data_1ZRH # _model_server_result.job_id Ofbj8Wx5S_ePIVkVpSs7OQ _model_server_result.datetime_utc '2025-03-05 19:42:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1ZRH # _exptl.entry_id 1ZRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZRH _cell.length_a 58.887 _cell.length_b 135.255 _cell.length_c 48.21 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZRH _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 223 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 223 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 232 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 232 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.063 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 1 n n P1 O2P A3P sing 2 n n P1 O3P A3P sing 3 n n P1 O3' A3P sing 4 n n O2P HOP2 A3P sing 5 n n O3P HOP3 A3P sing 6 n n P2 O4P A3P doub 7 n n P2 O5P A3P sing 8 n n P2 O6P A3P sing 9 n n P2 O5' A3P sing 10 n n O5P HOP5 A3P sing 11 n n O6P HOP6 A3P sing 12 n n O5' C5' A3P sing 13 n n C5' C4' A3P sing 14 n n C5' "H5'1" A3P sing 15 n n C5' "H5'2" A3P sing 16 n n C4' O4' A3P sing 17 n n C4' C3' A3P sing 18 n n C4' H4' A3P sing 19 n n O4' C1' A3P sing 20 n n C3' O3' A3P sing 21 n n C3' C2' A3P sing 22 n n C3' H3' A3P sing 23 n n C2' O2' A3P sing 24 n n C2' C1' A3P sing 25 n n C2' H2' A3P sing 26 n n O2' HO2' A3P sing 27 n n C1' N9 A3P sing 28 n n C1' H1' A3P sing 29 n n N9 C8 A3P sing 30 n y N9 C4 A3P sing 31 n y C8 N7 A3P doub 32 n y C8 H8 A3P sing 33 n n N7 C5 A3P sing 34 n y C5 C6 A3P sing 35 n y C5 C4 A3P doub 36 n y C6 N6 A3P sing 37 n n C6 N1 A3P doub 38 n y N6 HN61 A3P sing 39 n n N6 HN62 A3P sing 40 n n N1 C2 A3P sing 41 n y C2 N3 A3P doub 42 n y C2 H2 A3P sing 43 n n N3 C4 A3P sing 44 n y # _atom_sites.entry_id 1ZRH _atom_sites.fract_transf_matrix[1][1] 0.016982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3P A 1 301 301 A3P A3P . C 3 HOH A 1 302 1 HOH HOH . C 3 HOH A 2 303 2 HOH HOH . C 3 HOH A 3 304 3 HOH HOH . C 3 HOH A 4 305 4 HOH HOH . C 3 HOH A 5 306 5 HOH HOH . C 3 HOH A 6 307 6 HOH HOH . C 3 HOH A 7 308 7 HOH HOH . C 3 HOH A 8 309 8 HOH HOH . C 3 HOH A 9 310 9 HOH HOH . C 3 HOH A 10 311 10 HOH HOH . C 3 HOH A 11 312 11 HOH HOH . C 3 HOH A 12 313 12 HOH HOH . C 3 HOH A 13 314 13 HOH HOH . C 3 HOH A 14 315 14 HOH HOH . C 3 HOH A 15 316 15 HOH HOH . C 3 HOH A 16 317 16 HOH HOH . C 3 HOH A 