data_1ZP0
#
_model_server_result.job_id            cgQMlu8rPBtINMKWxFyqUA 
_model_server_result.datetime_utc      '2024-11-06 00:26:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":700}' 
#
_entry.id    1ZP0 
#
_exptl.entry_id    1ZP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZP0 
_cell.length_a            70.33 
_cell.length_b            83.531 
_cell.length_c            294.18 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 161 B CYS 161 1_555 B SG CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? 
metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? 
metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc13 J FE HEM . C HEM 305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 104 n n 
PA O2A FAD sing 105 n n 
PA O5B FAD sing 106 n n 
PA O3P FAD sing 107 n n 
O2A HOA2 FAD sing 108 n n 
O5B C5B FAD sing 109 n n 
C5B C4B FAD sing 110 n n 
C5B H51A FAD sing 111 n n 
C5B H52A FAD sing 112 n n 
C4B O4B FAD sing 113 n n 
C4B C3B FAD sing 114 n n 
C4B H4B FAD sing 115 n n 
O4B C1B FAD sing 116 n n 
C3B O3B FAD sing 117 n n 
C3B C2B FAD sing 118 n n 
C3B H3B FAD sing 119 n n 
O3B HO3A FAD sing 120 n n 
C2B O2B FAD sing 121 n n 
C2B C1B FAD sing 122 n n 
C2B H2B FAD sing 123 n n 
O2B HO2A FAD sing 124 n n 
C1B N9A FAD sing 125 n n 
C1B H1B FAD sing 126 n n 
N9A C8A FAD sing 127 n y 
N9A C4A FAD sing 128 n y 
C8A N7A FAD doub 129 n y 
C8A H8A FAD sing 130 n n 
N7A C5A FAD sing 131 n y 
C5A C6A FAD sing 132 n y 
C5A C4A FAD doub 133 n y 
C6A N6A FAD sing 134 n n 
C6A N1A FAD doub 135 n y 
N6A H61A FAD sing 136 n n 
N6A H62A FAD sing 137 n n 
N1A C2A FAD sing 138 n y 
C2A N3A FAD doub 139 n y 
C2A H2A FAD sing 140 n n 
N3A C4A FAD sing 141 n y 
N1 C2 FAD sing 142 n n 
N1 C10 FAD doub 143 n n 
C2 O2 FAD doub 144 n n 
C2 N3 FAD sing 145 n n 
N3 C4 FAD sing 146 n n 
N3 HN3 FAD sing 147 n n 
C4 O4 FAD doub 148 n n 
C4 C4X FAD sing 149 n n 
C4X N5 FAD doub 150 n n 
C4X C10 FAD sing 151 n n 
N5 C5X FAD sing 152 n n 
C5X C6 FAD doub 153 n y 
C5X C9A FAD sing 154 n y 
C6 C7 FAD sing 155 n y 
C6 H6 FAD sing 156 n n 
C7 C7M FAD sing 157 n n 
C7 C8 FAD doub 158 n y 
C7M HM71 FAD sing 159 n n 
C7M HM72 FAD sing 160 n n 
C7M HM73 FAD sing 161 n n 
C8 C8M FAD sing 162 n n 
C8 C9 FAD sing 163 n y 
C8M HM81 FAD sing 164 n n 
C8M HM82 FAD sing 165 n n 
C8M HM83 FAD sing 166 n n 
C9 C9A FAD doub 167 n y 
C9 H9 FAD sing 168 n n 
C9A N10 FAD sing 169 n n 
N10 C10 FAD sing 170 n n 
N10 C1' FAD sing 171 n n 
C1' C2' FAD sing 172 n n 
C1' "H1'1" FAD sing 173 n n 
C1' "H1'2" FAD sing 174 n n 
C2' O2' FAD sing 175 n n 
C2' C3' FAD sing 176 n n 
C2' H2' FAD sing 177 n n 
O2' HO2' FAD sing 178 n n 
C3' O3' FAD sing 179 n n 
C3' C4' FAD sing 180 n n 
C3' H3' FAD sing 181 n n 
O3' HO3' FAD sing 182 n n 
C4' O4' FAD sing 183 n n 
C4' C5' FAD sing 184 n n 
C4' H4' FAD sing 185 n n 
O4' HO4' FAD sing 186 n n 
C5' O5' FAD sing 187 n n 
C5' "H5'1" FAD sing 188 n n 
C5' "H5'2" FAD sing 189 n n 
O5' P FAD sing 190 n n 
P O1P FAD doub 191 n n 
P O2P FAD sing 192 n n 
P O3P FAD sing 193 n n 
O2P HOP2 FAD sing 194 n n 
#
_atom_sites.entry_id                     1ZP0 
_atom_sites.fract_transf_matrix[1][1]    0.014219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011972 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 700 700 FAD FAD . 
F 6 3NP A 1 701 701 3NP NPA . 
G 7 FES B 1 302 302 FES FES . 
H 8 SF4 B 1 303 303 SF4 FS4 . 
I 9 F3S B 1 304 304 F3S F3S . 
J 10 HEM C 1 305 305 HEM HEM . 
K 11 TTF C 1 308 308 TTF TTF . 
L 11 TTF D 1 309 309 TTF TTF . 
M 12 HOH D 1 1 1 HOH TIP . 
M 12 HOH D 2 2 2 HOH TIP . 
M 12 HOH D 3 3 3 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 5 94.358 57.766 124.287 1 69.02 ? PA FAD 700 A 1 
HETATM 2 O O1A FAD . . . E 5 92.981 57.812 123.664 1 71.59 ? O1A FAD 700 A 1 
HETATM 3 O O2A FAD . . . E 5 95.207 56.603 124.066 1 72.79 ? O2A FAD 700 A 1 
HETATM 4 O O5B FAD . . . E 5 94.927 59.146 123.813 1 63.26 ? O5B FAD 700 A 1 
HETATM 5 C C5B FAD . . . E 5 96.237 59.634 124.117 1 57.7 ? C5B FAD 700 A 1 
HETATM 6 C C4B FAD . . . E 5 96.167 61.089 123.776 1 49.66 ? C4B FAD 700 A 1 
HETATM 7 O O4B FAD . . . E 5 97.342 61.737 124.224 1 50.54 ? O4B FAD 700 A 1 
HETATM 8 C C3B FAD . . . E 5 96.062 61.402 122.269 1 47.33 ? C3B FAD 700 A 1 
HETATM 9 O O3B FAD . . . E 5 95.153 62.407 121.943 1 41.4 ? O3B FAD 700 A 1 
HETATM 10 C C2B FAD . . . E 5 97.466 61.73 121.87 1 40.78 ? C2B FAD 700 A 1 
HETATM 11 O O2B FAD . . . E 5 97.575 62.379 120.666 1 45.41 ? O2B FAD 700 A 1 
HETATM 12 C C1B FAD . . . E 5 97.979 62.421 123.137 1 35.6 ? C1B FAD 700 A 1 
HETATM 13 N N9A FAD . . . E 5 99.383 62.314 123.301 1 40.38 ? N9A FAD 700 A 1 
HETATM 14 C C8A FAD . . . E 5 100.124 61.218 123.581 1 47.95 ? C8A FAD 700 A 1 
HETATM 15 N N7A FAD . . . E 5 101.412 61.428 123.669 1 52.41 ? N7A FAD 700 A 1 
HETATM 16 C C5A FAD . . . E 5 101.508 62.793 123.42 1 54.14 ? C5A FAD 700 A 1 
HETATM 17 C C6A FAD . . . E 5 102.61 63.703 123.354 1 53.7 ? C6A FAD 700 A 1 
HETATM 18 N N6A FAD . . . E 5 103.856 63.323 123.545 1 53.54 ? N6A FAD 700 A 1 
HETATM 19 N N1A FAD . . . E 5 102.355 65.031 123.078 1 51.52 ? N1A FAD 700 A 1 
HETATM 20 C C2A FAD . . . E 5 101.065 65.453 122.874 1 52.25 ? C2A FAD 700 A 1 
HETATM 21 N N3A FAD . . . E 5 99.958 64.692 122.909 1 50.91 ? N3A FAD 700 A 1 
HETATM 22 C C4A FAD . . . E 5 100.268 63.337 123.196 1 48.06 ? C4A FAD 700 A 1 
HETATM 23 N N1 FAD . . . E 5 88.214 50.029 127.335 1 40.58 ? N1 FAD 700 A 1 
HETATM 24 C C2 FAD . . . E 5 86.859 49.802 127.521 1 37.64 ? C2 FAD 700 A 1 
HETATM 25 O O2 FAD . . . E 5 86.253 50.076 128.581 1 31.19 ? O2 FAD 700 A 1 
HETATM 26 N N3 FAD . . . E 5 86.114 49.236 126.469 1 30.76 ? N3 FAD 700 A 1 
HETATM 27 C C4 FAD . . . E 5 86.652 48.871 125.215 1 35.66 ? C4 FAD 700 A 1 
HETATM 28 O O4 FAD . . . E 5 85.94 48.382 124.344 1 46.79 ? O4 FAD 700 A 1 
HETATM 29 C C4X FAD . . . E 5 88.015 49.093 125.036 1 31.95 ? C4X FAD 700 A 1 
HETATM 30 N N5 FAD . . . E 5 88.575 48.73 123.794 1 35.31 ? N5 FAD 700 A 1 
HETATM 31 C C5X FAD . . . E 5 89.951 48.941 123.58 1 37.9 ? C5X FAD 700 A 1 
HETATM 32 C C6 FAD . . . E 5 90.526 48.57 122.306 1 48.19 ? C6 FAD 700 A 1 
HETATM 33 C C7 FAD . . . E 5 91.917 48.754 122.052 1 48.93 ? C7 FAD 700 A 1 
HETATM 34 C C7M FAD . . . E 5 92.435 48.321 120.682 1 54.28 ? C7M FAD 700 A 1 
HETATM 35 C C8 FAD . . . E 5 92.787 49.312 123.056 1 51.78 ? C8 FAD 700 A 1 
HETATM 36 C C8M FAD . . . E 5 94.225 49.484 122.857 1 64.34 ? C8M FAD 700 A 1 
HETATM 37 C C9 FAD . . . E 5 92.22 49.711 124.338 1 50.42 ? C9 FAD 700 A 1 
HETATM 38 C C9A FAD . . . E 5 90.811 49.535 124.622 1 42.82 ? C9A FAD 700 A 1 
HETATM 39 N N10 FAD . . . E 5 90.156 49.91 125.914 1 43.07 ? N10 FAD 700 A 1 
HETATM 40 C C10 FAD . . . E 5 88.784 49.68 126.106 1 35.16 ? C10 FAD 700 A 1 
HETATM 41 C C1' FAD . . . E 5 91.012 50.527 126.944 1 47.06 ? C1' FAD 700 A 1 
HETATM 42 C C2' FAD . . . E 5 90.749 52.077 126.818 1 48.1 ? C2' FAD 700 A 1 
HETATM 43 O O2' FAD . . . E 5 90.138 52.349 125.547 1 43.99 ? O2' FAD 700 A 1 
HETATM 44 C C3' FAD . . . E 5 91.993 52.924 126.942 1 48.58 ? C3' FAD 700 A 1 
HETATM 45 O O3' FAD . . . E 5 92.588 52.673 128.178 1 68.03 ? O3' FAD 700 A 1 
HETATM 46 C C4' FAD . . . E 5 91.63 54.467 126.802 1 46.76 ? C4' FAD 700 A 1 
HETATM 47 O O4' FAD . . . E 5 91.041 54.726 125.552 1 39.82 ? O4' FAD 700 A 1 
HETATM 48 C C5' FAD . . . E 5 92.816 55.375 126.916 1 56.44 ? C5' FAD 700 A 1 
HETATM 49 O O5' FAD . . . E 5 92.254 56.71 126.761 1 44.15 ? O5' FAD 700 A 1 
HETATM 50 P P FAD . . . E 5 93.111 58.03 126.905 1 49.9 ? P FAD 700 A 1 
HETATM 51 O O1P FAD . . . E 5 92.25 59.163 126.679 1 48.1 ? O1P FAD 700 A 1 
HETATM 52 O O2P FAD . . . E 5 93.795 58.023 128.261 1 51.81 ? O2P FAD 700 A 1 
HETATM 53 O O3P FAD . . . E 5 94.231 57.875 125.855 1 60.25 ? O3P FAD 700 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           53 
#