data_1ZP5 # _model_server_result.job_id uBoPrMV0eeaklOCE46UNTA _model_server_result.datetime_utc '2025-01-03 00:18:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1000}' # _entry.id 1ZP5 # _exptl.entry_id 1ZP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.335 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-{2-[(4'-CYANO-1,1'-BIPHENYL-4-YL)OXY]ETHYL}-N'-HYDROXY-N-METHYLUREA" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZP5 _cell.length_a 32.387 _cell.length_b 52.675 _cell.length_c 67.331 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 58 A ASP 137 1_555 B CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc2 A NE2 HIS 68 A HIS 147 1_555 D ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc3 A OD2 ASP 70 A ASP 149 1_555 D ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc4 A OD1 ASP 75 A ASP 154 1_555 C CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc5 A O GLY 76 A GLY 155 1_555 C CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc6 A O ASN 78 A ASN 157 1_555 C CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc7 A O ILE 80 A ILE 159 1_555 C CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc8 A NE2 HIS 83 A HIS 162 1_555 D ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc9 A O GLY 90 A GLY 169 1_555 B CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc10 A O GLY 92 A GLY 171 1_555 B CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc11 A OD1 ASP 94 A ASP 173 1_555 B CA CA . A CA 996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc12 A ND1 HIS 96 A HIS 175 1_555 D ZN ZN . A ZN 998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc13 A OD2 ASP 98 A ASP 177 1_555 C CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc14 A OE2 GLU 101 A GLU 180 1_555 C CA CA . A CA 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc15 A NE2 HIS 118 A HIS 197 1_555 E ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc16 A NE2 HIS 122 A HIS 201 1_555 E ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc17 A NE2 HIS 128 A HIS 207 1_555 E ZN ZN . A ZN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc18 B CA CA . A CA 996 1_555 G O HOH . A HOH 1093 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.205 ? metalc ? metalc19 B CA CA . A CA 996 1_555 G O HOH . A HOH 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc20 E ZN ZN . A ZN 999 1_555 F O3 2NI . A 2NI 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'C17 H17 N3 O3' _chem_comp.formula_weight 311.335 _chem_comp.id 2NI _chem_comp.mon_nstd_flag . _chem_comp.name "N-{2-[(4'-CYANO-1,1'-BIPHENYL-4-YL)OXY]ETHYL}-N'-HYDROXY-N-METHYLUREA" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2NI doub 1 n y C1 C6 2NI sing 2 n y C1 H1 2NI sing 3 n n C2 C3 2NI sing 4 n y C2 H2 2NI sing 5 n n C3 C4 2NI doub 6 n y C3 O1 2NI sing 7 n n C4 C5 2NI sing 8 n y C4 H4 2NI sing 9 n n C5 C6 2NI doub 10 n y C5 H5 2NI sing 11 n n C6 C7 2NI sing 12 n y C7 C8 2NI doub 13 n y C7 C12 2NI sing 14 n y C8 C9 2NI sing 15 n y C8 H8 2NI sing 16 n n C9 C10 2NI doub 17 n y C9 H9 2NI sing 18 n n C10 C11 2NI sing 19 n y C10 C13 2NI sing 20 n n C11 C12 2NI doub 21 n y C11 H11 2NI sing 22 n n C12 H12 2NI sing 23 n n C13 N1 2NI trip 24 n n O1 C14 2NI sing 25 n n C14 C15 2NI sing 26 n n C14 H141 2NI sing 27 n n C14 H142 2NI sing 28 n n C15 N2 2NI sing 29 n n C15 H151 2NI sing 30 n n C15 H152 2NI sing 31 n n N2 C16 2NI sing 32 n n N2 C17 2NI sing 33 n n C16 H161 2NI sing 34 n n C16 H162 2NI sing 35 n n C16 H163 2NI sing 36 n n C17 O2 2NI doub 37 n n C17 N3 2NI sing 38 n n N3 O3 2NI sing 39 n n N3 HN3 2NI sing 40 n n O3 HO3 2NI sing 41 n n # _atom_sites.entry_id 1ZP5 _atom_sites.fract_transf_matrix[1][1] 0.030877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 996 996 CA CA . C 2 CA A 1 997 997 CA CA . D 3 ZN A 1 998 998 ZN ZN . E 3 ZN A 1 999 999 ZN ZN . F 4 2NI A 1 1000 128 2NI 2NI . G 5 HOH A 1 1001 1 HOH HOH . G 5 HOH A 2 1002 2 HOH HOH . G 5 HOH A 3 1003 3 HOH HOH . G 5 HOH A 4 1004 4 HOH HOH . G 5 HOH A 5 1005 5 HOH HOH . G 5 HOH A 6 1006 6 HOH HOH . G 5 HOH A 7 1007 7 HOH HOH . G 5 HOH A 8 1008 8 HOH HOH . G 5 HOH A 9 1009 9 HOH HOH . G 5 HOH A 10 1010 10 HOH HOH . G 5 HOH A 11 1011 11 HOH HOH . G 5 HOH A 12 1012 12 HOH HOH . G 5 HOH A 13 1013 13 HOH HOH . G 5 HOH A 14 1014 14 HOH HOH . G 5 HOH A 15 1015 15 HOH HOH . G 5 HOH A 16 1016 16 HOH HOH . G 5 HOH A 17 1017 17 HOH HOH . G 5 HOH A 18 1018 18 HOH HOH . G 5 HOH A 19 1019 19 HOH HOH . G 5 HOH A 20 1020 20 HOH HOH . G 5 HOH A 21 1021 21 HOH HOH . G 5 HOH A 22 1022 22 HOH HOH . G 5 HOH A 23 1023 23 HOH HOH . G 5 HOH A 24 1024 24 HOH HOH . G 5 HOH A 25 1025 25 HOH HOH . G 5 HOH A 26 1026 26 HOH HOH . G 5 HOH A 27 1027 27 HOH HOH . G 5 HOH A 28 1028 28 HOH HOH . G 5 HOH A 29 1029 29 HOH HOH . G 5 HOH A 30 1030 30 HOH HOH . G 5 HOH A 31 1031 31 HOH HOH . G 5 HOH A 32 1032 32 HOH HOH . G 5 HOH A 33 1033 33 HOH HOH . G 5 HOH A 34 1034 34 HOH HOH . G 5 HOH A 35 1035 35 HOH HOH . G 5 HOH A 36 1036 36 HOH HOH . G 5 HOH A 37 1037 37 HOH HOH . G 5 HOH A 38 1038 38 HOH HOH . G 5 HOH A 39 1039 39 HOH HOH . G 5 HOH A 40 1040 40 HOH HOH . G 5 HOH A 41 1041 41 HOH HOH . G 5 HOH A 42 1042 42 HOH HOH . G 5 HOH A 43 1043 43 HOH HOH . G 5 HOH A 44 1044 44 HOH HOH . G 5 HOH A 45 1045 45 HOH HOH . G 5 HOH A 46 1046 46 HOH HOH . G 5 HOH A 47 1047 47 HOH HOH . G 5 HOH A 48 1048 48 HOH HOH . G 5 HOH A 49 1049 49 HOH HOH . G 5 HOH A 50 1050 50 HOH HOH . G 5 HOH A 51 1051 51 HOH HOH . G 5 HOH A 52 1052 52 HOH HOH . G 5 HOH A 53 1053 53 HOH HOH . G 5 HOH A 54 1054 54 HOH HOH . G 5 HOH A 55 1055 55 HOH HOH . G 5 HOH A 56 1056 56 HOH HOH . G 5 HOH A 57 1057 57 HOH HOH . G 5 HOH A 58 1058 58 HOH HOH . G 5 HOH A 59 1059 59 HOH HOH . G 5 HOH A 60 1060 60 HOH HOH . G 5 HOH A 61 1061 61 HOH HOH . G 5 HOH A 62 1062 62 HOH HOH . G 5 HOH A 63 1063 63 HOH HOH . G 5 HOH A 64 1064 64 HOH HOH . G 5 HOH A 65 1065 65 HOH HOH . G 5 HOH A 66 1066 66 HOH HOH . G 5 HOH A 67 1067 67 HOH HOH . G 5 HOH A 68 1068 68 HOH HOH . G 5 HOH A 69 1069 69 HOH HOH . G 5 HOH A 70 1070 70 HOH HOH . G 5 HOH A 71 1071 71 HOH HOH . G 5 HOH A 72 1072 72 HOH HOH . G 5 HOH A 73 1073 73 HOH HOH . G 5 HOH A 74 1074 74 HOH HOH . G 5 HOH A 75 1075 75 HOH HOH . G 5 HOH A 76 1076 76 HOH HOH . G 5 HOH A 77 1077 77 HOH HOH . G 5 HOH A 78 1078 78 HOH HOH . G 5 HOH A 79 1079 79 HOH HOH . G 5 HOH A 80 1080 80 HOH HOH . G 5 HOH A 81 1081 81 HOH HOH . G 5 HOH A 82 1082 82 HOH HOH . G 5 HOH A 83 1083 83 HOH HOH . G 5 HOH A 84 1084 84 HOH HOH . G 5 HOH A 85 1085 85 HOH HOH . G 5 HOH A 86 1086 86 HOH HOH . G 5 HOH A 87 1087 87 HOH HOH . G 5 HOH A 88 1088 88 HOH HOH . G 5 HOH A 89 1089 89 HOH HOH . G 5 HOH A 90 1090 107 HOH HOH . G 5 HOH A 91 1091 91 HOH HOH . G 5 HOH A 92 1092 92 HOH HOH . G 5 HOH A 93 1093 93 HOH HOH . G 5 HOH A 94 1094 94 HOH HOH . G 5 HOH A 95 1095 95 HOH HOH . G 5 HOH A 96 1096 96 HOH HOH . G 5 HOH A 97 1097 97 HOH HOH . G 5 HOH A 98 1098 98 HOH HOH . G 5 HOH A 99 1099 99 HOH HOH . G 5 HOH A 100 1100 100 HOH HOH . G 5 HOH A 101 1101 101 HOH HOH . G 5 HOH A 102 1102 102 HOH HOH . G 5 HOH A 103 1103 103 HOH HOH . G 5 HOH A 104 1104 104 HOH HOH . G 5 HOH A 105 1105 105 HOH HOH . G 5 HOH A 106 1106 106 HOH HOH . G 5 HOH A 107 1107 108 HOH HOH . G 5 HOH A 108 1108 109 HOH HOH . G 5 HOH A 109 1109 110 HOH HOH . G 5 HOH A 110 1110 111 HOH HOH . G 5 HOH A 111 1111 112 HOH HOH . G 5 HOH A 112 1112 113 HOH HOH . G 5 HOH A 113 1113 114 HOH HOH . G 5 HOH A 114 1114 115 HOH HOH . G 5 HOH A 115 1115 116 HOH HOH . G 5 HOH A 116 1116 117 HOH HOH . G 5 HOH A 117 1117 118 HOH HOH . G 5 HOH A 118 1118 119 HOH HOH . G 5 HOH A 119 1119 120 HOH HOH . G 5 HOH A 120 1120 121 HOH HOH . G 5 HOH A 121 1121 122 HOH HOH . G 5 HOH A 122 1122 123 HOH HOH . G 5 HOH A 123 1123 124 HOH HOH . G 5 HOH A 124 1124 125 HOH HOH . G 5 HOH A 125 1125 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2NI . . . F 4 -2.974 22.854 8.295 1 38.06 ? C1 2NI 1000 A 1 HETATM 2 C C2 2NI . . . F 4 -3.391 23.299 9.587 1 39.61 ? C2 2NI 1000 A 1 HETATM 3 C C3 2NI . . . F 4 -2.653 22.926 10.768 1 38.45 ? C3 2NI 1000 A 1 HETATM 4 C C4 2NI . . . F 4 -1.487 22.097 10.606 1 38.26 ? C4 2NI 1000 A 1 HETATM 5 C C5 2NI . . . F 4 -1.071 21.649 9.309 1 37.27 ? C5 2NI 1000 A 1 HETATM 6 C C6 2NI . . . F 4 -1.814 22.022 8.129 1 36.09 ? C6 2NI 1000 A 1 HETATM 7 C C7 2NI . . . F 4 -1.391 21.541 6.754 1 35.36 ? C7 2NI 1000 A 1 HETATM 8 C C8 2NI . . . F 4 -0.369 20.528 6.606 1 34.38 ? C8 2NI 1000 A 1 HETATM 9 C C9 2NI . . . F 4 0.018 20.06 5.309 1 34.81 ? C9 2NI 1000 A 1 HETATM 10 C C10 2NI . . . F 4 -0.61 20.598 4.137 1 35.55 ? C10 2NI 1000 A 1 HETATM 11 C C11 2NI . . . F 4 -1.618 21.604 4.26 1 34.08 ? C11 2NI 1000 A 1 HETATM 12 C C12 2NI . . . F 4 -2.007 22.072 5.552 1 34.78 ? C12 2NI 1000 A 1 HETATM 13 C C13 2NI . . . F 4 -0.216 20.106 2.814 1 36.04 ? C13 2NI 1000 A 1 HETATM 14 N N1 2NI . . . F 4 0.074 19.696 1.779 1 39.53 ? N1 2NI 1000 A 1 HETATM 15 O O1 2NI . . . F 4 -3.086 23.368 12.086 1 39.5 ? O1 2NI 1000 A 1 HETATM 16 C C14 2NI . . . F 4 -3.756 24.657 12.115 1 40.21 ? C14 2NI 1000 A 1 HETATM 17 C C15 2NI . . . F 4 -2.875 25.814 12.592 1 40.21 ? C15 2NI 1000 A 1 HETATM 18 N N2 2NI . . . F 4 -3.462 27.178 12.143 1 40.75 ? N2 2NI 1000 A 1 HETATM 19 C C16 2NI . . . F 4 -3.989 27.821 13.39 1 39.53 ? C16 2NI 1000 A 1 HETATM 20 C C17 2NI . . . F 4 -2.334 27.909 11.526 1 40.82 ? C17 2NI 1000 A 1 HETATM 21 O O2 2NI . . . F 4 -2.471 29.14 11.399 1 42.07 ? O2 2NI 1000 A 1 HETATM 22 N N3 2NI . . . F 4 -1.137 27.253 11.078 1 41.24 ? N3 2NI 1000 A 1 HETATM 23 O O3 2NI . . . F 4 -1.147 26.193 10.058 1 36.4 ? O3 2NI 1000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #