data_1ZP0 # _model_server_result.job_id aYdrr1dkbD5jI6sHhcuhng _model_server_result.datetime_utc '2024-11-28 09:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zp0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":700}' # _entry.id 1ZP0 # _exptl.entry_id 1ZP0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZP0 _cell.length_a 70.33 _cell.length_b 83.531 _cell.length_c 294.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZP0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 161 B CYS 161 1_555 B SG CYS 163 B CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A NE2 HIS 57 A HIS 57 1_555 E C8M FAD . A FAD 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc1 B SG CYS 65 B CYS 65 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc2 B SG CYS 70 B CYS 70 1_555 G FE2 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc3 B SG CYS 73 B CYS 73 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 B SG CYS 85 B CYS 85 1_555 G FE1 FES . B FES 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 H FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc6 B SG CYS 161 B CYS 161 1_555 H FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc7 B SG CYS 164 B CYS 164 1_555 H FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc8 B SG CYS 168 B CYS 168 1_555 I FE3 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc9 B SG CYS 215 B CYS 215 1_555 I FE1 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc10 B SG CYS 221 B CYS 221 1_555 I FE4 F3S . B F3S 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc11 B SG CYS 225 B CYS 225 1_555 H FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc12 C NE2 HIS 98 C HIS 101 1_555 J FE HEM . C HEM 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc13 J FE HEM . C HEM 305 1_555 D NE2 HIS 46 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 104 n n PA O2A FAD sing 105 n n PA O5B FAD sing 106 n n PA O3P FAD sing 107 n n O2A HOA2 FAD sing 108 n n O5B C5B FAD sing 109 n n C5B C4B FAD sing 110 n n C5B H51A FAD sing 111 n n C5B H52A FAD sing 112 n n C4B O4B FAD sing 113 n n C4B C3B FAD sing 114 n n C4B H4B FAD sing 115 n n O4B C1B FAD sing 116 n n C3B O3B FAD sing 117 n n C3B C2B FAD sing 118 n n C3B H3B FAD sing 119 n n O3B HO3A FAD sing 120 n n C2B O2B FAD sing 121 n n C2B C1B FAD sing 122 n n C2B H2B FAD sing 123 n n O2B HO2A FAD sing 124 n n C1B N9A FAD sing 125 n n C1B H1B FAD sing 126 n n N9A C8A FAD sing 127 n y N9A C4A FAD sing 128 n y C8A N7A FAD doub 129 n y C8A H8A FAD sing 130 n n N7A C5A FAD sing 131 n y C5A C6A FAD sing 132 n y C5A C4A FAD doub 133 n y C6A N6A FAD sing 134 n n C6A N1A FAD doub 135 n y N6A H61A FAD sing 136 n n N6A H62A FAD sing 137 n n N1A C2A FAD sing 138 n y C2A N3A FAD doub 139 n y C2A H2A FAD sing 140 n n N3A C4A FAD sing 141 n y N1 C2 FAD sing 142 n n N1 C10 FAD doub 143 n n C2 O2 FAD doub 144 n n C2 N3 FAD sing 145 n n N3 C4 FAD sing 146 n n N3 HN3 FAD sing 147 n n C4 O4 FAD doub 148 n n C4 C4X FAD sing 149 n n C4X N5 FAD doub 150 n n C4X C10 FAD sing 151 n n N5 C5X FAD sing 152 n n C5X C6 FAD doub 153 n y C5X C9A FAD sing 154 n y C6 C7 FAD sing 155 n y C6 H6 FAD sing 156 n n C7 C7M FAD sing 157 n n C7 C8 FAD doub 158 n y C7M HM71 FAD sing 159 n n C7M HM72 FAD sing 160 n n C7M HM73 FAD sing 161 n n C8 C8M FAD sing 162 n n C8 C9 FAD sing 163 n y C8M HM81 FAD sing 164 n n C8M HM82 FAD sing 165 n n C8M HM83 FAD sing 166 n n C9 C9A FAD doub 167 n y C9 H9 FAD sing 168 n n C9A N10 FAD sing 169 n n N10 C10 FAD sing 170 n n N10 C1' FAD sing 171 n n C1' C2' FAD sing 172 n n C1' "H1'1" FAD sing 173 n n C1' "H1'2" FAD sing 174 n n C2' O2' FAD sing 175 n n C2' C3' FAD sing 176 n n C2' H2' FAD sing 177 n n O2' HO2' FAD sing 178 n n C3' O3' FAD sing 179 n n C3' C4' FAD sing 180 n n C3' H3' FAD sing 181 n n O3' HO3' FAD sing 182 n n C4' O4' FAD sing 183 n n C4' C5' FAD sing 184 n n C4' H4' FAD sing 185 n n O4' HO4' FAD sing 186 n n C5' O5' FAD sing 187 n n C5' "H5'1" FAD sing 188 n n C5' "H5'2" FAD sing 189 n n O5' P FAD sing 190 n n P O1P FAD doub 191 n n P O2P FAD sing 192 n n P O3P FAD sing 193 n n O2P HOP2 FAD sing 194 n n # _atom_sites.entry_id 1ZP0 _atom_sites.fract_transf_matrix[1][1] 0.014219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 700 700 FAD FAD . F 6 3NP A 1 701 701 3NP NPA . G 7 FES B 1 302 302 FES FES . H 8 SF4 B 1 303 303 SF4 FS4 . I 9 F3S B 1 304 304 F3S F3S . J 10 HEM C 1 305 305 HEM HEM . K 11 TTF C 1 308 308 TTF TTF . L 11 TTF D 1 309 309 TTF TTF . M 12 HOH D 1 1 1 HOH TIP . M 12 HOH D 2 2 2 HOH TIP . M 12 HOH D 3 3 3 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 94.358 57.766 124.287 1 69.02 ? PA FAD 700 A 1 HETATM 2 O O1A FAD . . . E 5 92.981 57.812 123.664 1 71.59 ? O1A FAD 700 A 1 HETATM 3 O O2A FAD . . . E 5 95.207 56.603 124.066 1 72.79 ? O2A FAD 700 A 1 HETATM 4 O O5B FAD . . . E 5 94.927 59.146 123.813 1 63.26 ? O5B FAD 700 A 1 HETATM 5 C C5B FAD . . . E 5 96.237 59.634 124.117 1 57.7 ? C5B FAD 700 A 1 HETATM 6 C C4B FAD . . . E 5 96.167 61.089 123.776 1 49.66 ? C4B FAD 700 A 1 HETATM 7 O O4B FAD . . . E 5 97.342 61.737 124.224 1 50.54 ? O4B FAD 700 A 1 HETATM 8 C C3B FAD . . . E 5 96.062 61.402 122.269 1 47.33 ? C3B FAD 700 A 1 HETATM 9 O O3B FAD . . . E 5 95.153 62.407 121.943 1 41.4 ? O3B FAD 700 A 1 HETATM 10 C C2B FAD . . . E 5 97.466 61.73 121.87 1 40.78 ? C2B FAD 700 A 1 HETATM 11 O O2B FAD . . . E 5 97.575 62.379 120.666 1 45.41 ? O2B FAD 700 A 1 HETATM 12 C C1B FAD . . . E 5 97.979 62.421 123.137 1 35.6 ? C1B FAD 700 A 1 HETATM 13 N N9A FAD . . . E 5 99.383 62.314 123.301 1 40.38 ? N9A FAD 700 A 1 HETATM 14 C C8A FAD . . . E 5 100.124 61.218 123.581 1 47.95 ? C8A FAD 700 A 1 HETATM 15 N N7A FAD . . . E 5 101.412 61.428 123.669 1 52.41 ? N7A FAD 700 A 1 HETATM 16 C C5A FAD . . . E 5 101.508 62.793 123.42 1 54.14 ? C5A FAD 700 A 1 HETATM 17 C C6A FAD . . . E 5 102.61 63.703 123.354 1 53.7 ? C6A FAD 700 A 1 HETATM 18 N N6A FAD . . . E 5 103.856 63.323 123.545 1 53.54 ? N6A FAD 700 A 1 HETATM 19 N N1A FAD . . . E 5 102.355 65.031 123.078 1 51.52 ? N1A FAD 700 A 1 HETATM 20 C C2A FAD . . . E 5 101.065 65.453 122.874 1 52.25 ? C2A FAD 700 A 1 HETATM 21 N N3A FAD . . . E 5 99.958 64.692 122.909 1 50.91 ? N3A FAD 700 A 1 HETATM 22 C C4A FAD . . . E 5 100.268 63.337 123.196 1 48.06 ? C4A FAD 700 A 1 HETATM 23 N N1 FAD . . . E 5 88.214 50.029 127.335 1 40.58 ? N1 FAD 700 A 1 HETATM 24 C C2 FAD . . . E 5 86.859 49.802 127.521 1 37.64 ? C2 FAD 700 A 1 HETATM 25 O O2 FAD . . . E 5 86.253 50.076 128.581 1 31.19 ? O2 FAD 700 A 1 HETATM 26 N N3 FAD . . . E 5 86.114 49.236 126.469 1 30.76 ? N3 FAD 700 A 1 HETATM 27 C C4 FAD . . . E 5 86.652 48.871 125.215 1 35.66 ? C4 FAD 700 A 1 HETATM 28 O O4 FAD . . . E 5 85.94 48.382 124.344 1 46.79 ? O4 FAD 700 A 1 HETATM 29 C C4X FAD . . . E 5 88.015 49.093 125.036 1 31.95 ? C4X FAD 700 A 1 HETATM 30 N N5 FAD . . . E 5 88.575 48.73 123.794 1 35.31 ? N5 FAD 700 A 1 HETATM 31 C C5X FAD . . . E 5 89.951 48.941 123.58 1 37.9 ? C5X FAD 700 A 1 HETATM 32 C C6 FAD . . . E 5 90.526 48.57 122.306 1 48.19 ? C6 FAD 700 A 1 HETATM 33 C C7 FAD . . . E 5 91.917 48.754 122.052 1 48.93 ? C7 FAD 700 A 1 HETATM 34 C C7M FAD . . . E 5 92.435 48.321 120.682 1 54.28 ? C7M FAD 700 A 1 HETATM 35 C C8 FAD . . . E 5 92.787 49.312 123.056 1 51.78 ? C8 FAD 700 A 1 HETATM 36 C C8M FAD . . . E 5 94.225 49.484 122.857 1 64.34 ? C8M FAD 700 A 1 HETATM 37 C C9 FAD . . . E 5 92.22 49.711 124.338 1 50.42 ? C9 FAD 700 A 1 HETATM 38 C C9A FAD . . . E 5 90.811 49.535 124.622 1 42.82 ? C9A FAD 700 A 1 HETATM 39 N N10 FAD . . . E 5 90.156 49.91 125.914 1 43.07 ? N10 FAD 700 A 1 HETATM 40 C C10 FAD . . . E 5 88.784 49.68 126.106 1 35.16 ? C10 FAD 700 A 1 HETATM 41 C C1' FAD . . . E 5 91.012 50.527 126.944 1 47.06 ? C1' FAD 700 A 1 HETATM 42 C C2' FAD . . . E 5 90.749 52.077 126.818 1 48.1 ? C2' FAD 700 A 1 HETATM 43 O O2' FAD . . . E 5 90.138 52.349 125.547 1 43.99 ? O2' FAD 700 A 1 HETATM 44 C C3' FAD . . . E 5 91.993 52.924 126.942 1 48.58 ? C3' FAD 700 A 1 HETATM 45 O O3' FAD . . . E 5 92.588 52.673 128.178 1 68.03 ? O3' FAD 700 A 1 HETATM 46 C C4' FAD . . . E 5 91.63 54.467 126.802 1 46.76 ? C4' FAD 700 A 1 HETATM 47 O O4' FAD . . . E 5 91.041 54.726 125.552 1 39.82 ? O4' FAD 700 A 1 HETATM 48 C C5' FAD . . . E 5 92.816 55.375 126.916 1 56.44 ? C5' FAD 700 A 1 HETATM 49 O O5' FAD . . . E 5 92.254 56.71 126.761 1 44.15 ? O5' FAD 700 A 1 HETATM 50 P P FAD . . . E 5 93.111 58.03 126.905 1 49.9 ? P FAD 700 A 1 HETATM 51 O O1P FAD . . . E 5 92.25 59.163 126.679 1 48.1 ? O1P FAD 700 A 1 HETATM 52 O O2P FAD . . . E 5 93.795 58.023 128.261 1 51.81 ? O2P FAD 700 A 1 HETATM 53 O O3P FAD . . . E 5 94.231 57.875 125.855 1 60.25 ? O3P FAD 700 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #