 4 C CHD HEM . . . J 10 72.117 69.942 77.652 1 63.66 ? CHD HEM 305 C 1 HETATM 5 C C1A HEM . . . J 10 71.263 67.547 82.472 1 76.05 ? C1A HEM 305 C 1 HETATM 6 C C2A HEM . . . J 10 70.951 66.899 83.746 1 78.58 ? C2A HEM 305 C 1 HETATM 7 C C3A HEM . . . J 10 69.895 66.077 83.515 1 76.98 ? C3A HEM 305 C 1 HETATM 8 C C4A HEM . . . J 10 69.544 66.228 82.107 1 74.86 ? C4A HEM 305 C 1 HETATM 9 C CMA HEM . . . J 10 69.176 65.187 84.492 1 84.97 ? CMA HEM 305 C 1 HETATM 10 C CAA HEM . . . J 10 71.675 67.134 85.057 1 86.83 ? CAA HEM 305 C 1 HETATM 11 C CBA HEM . . . J 10 72.903 66.271 85.289 1 99.29 ? CBA HEM 305 C 1 HETATM 12 C CGA HEM . . . J 10 73.605 66.541 86.617 1 99.86 ? CGA HEM 305 C 1 HETATM 13 O O1A HEM . . . J 10 74.76 67.041 86.598 1 105.66 ? O1A HEM 305 C 1 HETATM 14 O O2A HEM . . . J 10 72.988 66.263 87.68 1 97.86 ? O2A HEM 305 C 1 HETATM 15 C C1B HEM . . . J 10 68.121 65.681 80.154 1 77.52 ? C1B HEM 305 C 1 HETATM 16 C C2B HEM . . . J 10 67.022 64.96 79.538 1 81.88 ? C2B HEM 305 C 1 HETATM 17 C C3B HEM . . . J 10 66.975 65.384 78.242 1 80.98 ? C3B HEM 305 C 1 HETATM 18 C C4B HEM . . . J 10 68.046 66.341 78.054 1 76.81 ? C4B HEM 305 C 1 HETATM 19 C CMB HEM . . . J 10 66.128 63.973 80.229 1 84.36 ? CMB HEM 305 C 1 HETATM 20 C CAB HEM . . . J 10 66.048 64.981 77.176 1 82.97 ? CAB HEM 305 C 1 HETATM 21 C CBB HEM . . . J 10 66.155 63.939 76.377 1 92.03 ? CBB HEM 305 C 1 HETATM 22 C C1C HEM . . . J 10 69.34 67.954 76.63 1 72.8 ? C1C HEM 305 C 1 HETATM 23 C C2C HEM . . . J 10 69.585 68.66 75.379 1 74.23 ? C2C HEM 305 C 1 HETATM 24 C C3C HEM . . . J 10 70.657 69.49 75.605 1 74.47 ? C3C HEM 305 C 1 HETATM 25 C C4C HEM . . . J 10 71.057 69.294 76.999 1 70.81 ? C4C HEM 305 C 1 HETATM 26 C CMC HEM . . . J 10 68.786 68.461 74.114 1 57.94 ? CMC HEM 305 C 1 HETATM 27 C CAC HEM . . . J 10 71.307 70.419 74.669 1 66.59 ? CAC HEM 305 C 1 HETATM 28 C CBC HEM . . . J 10 70.868 71.636 74.342 1 58.58 ? CBC HEM 305 C 1 HETATM 29 C C1D HEM . . . J 10 72.518 69.807 78.988 1 61.55 ? C1D HEM 305 C 1 HETATM 30 C C2D HEM . . . J 10 73.628 70.499 79.61 1 66.35 ? C2D HEM 305 C 1 HETATM 31 C C3D HEM . . . J 10 73.667 70.065 80.922 1 69.15 ? C3D HEM 305 C 1 HETATM 32 C C4D HEM . . . J 10 72.586 69.124 81.088 1 67.78 ? C4D HEM 305 C 1 HETATM 33 C CMD HEM . . . J 10 74.529 71.494 78.938 1 71.47 ? CMD HEM 305 C 1 HETATM 34 C CAD HEM . . . J 10 74.633 70.477 81.998 1 73.23 ? CAD HEM 305 C 1 HETATM 35 C CBD HEM . . . J 10 75.51 69.288 82.451 1 74.33 ? CBD HEM 305 C 1 HETATM 36 C CGD HEM . . . J 10 76.458 69.729 83.55 1 81.47 ? CGD HEM 305 C 1 HETATM 37 O O1D HEM . . . J 10 76.002 69.945 84.704 1 75.16 ? O1D HEM 305 C 1 HETATM 38 O O2D HEM . . . J 10 77.67 69.84 83.232 1 88.46 ? O2D HEM 305 C 1 HETATM 39 N NA HEM . . . J 10 70.386 67.111 81.499 1 74.08 ? NA HEM 305 C 1 HETATM 40 N NB HEM . . . J 10 68.728 66.507 79.23 1 74.5 ? NB HEM 305 C 1 HETATM 41 N NC HEM . . . J 10 70.231 68.373 77.573 1 66.94 ? NC HEM 305 C 1 HETATM 42 N ND HEM . . . J 10 71.93 68.968 79.904 1 63.89 ? ND HEM 305 C 1 HETATM 43 FE FE HEM . . . J 10 70.349 67.74 79.537 1 71.38 ? FE HEM 305 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #