data_1ZPB # _model_server_result.job_id nUmTaaD9zKylDhRKcuNfoQ _model_server_result.datetime_utc '2025-01-15 19:34:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1ZPB # _exptl.entry_id 1ZPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.603 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-METHYL-PENTANOIC ACID {1-[4-GUANIDINO-1-(THIAZOLE-2-CARBONYL)-BUTYLCARBAMOYL]-2-METHYL-PROPYL}-AMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZPB _cell.length_a 121.173 _cell.length_b 121.173 _cell.length_c 121.173 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A OG SER 188 A SER 195 1_555 C CX 995 . A 995 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C20 H36 N6 O3 S' _chem_comp.formula_weight 440.603 _chem_comp.id 995 _chem_comp.mon_nstd_flag . _chem_comp.name '4-METHYL-PENTANOIC ACID {1-[4-GUANIDINO-1-(THIAZOLE-2-CARBONYL)-BUTYLCARBAMOYL]-2-METHYL-PROPYL}-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CX CY 995 sing 1 n n CX CZ 995 sing 2 n n CX OX 995 doub 3 n n CY C6 995 sing 4 n n CY N2 995 sing 5 n n CY HY 995 sing 6 n n CZ S1 995 sing 7 n y CZ N1 995 doub 8 n y S1 C2 995 sing 9 n y C2 C3 995 doub 10 n y C2 H2 995 sing 11 n n C3 N1 995 sing 12 n y C3 H3 995 sing 13 n n C6 C7 995 sing 14 n n C6 H61 995 sing 15 n n C6 H62 995 sing 16 n n C7 C19 995 sing 17 n n C7 H71 995 sing 18 n n C7 H72 995 sing 19 n n N2 C8 995 sing 20 n n N2 HN2 995 sing 21 n n C8 C9 995 sing 22 n n C8 O3 995 doub 23 n n C9 C10 995 sing 24 n n C9 N3 995 sing 25 n n C9 H9 995 sing 26 n n C10 C11 995 sing 27 n n C10 C12 995 sing 28 n n C10 H10 995 sing 29 n n C11 H111 995 sing 30 n n C11 H112 995 sing 31 n n C11 H113 995 sing 32 n n C12 H121 995 sing 33 n n C12 H122 995 sing 34 n n C12 H123 995 sing 35 n n N3 C13 995 sing 36 n n N3 HN3 995 sing 37 n n C13 C14 995 sing 38 n n C13 O2 995 doub 39 n n C14 C15 995 sing 40 n n C14 H141 995 sing 41 n n C14 H142 995 sing 42 n n C15 C16 995 sing 43 n n C15 H151 995 sing 44 n n C15 H152 995 sing 45 n n C16 C17 995 sing 46 n n C16 C18 995 sing 47 n n C16 H16 995 sing 48 n n C17 H171 995 sing 49 n n C17 H172 995 sing 50 n n C17 H173 995 sing 51 n n C18 H181 995 sing 52 n n C18 H182 995 sing 53 n n C18 H183 995 sing 54 n n C19 N4 995 sing 55 n n C19 H191 995 sing 56 n n C19 H192 995 sing 57 n n N4 C20 995 sing 58 n n N4 HN4 995 sing 59 n n C20 N5 995 sing 60 n n C20 N6 995 sing 61 n n C20 H20 995 sing 62 n n N5 HN51 995 sing 63 n n N5 HN52 995 sing 64 n n N6 HN61 995 sing 65 n n N6 HN62 995 sing 66 n n # _atom_sites.entry_id 1ZPB _atom_sites.fract_transf_matrix[1][1] 0.008253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 302 2 SO4 SO4 . C 3 995 A 1 301 1 995 995 . D 4 HOH A 1 303 1 HOH HOH . D 4 HOH A 2 304 2 HOH HOH . D 4 HOH A 3 305 3 HOH HOH . D 4 HOH A 4 306 4 HOH HOH . D 4 HOH A 5 307 5 HOH HOH . D 4 HOH A 6 308 6 HOH HOH . D 4 HOH A 7 309 7 HOH HOH . D 4 HOH A 8 310 8 HOH HOH . D 4 HOH A 9 311 9 HOH HOH . D 4 HOH A 10 312 10 HOH HOH . D 4 HOH A 11 313 11 HOH HOH . D 4 HOH A 12 314 12 HOH HOH . D 4 HOH A 13 315 13 HOH HOH . D 4 HOH A 14 316 14 HOH HOH . D 4 HOH A 15 317 15 HOH HOH . D 4 HOH A 16 318 16 HOH HOH . D 4 HOH A 17 319 17 HOH HOH . D 4 HOH A 18 320 18 HOH HOH . D 4 HOH A 19 321 19 HOH HOH . D 4 HOH A 20 322 20 HOH HOH . D 4 HOH A 21 323 21 HOH HOH . D 4 HOH A 22 324 22 HOH HOH . D 4 HOH A 23 325 23 HOH HOH . D 4 HOH A 24 326 24 HOH HOH . D 4 HOH A 25 327 25 HOH HOH . D 4 HOH A 26 328 26 HOH HOH . D 4 HOH A 27 329 27 HOH HOH . D 4 HOH A 28 330 28 HOH HOH . D 4 HOH A 29 331 29 HOH HOH . D 4 HOH A 30 332 30 HOH HOH . D 4 HOH A 31 333 31 HOH HOH . D 4 HOH A 32 334 32 HOH HOH . D 4 HOH A 33 335 33 HOH HOH . D 4 HOH A 34 336 34 HOH HOH . D 4 HOH A 35 337 35 HOH HOH . D 4 HOH A 36 338 36 HOH HOH . D 4 HOH A 37 339 37 HOH HOH . D 4 HOH A 38 340 38 HOH HOH . D 4 HOH A 39 341 39 HOH HOH . D 4 HOH A 40 342 40 HOH HOH . D 4 HOH A 41 343 41 HOH HOH . D 4 HOH A 42 344 42 HOH HOH . D 4 HOH A 43 345 43 HOH HOH . D 4 HOH A 44 346 44 HOH HOH . D 4 HOH A 45 347 45 HOH HOH . D 4 HOH A 46 348 46 HOH HOH . D 4 HOH A 47 349 47 HOH HOH . D 4 HOH A 48 350 48 HOH HOH . D 4 HOH A 49 351 49 HOH HOH . D 4 HOH A 50 352 50 HOH HOH . D 4 HOH A 51 353 51 HOH HOH . D 4 HOH A 52 354 52 HOH HOH . D 4 HOH A 53 355 53 HOH HOH . D 4 HOH A 54 356 54 HOH HOH . D 4 HOH A 55 357 55 HOH HOH . D 4 HOH A 56 358 56 HOH HOH . D 4 HOH A 57 359 57 HOH HOH . D 4 HOH A 58 360 58 HOH HOH . D 4 HOH A 59 361 59 HOH HOH . D 4 HOH A 60 362 60 HOH HOH . D 4 HOH A 61 363 61 HOH HOH . D 4 HOH A 62 364 62 HOH HOH . D 4 HOH A 63 365 63 HOH HOH . D 4 HOH A 64 366 64 HOH HOH . D 4 HOH A 65 367 65 HOH HOH . D 4 HOH A 66 368 66 HOH HOH . D 4 HOH A 67 369 67 HOH HOH . D 4 HOH A 68 370 68 HOH HOH . D 4 HOH A 69 371 69 HOH HOH . D 4 HOH A 70 372 70 HOH HOH . D 4 HOH A 71 373 71 HOH HOH . D 4 HOH A 72 374 72 HOH HOH . D 4 HOH A 73 375 73 HOH HOH . D 4 HOH A 74 376 74 HOH HOH . D 4 HOH A 75 377 75 HOH HOH . D 4 HOH A 76 378 76 HOH HOH . D 4 HOH A 77 379 77 HOH HOH . D 4 HOH A 78 380 78 HOH HOH . D 4 HOH A 79 381 79 HOH HOH . D 4 HOH A 80 382 80 HOH HOH . D 4 HOH A 81 383 81 HOH HOH . D 4 HOH A 82 384 82 HOH HOH . D 4 HOH A 83 385 83 HOH HOH . D 4 HOH A 84 386 84 HOH HOH . D 4 HOH A 85 387 85 HOH HOH . D 4 HOH A 86 388 86 HOH HOH . D 4 HOH A 87 389 87 HOH HOH . D 4 HOH A 88 390 88 HOH HOH . D 4 HOH A 89 391 89 HOH HOH . D 4 HOH A 90 392 90 HOH HOH . D 4 HOH A 91 393 91 HOH HOH . D 4 HOH A 92 394 92 HOH HOH . D 4 HOH A 93 395 93 HOH HOH . D 4 HOH A 94 396 94 HOH HOH . D 4 HOH A 95 397 95 HOH HOH . D 4 HOH A 96 398 96 HOH HOH . D 4 HOH A 97 399 97 HOH HOH . D 4 HOH A 98 400 98 HOH HOH . D 4 HOH A 99 401 99 HOH HOH . D 4 HOH A 100 402 100 HOH HOH . D 4 HOH A 101 403 101 HOH HOH . D 4 HOH A 102 404 102 HOH HOH . D 4 HOH A 103 405 103 HOH HOH . D 4 HOH A 104 406 104 HOH HOH . D 4 HOH A 105 407 105 HOH HOH . D 4 HOH A 106 408 106 HOH HOH . D 4 HOH A 107 409 107 HOH HOH . D 4 HOH A 108 410 108 HOH HOH . D 4 HOH A 109 411 109 HOH HOH . D 4 HOH A 110 412 110 HOH HOH . D 4 HOH A 111 413 111 HOH HOH . D 4 HOH A 112 414 112 HOH HOH . D 4 HOH A 113 415 113 HOH HOH . D 4 HOH A 114 416 114 HOH HOH . D 4 HOH A 115 417 115 HOH HOH . D 4 HOH A 116 418 116 HOH HOH . D 4 HOH A 117 419 117 HOH HOH . D 4 HOH A 118 420 118 HOH HOH . D 4 HOH A 119 421 119 HOH HOH . D 4 HOH A 120 422 120 HOH HOH . D 4 HOH A 121 423 121 HOH HOH . D 4 HOH A 122 424 122 HOH HOH . D 4 HOH A 123 425 123 HOH HOH . D 4 HOH A 124 426 124 HOH HOH . D 4 HOH A 125 427 125 HOH HOH . D 4 HOH A 126 428 126 HOH HOH . D 4 HOH A 127 429 127 HOH HOH . D 4 HOH A 128 430 128 HOH HOH . D 4 HOH A 129 431 129 HOH HOH . D 4 HOH A 130 432 130 HOH HOH . D 4 HOH A 131 433 131 HOH HOH . D 4 HOH A 132 434 132 HOH HOH . D 4 HOH A 133 435 133 HOH HOH . D 4 HOH A 134 436 134 HOH HOH . D 4 HOH A 135 437 135 HOH HOH . D 4 HOH A 136 438 136 HOH HOH . D 4 HOH A 137 439 137 HOH HOH . D 4 HOH A 138 440 138 HOH HOH . D 4 HOH A 139 441 139 HOH HOH . D 4 HOH A 140 442 140 HOH HOH . D 4 HOH A 141 443 141 HOH HOH . D 4 HOH A 142 444 142 HOH HOH . D 4 HOH A 143 445 143 HOH HOH . D 4 HOH A 144 446 144 HOH HOH . D 4 HOH A 145 447 145 HOH HOH . D 4 HOH A 146 448 146 HOH HOH . D 4 HOH A 147 449 147 HOH HOH . D 4 HOH A 148 450 148 HOH HOH . D 4 HOH A 149 451 149 HOH HOH . D 4 HOH A 150 452 150 HOH HOH . D 4 HOH A 151 453 151 HOH HOH . D 4 HOH A 152 454 152 HOH HOH . D 4 HOH A 153 455 153 HOH HOH . D 4 HOH A 154 456 154 HOH HOH . D 4 HOH A 155 457 155 HOH HOH . D 4 HOH A 156 458 156 HOH HOH . D 4 HOH A 157 459 157 HOH HOH . D 4 HOH A 158 460 158 HOH HOH . D 4 HOH A 159 461 159 HOH HOH . D 4 HOH A 160 462 160 HOH HOH . D 4 HOH A 161 463 161 HOH HOH . D 4 HOH A 162 464 162 HOH HOH . D 4 HOH A 163 465 163 HOH HOH . D 4 HOH A 164 466 164 HOH HOH . D 4 HOH A 165 467 165 HOH HOH . D 4 HOH A 166 468 166 HOH HOH . D 4 HOH A 167 469 167 HOH HOH . D 4 HOH A 168 470 168 HOH HOH . D 4 HOH A 169 471 169 HOH HOH . D 4 HOH A 170 472 170 HOH HOH . D 4 HOH A 171 473 171 HOH HOH . D 4 HOH A 172 474 172 HOH HOH . D 4 HOH A 173 475 173 HOH HOH . D 4 HOH A 174 476 174 HOH HOH . D 4 HOH A 175 477 175 HOH HOH . D 4 HOH A 176 478 176 HOH HOH . D 4 HOH A 177 479 177 HOH HOH . D 4 HOH A 178 480 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CX 995 . . . C 3 11.302 51.077 25.353 1 25.89 ? CX 995 301 A 1 HETATM 2 C CY 995 . . . C 3 11.64 51.145 23.849 1 24.54 ? CY 995 301 A 1 HETATM 3 C CZ 995 . . . C 3 11.644 52.367 26.12 1 29.03 ? CZ 995 301 A 1 HETATM 4 O OX 995 . . . C 3 9.906 50.866 25.472 1 24.09 ? OX 995 301 A 1 HETATM 5 S S1 995 . . . C 3 10.488 53.604 26.447 1 36.59 ? S1 995 301 A 1 HETATM 6 C C2 995 . . . C 3 11.744 54.451 27.237 1 33.58 ? C2 995 301 A 1 HETATM 7 C C3 995 . . . C 3 12.947 53.76 27.205 1 30.97 ? C3 995 301 A 1 HETATM 8 N N1 995 . . . C 3 12.848 52.545 26.542 1 30.2 ? N1 995 301 A 1 HETATM 9 C C6 995 . . . C 3 11.284 49.831 23.124 1 26.08 ? C6 995 301 A 1 HETATM 10 C C7 995 . . . C 3 11.195 50.054 21.605 1 22.61 ? C7 995 301 A 1 HETATM 11 N N2 995 . . . C 3 13.057 51.343 23.673 1 25.25 ? N2 995 301 A 1 HETATM 12 C C8 995 . . . C 3 13.623 52.429 23.164 1 26.45 ? C8 995 301 A 1 HETATM 13 C C9 995 . . . C 3 15.148 52.387 23.088 1 26.17 ? C9 995 301 A 1 HETATM 14 C C10 995 . . . C 3 15.806 52.97 24.363 1 26.25 ? C10 995 301 A 1 HETATM 15 C C11 995 . . . C 3 15.624 54.493 24.537 1 26.32 ? C11 995 301 A 1 HETATM 16 C C12 995 . . . C 3 17.301 52.632 24.37 1 25.98 ? C12 995 301 A 1 HETATM 17 N N3 995 . . . C 3 15.619 53.087 21.879 1 24.19 ? N3 995 301 A 1 HETATM 18 C C13 995 . . . C 3 15.309 52.706 20.621 1 26.23 ? C13 995 301 A 1 HETATM 19 C C14 995 . . . C 3 15.904 53.539 19.479 1 24.83 ? C14 995 301 A 1 HETATM 20 C C15 995 . . . C 3 16.867 52.672 18.637 1 24.23 ? C15 995 301 A 1 HETATM 21 C C16 995 . . . C 3 17.341 53.32 17.311 1 25.36 ? C16 995 301 A 1 HETATM 22 C C17 995 . . . C 3 18.267 52.33 16.6 1 24.77 ? C17 995 301 A 1 HETATM 23 C C18 995 . . . C 3 18.127 54.624 17.538 1 22.16 ? C18 995 301 A 1 HETATM 24 O O2 995 . . . C 3 14.586 51.726 20.369 1 25.3 ? O2 995 301 A 1 HETATM 25 O O3 995 . . . C 3 12.978 53.409 22.777 1 27.11 ? O3 995 301 A 1 HETATM 26 C C19 995 . . . C 3 11.419 48.753 20.838 1 22.95 ? C19 995 301 A 1 HETATM 27 N N4 995 . . . C 3 11.311 49.04 19.404 1 24.05 ? N4 995 301 A 1 HETATM 28 C C20 995 . . . C 3 11.038 48.154 18.429 1 24.39 ? C20 995 301 A 1 HETATM 29 N N5 995 . . . C 3 10.833 46.86 18.72 1 22.37 ? N5 995 301 A 1 HETATM 30 N N6 995 . . . C 3 10.971 48.579 17.161 1 22.85 ? N6 995 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #