data_1ZPK
#
_model_server_result.job_id            vtWcj6BMz0Fm5vv4UwB4nA 
_model_server_result.datetime_utc      '2024-12-26 22:24:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zpk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    1ZPK 
#
_exptl.entry_id    1ZPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1ZPK 
_cell.length_a            62.483 
_cell.length_b            62.483 
_cell.length_c            82.412 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZPK 
_symmetry.cell_setting             hexagonal 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ILE 66 A ILE 66 1_555 A N CME 67 A CME 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C CME 67 A CME 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale3 B C ILE 66 B ILE 166 1_555 B N CME 67 B CME 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C CME 67 B CME 167 1_555 B N GLY 68 B GLY 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 B OD1 ASP 30 B ASP 130 1_555 E NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc2 G O HOH . B HOH 308 1_555 E NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc3 G O HOH . B HOH 362 1_555 E NA NA . B NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1ZPK 
_atom_sites.fract_transf_matrix[1][1]    0.016004 
_atom_sites.fract_transf_matrix[1][2]    0.00924 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01848 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012134 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0ZS A 1 201 201 0ZS BOC . 
D 3 CL B 1 501 501 CL CL . 
E 4 NA B 1 502 502 NA NA . 
F 5 HOH A 1 301 301 HOH HOH . 
F 5 HOH A 2 303 303 HOH HOH . 
F 5 HOH A 3 304 304 HOH HOH . 
F 5 HOH A 4 307 307 HOH HOH . 
F 5 HOH A 5 311 311 HOH HOH . 
F 5 HOH A 6 312 312 HOH HOH . 
F 5 HOH A 7 314 314 HOH HOH . 
F 5 HOH A 8 316 316 HOH HOH . 
F 5 HOH A 9 319 319 HOH HOH . 
F 5 HOH A 10 320 320 HOH HOH . 
F 5 HOH A 11 321 321 HOH HOH . 
F 5 HOH A 12 322 322 HOH HOH . 
F 5 HOH A 13 325 325 HOH HOH . 
F 5 HOH A 14 328 328 HOH HOH . 
F 5 HOH A 15 331 331 HOH HOH . 
F 5 HOH A 16 332 332 HOH HOH . 
F 5 HOH A 17 334 334 HOH HOH . 
F 5 HOH A 18 335 335 HOH HOH . 
F 5 HOH A 19 337 337 HOH HOH . 
F 5 HOH A 20 339 339 HOH HOH . 
F 5 HOH A 21 343 343 HOH HOH . 
F 5 HOH A 22 344 344 HOH HOH . 
F 5 HOH A 23 348 348 HOH HOH . 
F 5 HOH A 24 350 350 HOH HOH . 
F 5 HOH A 25 352 352 HOH HOH . 
F 5 HOH A 26 354 354 HOH HOH . 
F 5 HOH A 27 355 355 HOH HOH . 
F 5 HOH A 28 357 357 HOH HOH . 
F 5 HOH A 29 358 358 HOH HOH . 
F 5 HOH A 30 363 363 HOH HOH . 
F 5 HOH A 31 364 364 HOH HOH . 
F 5 HOH A 32 365 365 HOH HOH . 
F 5 HOH A 33 366 366 HOH HOH . 
F 5 HOH A 34 372 372 HOH HOH . 
F 5 HOH A 35 373 373 HOH HOH . 
F 5 HOH A 36 374 374 HOH HOH . 
F 5 HOH A 37 375 375 HOH HOH . 
F 5 HOH A 38 377 377 HOH HOH . 
F 5 HOH A 39 378 378 HOH HOH . 
F 5 HOH A 40 380 380 HOH HOH . 
F 5 HOH A 41 382 382 HOH HOH . 
F 5 HOH A 42 385 385 HOH HOH . 
F 5 HOH A 43 386 386 HOH HOH . 
F 5 HOH A 44 388 388 HOH HOH . 
F 5 HOH A 45 389 389 HOH HOH . 
F 5 HOH A 46 391 391 HOH HOH . 
F 5 HOH A 47 392 392 HOH HOH . 
F 5 HOH A 48 393 393 HOH HOH . 
F 5 HOH A 49 395 395 HOH HOH . 
F 5 HOH A 50 396 396 HOH HOH . 
F 5 HOH A 51 397 397 HOH HOH . 
F 5 HOH A 52 398 398 HOH HOH . 
F 5 HOH A 53 399 399 HOH HOH . 
F 5 HOH A 54 402 402 HOH HOH . 
F 5 HOH A 55 406 406 HOH HOH . 
F 5 HOH A 56 408 408 HOH HOH . 
F 5 HOH A 57 411 411 HOH HOH . 
F 5 HOH A 58 412 412 HOH HOH . 
F 5 HOH A 59 415 415 HOH HOH . 
F 5 HOH A 60 416 416 HOH HOH . 
F 5 HOH A 61 417 417 HOH HOH . 
F 5 HOH A 62 419 419 HOH HOH . 
F 5 HOH A 63 423 423 HOH HOH . 
F 5 HOH A 64 424 424 HOH HOH . 
F 5 HOH A 65 427 427 HOH HOH . 
F 5 HOH A 66 429 429 HOH HOH . 
F 5 HOH A 67 432 432 HOH HOH . 
F 5 HOH A 68 433 433 HOH HOH . 
F 5 HOH A 69 434 434 HOH HOH . 
F 5 HOH A 70 435 435 HOH HOH . 
F 5 HOH A 71 438 438 HOH HOH . 
F 5 HOH A 72 443 443 HOH HOH . 
F 5 HOH A 73 444 444 HOH HOH . 
F 5 HOH A 74 446 446 HOH HOH . 
F 5 HOH A 75 447 447 HOH HOH . 
F 5 HOH A 76 448 448 HOH HOH . 
F 5 HOH A 77 449 449 HOH HOH . 
F 5 HOH A 78 450 450 HOH HOH . 
F 5 HOH A 79 451 451 HOH HOH . 
F 5 HOH A 80 452 452 HOH HOH . 
F 5 HOH A 81 454 454 HOH HOH . 
F 5 HOH A 82 455 455 HOH HOH . 
F 5 HOH A 83 458 458 HOH HOH . 
G 5 HOH B 1 302 302 HOH HOH . 
G 5 HOH B 2 305 305 HOH HOH . 
G 5 HOH B 3 306 306 HOH HOH . 
G 5 HOH B 4 308 308 HOH HOH . 
G 5 HOH B 5 309 309 HOH HOH . 
G 5 HOH B 6 310 310 HOH HOH . 
G 5 HOH B 7 313 313 HOH HOH . 
G 5 HOH B 8 315 315 HOH HOH . 
G 5 HOH B 9 317 317 HOH HOH . 
G 5 HOH B 10 318 318 HOH HOH . 
G 5 HOH B 11 323 323 HOH HOH . 
G 5 HOH B 12 324 324 HOH HOH . 
G 5 HOH B 13 326 326 HOH HOH . 
G 5 HOH B 14 327 327 HOH HOH . 
G 5 HOH B 15 329 329 HOH HOH . 
G 5 HOH B 16 330 330 HOH HOH . 
G 5 HOH B 17 333 333 HOH HOH . 
G 5 HOH B 18 336 336 HOH HOH . 
G 5 HOH B 19 338 338 HOH HOH . 
G 5 HOH B 20 340 340 HOH HOH . 
G 5 HOH B 21 341 341 HOH HOH . 
G 5 HOH B 22 342 342 HOH HOH . 
G 5 HOH B 23 345 345 HOH HOH . 
G 5 HOH B 24 346 346 HOH HOH . 
G 5 HOH B 25 347 347 HOH HOH . 
G 5 HOH B 26 349 349 HOH HOH . 
G 5 HOH B 27 351 351 HOH HOH . 
G 5 HOH B 28 353 353 HOH HOH . 
G 5 HOH B 29 356 356 HOH HOH . 
G 5 HOH B 30 359 359 HOH HOH . 
G 5 HOH B 31 360 360 HOH HOH . 
G 5 HOH B 32 361 361 HOH HOH . 
G 5 HOH B 33 362 362 HOH HOH . 
G 5 HOH B 34 367 367 HOH HOH . 
G 5 HOH B 35 368 368 HOH HOH . 
G 5 HOH B 36 369 369 HOH HOH . 
G 5 HOH B 37 370 370 HOH HOH . 
G 5 HOH B 38 371 371 HOH HOH . 
G 5 HOH B 39 376 376 HOH HOH . 
G 5 HOH B 40 379 379 HOH HOH . 
G 5 HOH B 41 381 381 HOH HOH . 
G 5 HOH B 42 383 383 HOH HOH . 
G 5 HOH B 43 384 384 HOH HOH . 
G 5 HOH B 44 387 387 HOH HOH . 
G 5 HOH B 45 390 390 HOH HOH . 
G 5 HOH B 46 394 394 HOH HOH . 
G 5 HOH B 47 400 400 HOH HOH . 
G 5 HOH B 48 401 401 HOH HOH . 
G 5 HOH B 49 403 403 HOH HOH . 
G 5 HOH B 50 404 404 HOH HOH . 
G 5 HOH B 51 405 405 HOH HOH . 
G 5 HOH B 52 407 407 HOH HOH . 
G 5 HOH B 53 409 409 HOH HOH . 
G 5 HOH B 54 410 410 HOH HOH . 
G 5 HOH B 55 413 413 HOH HOH . 
G 5 HOH B 56 414 414 HOH HOH . 
G 5 HOH B 57 418 418 HOH HOH . 
G 5 HOH B 58 420 420 HOH HOH . 
G 5 HOH B 59 421 421 HOH HOH . 
G 5 HOH B 60 422 422 HOH HOH . 
G 5 HOH B 61 425 425 HOH HOH . 
G 5 HOH B 62 426 426 HOH HOH . 
G 5 HOH B 63 428 428 HOH HOH . 
G 5 HOH B 64 430 430 HOH HOH . 
G 5 HOH B 65 431 431 HOH HOH . 
G 5 HOH B 66 436 436 HOH HOH . 
G 5 HOH B 67 437 437 HOH HOH . 
G 5 HOH B 68 439 439 HOH HOH . 
G 5 HOH B 69 440 440 HOH HOH . 
G 5 HOH B 70 441 441 HOH HOH . 
G 5 HOH B 71 442 442 HOH HOH . 
G 5 HOH B 72 445 445 HOH HOH . 
G 5 HOH B 73 453 453 HOH HOH . 
G 5 HOH B 74 456 456 HOH HOH . 
G 5 HOH B 75 457 457 HOH HOH . 
G 5 HOH B 76 459 459 HOH HOH . 
G 5 HOH B 77 460 460 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -10.303 
_atom_site.Cartn_y               18.553 
_atom_site.Cartn_z               -14.091 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.44 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#