data_1ZQQ # _model_server_result.job_id KtC0oBf8ayZ-fRBu2BdaUw _model_server_result.datetime_utc '2024-11-28 12:20:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":342}' # _entry.id 1ZQQ # _exptl.entry_id 1ZQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZQQ _cell.length_a 180.065 _cell.length_b 57.369 _cell.length_c 47.788 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DT 6 P DT 6 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc2 B O3' DG 7 P DG 7 1_555 D MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 C O LEU 62 A LEU 62 1_555 F NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc4 C O THR 101 A THR 101 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 C O VAL 103 A VAL 103 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc6 C O ILE 106 A ILE 106 1_555 E NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc7 C OD1 ASN 133 A ASN 133 1_555 G MN MN . A MN 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc8 C OD2 ASP 190 A ASP 190 1_555 D MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc9 C OD2 ASP 192 A ASP 192 1_555 D MN MN . A MN 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? hydrog 'DC-DG PAIR' hydrog1 A O2 DC 1 T DC 1 1_555 B N2 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N1 DA 2 T DA 2 1_555 B N3 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N6 DA 2 T DA 2 1_555 B O4 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 T DT 3 1_555 B N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 T DT 3 1_555 B N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 4 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 4 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DA 5 T DA 5 1_555 B N3 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N6 DA 5 T DA 5 1_555 B O4 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog10 A N1 DG 6 T DG 6 1_555 B N3 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 7 T DA 7 1_555 B N3 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 7 T DA 7 1_555 B O4 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZQQ _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017431 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020926 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 340 340 MN MN . E 5 NA A 1 341 341 NA NA . F 5 NA A 1 342 342 NA NA . G 4 MN A 1 343 343 MN MN . H 6 HOH T 1 512 512 HOH HOH . H 6 HOH T 2 517 517 HOH HOH . H 6 HOH T 3 526 526 HOH HOH . H 6 HOH T 4 527 527 HOH HOH . H 6 HOH T 5 534 534 HOH HOH . H 6 HOH T 6 536 536 HOH HOH . H 6 HOH T 7 543 543 HOH HOH . H 6 HOH T 8 544 544 HOH HOH . H 6 HOH T 9 545 545 HOH HOH . H 6 HOH T 10 558 558 HOH HOH . H 6 HOH T 11 582 582 HOH HOH . H 6 HOH T 12 584 584 HOH HOH . H 6 HOH T 13 603 603 HOH HOH . H 6 HOH T 14 616 616 HOH HOH . H 6 HOH T 15 633 633 HOH HOH . H 6 HOH T 16 645 645 HOH HOH . I 6 HOH P 1 510 510 HOH HOH . I 6 HOH P 2 511 511 HOH HOH . I 6 HOH P 3 524 524 HOH HOH . I 6 HOH P 4 525 525 HOH HOH . I 6 HOH P 5 533 533 HOH HOH . I 6 HOH P 6 559 559 HOH HOH . I 6 HOH P 7 560 560 HOH HOH . I 6 HOH P 8 561 561 HOH HOH . I 6 HOH P 9 562 562 HOH HOH . I 6 HOH P 10 563 563 HOH HOH . I 6 HOH P 11 564 564 HOH HOH . I 6 HOH P 12 565 565 HOH HOH . I 6 HOH P 13 583 583 HOH HOH . I 6 HOH P 14 586 586 HOH HOH . I 6 HOH P 15 598 598 HOH HOH . I 6 HOH P 16 599 599 HOH HOH . I 6 HOH P 17 600 600 HOH HOH . I 6 HOH P 18 601 601 HOH HOH . I 6 HOH P 19 617 617 HOH HOH . I 6 HOH P 20 630 630 HOH HOH . I 6 HOH P 21 641 641 HOH HOH . I 6 HOH P 22 646 646 HOH HOH . J 6 HOH A 1 501 501 HOH HOH . J 6 HOH A 2 502 502 HOH HOH . J 6 HOH A 3 503 503 HOH HOH . J 6 HOH A 4 505 505 HOH HOH . J 6 HOH A 5 506 506 HOH HOH . J 6 HOH A 6 507 507 HOH HOH . J 6 HOH A 7 508 508 HOH HOH . J 6 HOH A 8 509 509 HOH HOH . J 6 HOH A 9 513 513 HOH HOH . J 6 HOH A 10 514 514 HOH HOH . J 6 HOH A 11 515 515 HOH HOH . J 6 HOH A 12 516 516 HOH HOH . J 6 HOH A 13 518 518 HOH HOH . J 6 HOH A 14 519 519 HOH HOH . J 6 HOH A 15 520 520 HOH HOH . J 6 HOH A 16 521 521 HOH HOH . J 6 HOH A 17 522 522 HOH HOH . J 6 HOH A 18 523 523 HOH HOH . J 6 HOH A 19 528 528 HOH HOH . J 6 HOH A 20 529 529 HOH HOH . J 6 HOH A 21 530 530 HOH HOH . J 6 HOH A 22 531 531 HOH HOH . J 6 HOH A 23 532 532 HOH HOH . J 6 HOH A 24 535 535 HOH HOH . J 6 HOH A 25 537 537 HOH HOH . J 6 HOH A 26 539 539 HOH HOH . J 6 HOH A 27 540 540 HOH HOH . J 6 HOH A 28 541 541 HOH HOH . J 6 HOH A 29 542 542 HOH HOH . J 6 HOH A 30 546 546 HOH HOH . J 6 HOH A 31 547 547 HOH HOH . J 6 HOH A 32 548 548 HOH HOH . J 6 HOH A 33 549 549 HOH HOH . J 6 HOH A 34 550 550 HOH HOH . J 6 HOH A 35 551 551 HOH HOH . J 6 HOH A 36 552 552 HOH HOH . J 6 HOH A 37 553 553 HOH HOH . J 6 HOH A 38 554 554 HOH HOH . J 6 HOH A 39 555 555 HOH HOH . J 6 HOH A 40 556 556 HOH HOH . J 6 HOH A 41 557 557 HOH HOH . J 6 HOH A 42 566 566 HOH HOH . J 6 HOH A 43 567 567 HOH HOH . J 6 HOH A 44 568 568 HOH HOH . J 6 HOH A 45 569 569 HOH HOH . J 6 HOH A 46 570 570 HOH HOH . J 6 HOH A 47 571 571 HOH HOH . J 6 HOH A 48 572 572 HOH HOH . J 6 HOH A 49 573 573 HOH HOH . J 6 HOH A 50 574 574 HOH HOH . J 6 HOH A 51 575 575 HOH HOH . J 6 HOH A 52 576 576 HOH HOH . J 6 HOH A 53 577 577 HOH HOH . J 6 HOH A 54 578 578 HOH HOH . J 6 HOH A 55 579 579 HOH HOH . J 6 HOH A 56 580 580 HOH HOH . J 6 HOH A 57 581 581 HOH HOH . J 6 HOH A 58 585 585 HOH HOH . J 6 HOH A 59 587 587 HOH HOH . J 6 HOH A 60 588 588 HOH HOH . J 6 HOH A 61 589 589 HOH HOH . J 6 HOH A 62 590 590 HOH HOH . J 6 HOH A 63 591 591 HOH HOH . J 6 HOH A 64 593 593 HOH HOH . J 6 HOH A 65 594 594 HOH HOH . J 6 HOH A 66 595 595 HOH HOH . J 6 HOH A 67 596 596 HOH HOH . J 6 HOH A 68 597 597 HOH HOH . J 6 HOH A 69 602 602 HOH HOH . J 6 HOH A 70 604 604 HOH HOH . J 6 HOH A 71 606 606 HOH HOH . J 6 HOH A 72 607 607 HOH HOH . J 6 HOH A 73 608 608 HOH HOH . J 6 HOH A 74 609 609 HOH HOH . J 6 HOH A 75 610 610 HOH HOH . J 6 HOH A 76 611 611 HOH HOH . J 6 HOH A 77 612 612 HOH HOH . J 6 HOH A 78 613 613 HOH HOH . J 6 HOH A 79 614 614 HOH HOH . J 6 HOH A 80 615 615 HOH HOH . J 6 HOH A 81 618 618 HOH HOH . J 6 HOH A 82 619 619 HOH HOH . J 6 HOH A 83 620 620 HOH HOH . J 6 HOH A 84 621 621 HOH HOH . J 6 HOH A 85 622 622 HOH HOH . J 6 HOH A 86 623 623 HOH HOH . J 6 HOH A 87 624 624 HOH HOH . J 6 HOH A 88 625 625 HOH HOH . J 6 HOH A 89 626 626 HOH HOH . J 6 HOH A 90 627 627 HOH HOH . J 6 HOH A 91 628 628 HOH HOH . J 6 HOH A 92 629 629 HOH HOH . J 6 HOH A 93 631 631 HOH HOH . J 6 HOH A 94 632 632 HOH HOH . J 6 HOH A 95 635 635 HOH HOH . J 6 HOH A 96 636 636 HOH HOH . J 6 HOH A 97 637 637 HOH HOH . J 6 HOH A 98 638 638 HOH HOH . J 6 HOH A 99 639 639 HOH HOH . J 6 HOH A 100 640 640 HOH HOH . J 6 HOH A 101 642 642 HOH HOH . J 6 HOH A 102 643 643 HOH HOH . J 6 HOH A 103 644 644 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 47.24 _atom_site.Cartn_y 61.927 _atom_site.Cartn_z 51.547 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 342 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 421 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 1 #