17 318 17 HOH HOH . C 3 HOH A 18 319 18 HOH HOH . C 3 HOH A 19 320 19 HOH HOH . C 3 HOH A 20 321 20 HOH HOH . C 3 HOH A 21 322 21 HOH HOH . C 3 HOH A 22 323 22 HOH HOH . C 3 HOH A 23 324 23 HOH HOH . C 3 HOH A 24 325 24 HOH HOH . C 3 HOH A 25 326 25 HOH HOH . C 3 HOH A 26 327 26 HOH HOH . C 3 HOH A 27 328 27 HOH HOH . C 3 HOH A 28 329 28 HOH HOH . C 3 HOH A 29 330 29 HOH HOH . C 3 HOH A 30 331 30 HOH HOH . C 3 HOH A 31 332 31 HOH HOH . C 3 HOH A 32 333 32 HOH HOH . C 3 HOH A 33 334 33 HOH HOH . C 3 HOH A 34 335 34 HOH HOH . C 3 HOH A 35 336 35 HOH HOH . C 3 HOH A 36 337 36 HOH HOH . C 3 HOH A 37 338 37 HOH HOH . C 3 HOH A 38 339 38 HOH HOH . C 3 HOH A 39 340 39 HOH HOH . C 3 HOH A 40 341 40 HOH HOH . C 3 HOH A 41 342 41 HOH HOH . C 3 HOH A 42 343 42 HOH HOH . C 3 HOH A 43 344 43 HOH HOH . C 3 HOH A 44 345 44 HOH HOH . C 3 HOH A 45 346 45 HOH HOH . C 3 HOH A 46 347 46 HOH HOH . C 3 HOH A 47 348 47 HOH HOH . C 3 HOH A 48 349 48 HOH HOH . C 3 HOH A 49 350 49 HOH HOH . C 3 HOH A 50 351 50 HOH HOH . C 3 HOH A 51 352 51 HOH HOH . C 3 HOH A 52 353 52 HOH HOH . C 3 HOH A 53 354 53 HOH HOH . C 3 HOH A 54 355 54 HOH HOH . C 3 HOH A 55 356 55 HOH HOH . C 3 HOH A 56 357 56 HOH HOH . C 3 HOH A 57 358 57 HOH HOH . C 3 HOH A 58 359 58 HOH HOH . C 3 HOH A 59 360 59 HOH HOH . C 3 HOH A 60 361 60 HOH HOH . C 3 HOH A 61 362 61 HOH HOH . C 3 HOH A 62 363 62 HOH HOH . C 3 HOH A 63 364 63 HOH HOH . C 3 HOH A 64 365 64 HOH HOH . C 3 HOH A 65 366 65 HOH HOH . C 3 HOH A 66 367 66 HOH HOH . C 3 HOH A 67 368 67 HOH HOH . C 3 HOH A 68 369 68 HOH HOH . C 3 HOH A 69 370 69 HOH HOH . C 3 HOH A 70 371 70 HOH HOH . C 3 HOH A 71 372 71 HOH HOH . C 3 HOH A 72 373 72 HOH HOH . C 3 HOH A 73 374 73 HOH HOH . C 3 HOH A 74 375 74 HOH HOH . C 3 HOH A 75 376 75 HOH HOH . C 3 HOH A 76 377 76 HOH HOH . C 3 HOH A 77 378 77 HOH HOH . C 3 HOH A 78 379 78 HOH HOH . C 3 HOH A 79 380 79 HOH HOH . C 3 HOH A 80 381 80 HOH HOH . C 3 HOH A 81 382 81 HOH HOH . C 3 HOH A 82 383 82 HOH HOH . C 3 HOH A 83 384 83 HOH HOH . C 3 HOH A 84 385 84 HOH HOH . C 3 HOH A 85 386 85 HOH HOH . C 3 HOH A 86 387 86 HOH HOH . C 3 HOH A 87 388 87 HOH HOH . C 3 HOH A 88 389 88 HOH HOH . C 3 HOH A 89 390 90 HOH HOH . C 3 HOH A 90 391 91 HOH HOH . C 3 HOH A 91 392 92 HOH HOH . C 3 HOH A 92 393 93 HOH HOH . C 3 HOH A 93 394 94 HOH HOH . C 3 HOH A 94 395 95 HOH HOH . C 3 HOH A 95 396 96 HOH HOH . C 3 HOH A 96 397 97 HOH HOH . C 3 HOH A 97 398 98 HOH HOH . C 3 HOH A 98 399 99 HOH HOH . C 3 HOH A 99 400 100 HOH HOH . C 3 HOH A 100 401 101 HOH HOH . C 3 HOH A 101 402 102 HOH HOH . C 3 HOH A 102 403 103 HOH HOH . C 3 HOH A 103 404 104 HOH HOH . C 3 HOH A 104 405 105 HOH HOH . C 3 HOH A 105 406 106 HOH HOH . C 3 HOH A 106 407 107 HOH HOH . C 3 HOH A 107 408 108 HOH HOH . C 3 HOH A 108 409 109 HOH HOH . C 3 HOH A 109 410 110 HOH HOH . C 3 HOH A 110 411 111 HOH HOH . C 3 HOH A 111 412 112 HOH HOH . C 3 HOH A 112 413 113 HOH HOH . C 3 HOH A 113 414 114 HOH HOH . C 3 HOH A 114 415 115 HOH HOH . C 3 HOH A 115 416 116 HOH HOH . C 3 HOH A 116 417 117 HOH HOH . C 3 HOH A 117 418 119 HOH HOH . C 3 HOH A 118 419 120 HOH HOH . C 3 HOH A 119 420 121 HOH HOH . C 3 HOH A 120 421 122 HOH HOH . C 3 HOH A 121 422 123 HOH HOH . C 3 HOH A 122 423 124 HOH HOH . C 3 HOH A 123 424 125 HOH HOH . C 3 HOH A 124 425 126 HOH HOH . C 3 HOH A 125 426 127 HOH HOH . C 3 HOH A 126 427 128 HOH HOH . C 3 HOH A 127 428 129 HOH HOH . C 3 HOH A 128 429 130 HOH HOH . C 3 HOH A 129 430 131 HOH HOH . C 3 HOH A 130 431 132 HOH HOH . C 3 HOH A 131 432 133 HOH HOH . C 3 HOH A 132 433 134 HOH HOH . C 3 HOH A 133 434 135 HOH HOH . C 3 HOH A 134 435 136 HOH HOH . C 3 HOH A 135 436 137 HOH HOH . C 3 HOH A 136 437 138 HOH HOH . C 3 HOH A 137 438 139 HOH HOH . C 3 HOH A 138 439 140 HOH HOH . C 3 HOH A 139 440 141 HOH HOH . C 3 HOH A 140 441 142 HOH HOH . C 3 HOH A 141 442 143 HOH HOH . C 3 HOH A 142 443 144 HOH HOH . C 3 HOH A 143 444 145 HOH HOH . C 3 HOH A 144 445 146 HOH HOH . C 3 HOH A 145 446 147 HOH HOH . C 3 HOH A 146 447 148 HOH HOH . C 3 HOH A 147 448 149 HOH HOH . C 3 HOH A 148 449 150 HOH HOH . C 3 HOH A 149 450 151 HOH HOH . C 3 HOH A 150 451 152 HOH HOH . C 3 HOH A 151 452 153 HOH HOH . C 3 HOH A 152 453 154 HOH HOH . C 3 HOH A 153 454 155 HOH HOH . C 3 HOH A 154 455 156 HOH HOH . C 3 HOH A 155 456 157 HOH HOH . C 3 HOH A 156 457 158 HOH HOH . C 3 HOH A 157 458 159 HOH HOH . C 3 HOH A 158 459 160 HOH HOH . C 3 HOH A 159 460 161 HOH HOH . C 3 HOH A 160 461 162 HOH HOH . C 3 HOH A 161 462 163 HOH HOH . C 3 HOH A 162 463 164 HOH HOH . C 3 HOH A 163 464 165 HOH HOH . C 3 HOH A 164 465 166 HOH HOH . C 3 HOH A 165 466 167 HOH HOH . C 3 HOH A 166 467 168 HOH HOH . C 3 HOH A 167 468 169 HOH HOH . C 3 HOH A 168 469 170 HOH HOH . C 3 HOH A 169 470 171 HOH HOH . C 3 HOH A 170 471 172 HOH HOH . C 3 HOH A 171 472 173 HOH HOH . C 3 HOH A 172 473 174 HOH HOH . C 3 HOH A 173 474 175 HOH HOH . C 3 HOH A 174 475 176 HOH HOH . C 3 HOH A 175 476 177 HOH HOH . C 3 HOH A 176 477 178 HOH HOH . C 3 HOH A 177 478 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . B 2 10.922 27.25 15.055 1 21.02 ? P1 A3P 301 A 1 HETATM 2 O O1P A3P . . . B 2 10.962 28.672 14.453 1 25.5 ? O1P A3P 301 A 1 HETATM 3 O O2P A3P . . . B 2 12.137 26.576 15.451 1 20.31 ? O2P A3P 301 A 1 HETATM 4 O O3P A3P . . . B 2 9.763 27.141 16.032 1 21.07 ? O3P A3P 301 A 1 HETATM 5 P P2 A3P . . . B 2 11.806 22.982 9.459 1 17.48 ? P2 A3P 301 A 1 HETATM 6 O O4P A3P . . . B 2 11.198 22.964 8.092 1 14.97 ? O4P A3P 301 A 1 HETATM 7 O O5P A3P . . . B 2 11.757 21.632 10.101 1 17.49 ? O5P A3P 301 A 1 HETATM 8 O O6P A3P . . . B 2 13.181 23.607 9.567 1 17.95 ? O6P A3P 301 A 1 HETATM 9 O O5' A3P . . . B 2 10.803 23.86 10.342 1 16.64 ? O5' A3P 301 A 1 HETATM 10 C C5' A3P . . . B 2 11.085 24.127 11.716 1 14.67 ? C5' A3P 301 A 1 HETATM 11 C C4' A3P . . . B 2 9.795 24.559 12.403 1 14.15 ? C4' A3P 301 A 1 HETATM 12 O O4' A3P . . . B 2 8.921 23.44 12.573 1 16.73 ? O4' A3P 301 A 1 HETATM 13 C C3' A3P . . . B 2 9.963 25.035 13.859 1 15.74 ? C3' A3P 301 A 1 HETATM 14 O O3' A3P . . . B 2 10.414 26.363 13.796 1 18.35 ? O3' A3P 301 A 1 HETATM 15 C C2' A3P . . . B 2 8.545 24.862 14.443 1 18.62 ? C2' A3P 301 A 1 HETATM 16 O O2' A3P . . . B 2 7.789 26.077 14.58 1 14.08 ? O2' A3P 301 A 1 HETATM 17 C C1' A3P . . . B 2 7.849 23.944 13.402 1 16.37 ? C1' A3P 301 A 1 HETATM 18 N N9 A3P . . . B 2 7.175 22.798 14.051 1 17.3 ? N9 A3P 301 A 1 HETATM 19 C C8 A3P . . . B 2 5.951 22.344 13.716 1 17.08 ? C8 A3P 301 A 1 HETATM 20 N N7 A3P . . . B 2 5.606 21.301 14.493 1 18.46 ? N7 A3P 301 A 1 HETATM 21 C C5 A3P . . . B 2 6.644 21.048 15.333 1 15.7 ? C5 A3P 301 A 1 HETATM 22 C C6 A3P . . . B 2 6.914 20.089 16.408 1 15.25 ? C6 A3P 301 A 1 HETATM 23 N N6 A3P . . . B 2 6.007 19.133 16.73 1 14.98 ? N6 A3P 301 A 1 HETATM 24 N N1 A3P . . . B 2 8.104 20.177 17.031 1 17.18 ? N1 A3P 301 A 1 HETATM 25 C C2 A3P . . . B 2 9.026 21.12 16.74 1 17.1 ? C2 A3P 301 A 1 HETATM 26 N N3 A3P . . . B 2 8.836 22.03 15.782 1 14.88 ? N3 A3P 301 A 1 HETATM 27 C C4 A3P . . . B 2 7.682 22.04 15.048 1 16.63 ? C4 A3P 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #