data_1ZRK
#
_model_server_result.job_id            Qyv1-CaT-ytoa0TEfDCAgA 
_model_server_result.datetime_utc      '2025-01-15 02:44:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zrk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":900}' 
#
_entry.id    1ZRK 
#
_exptl.entry_id    1ZRK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.474 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-HYDROXYPROPYL 3-[({7-[AMINO(IMINO)METHYL]-1-NAPHTHYL}AMINO)CARBONYL]BENZENESULFONATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZRK 
_cell.length_a            120.899 
_cell.length_b            120.899 
_cell.length_c            120.899 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZRK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 40 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
#
_chem_comp.formula           'C21 H21 N3 O5 S' 
_chem_comp.formula_weight    427.474 
_chem_comp.id                367 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-HYDROXYPROPYL 3-[({7-[AMINO(IMINO)METHYL]-1-NAPHTHYL}AMINO)CARBONYL]BENZENESULFONATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 367 doub 1 n y 
C01 C06 367 sing 2 n y 
C01 C10 367 sing 3 n y 
C02 C03 367 sing 4 n y 
C02 N20 367 sing 5 n n 
C03 C04 367 doub 6 n y 
C03 H03 367 sing 7 n n 
C04 C05 367 sing 8 n y 
C04 H04 367 sing 9 n n 
C05 C06 367 doub 10 n y 
C05 H05 367 sing 11 n n 
C06 C13 367 sing 12 n y 
C10 C11 367 doub 13 n y 
C10 H10 367 sing 14 n n 
C11 C14 367 sing 15 n y 
C11 C17 367 sing 16 n n 
C13 C14 367 doub 17 n y 
C13 H13 367 sing 18 n n 
C14 H14 367 sing 19 n n 
C17 N18 367 doub 20 z n 
C17 N19 367 sing 21 n n 
N18 H18 367 sing 22 n n 
N19 H191 367 sing 23 n n 
N19 H192 367 sing 24 n n 
N20 C21 367 sing 25 n n 
N20 H20 367 sing 26 n n 
C21 O22 367 doub 27 n n 
C21 C27 367 sing 28 n n 
C27 C28 367 doub 29 n y 
C27 C32 367 sing 30 n y 
C28 C29 367 sing 31 n y 
C28 H28 367 sing 32 n n 
C29 C30 367 doub 33 n y 
C29 H29 367 sing 34 n n 
C30 C31 367 sing 35 n y 
C30 H30 367 sing 36 n n 
C31 C32 367 doub 37 n y 
C31 S36 367 sing 38 n n 
C32 H32 367 sing 39 n n 
S36 O38 367 sing 40 n n 
S36 O42 367 doub 41 n n 
S36 O43 367 doub 42 n n 
O38 C44 367 sing 43 n n 
C44 C45 367 sing 44 n n 
C44 H441 367 sing 45 n n 
C44 H442 367 sing 46 n n 
C45 C46 367 sing 47 n n 
C45 H451 367 sing 48 n n 
C45 H452 367 sing 49 n n 
C46 O47 367 sing 50 n n 
C46 H461 367 sing 51 n n 
C46 H462 367 sing 52 n n 
O47 H47 367 sing 53 n n 
#
_atom_sites.entry_id                     1ZRK 
_atom_sites.fract_transf_matrix[1][1]    0.008271 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008271 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 246 1 SO4 SO4 . 
C 2 SO4 A 1 247 2 SO4 SO4 . 
D 2 SO4 A 1 248 3 SO4 SO4 . 
E 3 367 A 1 900 900 367 368 . 
F 4 HOH A 1 901 1 HOH WAT . 
F 4 HOH A 2 902 2 HOH WAT . 
F 4 HOH A 3 903 3 HOH WAT . 
F 4 HOH A 4 904 4 HOH WAT . 
F 4 HOH A 5 905 5 HOH WAT . 
F 4 HOH A 6 906 6 HOH WAT . 
F 4 HOH A 7 907 7 HOH WAT . 
F 4 HOH A 8 908 8 HOH WAT . 
F 4 HOH A 9 909 9 HOH WAT . 
F 4 HOH A 10 910 10 HOH WAT . 
F 4 HOH A 11 911 11 HOH WAT . 
F 4 HOH A 12 912 13 HOH WAT . 
F 4 HOH A 13 913 14 HOH WAT . 
F 4 HOH A 14 914 15 HOH WAT . 
F 4 HOH A 15 915 16 HOH WAT . 
F 4 HOH A 16 916 17 HOH WAT . 
F 4 HOH A 17 917 18 HOH WAT . 
F 4 HOH A 18 918 19 HOH WAT . 
F 4 HOH A 19 919 20 HOH WAT . 
F 4 HOH A 20 920 21 HOH WAT . 
F 4 HOH A 21 921 22 HOH WAT . 
F 4 HOH A 22 922 23 HOH WAT . 
F 4 HOH A 23 923 24 HOH WAT . 
F 4 HOH A 24 924 25 HOH WAT . 
F 4 HOH A 25 925 26 HOH WAT . 
F 4 HOH A 26 926 27 HOH WAT . 
F 4 HOH A 27 927 28 HOH WAT . 
F 4 HOH A 28 928 29 HOH WAT . 
F 4 HOH A 29 929 30 HOH WAT . 
F 4 HOH A 30 930 31 HOH WAT . 
F 4 HOH A 31 931 32 HOH WAT . 
F 4 HOH A 32 932 33 HOH WAT . 
F 4 HOH A 33 933 34 HOH WAT . 
F 4 HOH A 34 934 35 HOH WAT . 
F 4 HOH A 35 935 36 HOH WAT . 
F 4 HOH A 36 936 37 HOH WAT . 
F 4 HOH A 37 937 38 HOH WAT . 
F 4 HOH A 38 938 39 HOH WAT . 
F 4 HOH A 39 939 40 HOH WAT . 
F 4 HOH A 40 940 41 HOH WAT . 
F 4 HOH A 41 941 42 HOH WAT . 
F 4 HOH A 42 942 43 HOH WAT . 
F 4 HOH A 43 943 44 HOH WAT . 
F 4 HOH A 44 944 45 HOH WAT . 
F 4 HOH A 45 945 46 HOH WAT . 
F 4 HOH A 46 946 47 HOH WAT . 
F 4 HOH A 47 947 48 HOH WAT . 
F 4 HOH A 48 948 49 HOH WAT . 
F 4 HOH A 49 949 50 HOH WAT . 
F 4 HOH A 50 950 51 HOH WAT . 
F 4 HOH A 51 951 52 HOH WAT . 
F 4 HOH A 52 952 53 HOH WAT . 
F 4 HOH A 53 953 54 HOH WAT . 
F 4 HOH A 54 954 55 HOH WAT . 
F 4 HOH A 55 955 56 HOH WAT . 
F 4 HOH A 56 956 57 HOH WAT . 
F 4 HOH A 57 957 58 HOH WAT . 
F 4 HOH A 58 958 59 HOH WAT . 
F 4 HOH A 59 959 60 HOH WAT . 
F 4 HOH A 60 960 61 HOH WAT . 
F 4 HOH A 61 961 62 HOH WAT . 
F 4 HOH A 62 962 63 HOH WAT . 
F 4 HOH A 63 963 64 HOH WAT . 
F 4 HOH A 64 964 65 HOH WAT . 
F 4 HOH A 65 965 66 HOH WAT . 
F 4 HOH A 66 966 67 HOH WAT . 
F 4 HOH A 67 967 68 HOH WAT . 
F 4 HOH A 68 968 69 HOH WAT . 
F 4 HOH A 69 969 70 HOH WAT . 
F 4 HOH A 70 970 71 HOH WAT . 
F 4 HOH A 71 971 72 HOH WAT . 
F 4 HOH A 72 972 73 HOH WAT . 
F 4 HOH A 73 973 74 HOH WAT . 
F 4 HOH A 74 974 75 HOH WAT . 
F 4 HOH A 75 975 76 HOH WAT . 
F 4 HOH A 76 976 77 HOH WAT . 
F 4 HOH A 77 977 78 HOH WAT . 
F 4 HOH A 78 978 79 HOH WAT . 
F 4 HOH A 79 979 80 HOH WAT . 
F 4 HOH A 80 980 81 HOH WAT . 
F 4 HOH A 81 981 82 HOH WAT . 
F 4 HOH A 82 982 83 HOH WAT . 
F 4 HOH A 83 983 84 HOH WAT . 
F 4 HOH A 84 984 85 HOH WAT . 
F 4 HOH A 85 985 86 HOH WAT . 
F 4 HOH A 86 986 87 HOH WAT . 
F 4 HOH A 87 987 88 HOH WAT . 
F 4 HOH A 88 988 89 HOH WAT . 
F 4 HOH A 89 989 90 HOH WAT . 
F 4 HOH A 90 990 91 HOH WAT . 
F 4 HOH A 91 991 92 HOH WAT . 
F 4 HOH A 92 992 93 HOH WAT . 
F 4 HOH A 93 993 94 HOH WAT . 
F 4 HOH A 94 994 95 HOH WAT . 
F 4 HOH A 95 995 96 HOH WAT . 
F 4 HOH A 96 996 97 HOH WAT . 
F 4 HOH A 97 997 98 HOH WAT . 
F 4 HOH A 98 998 99 HOH WAT . 
F 4 HOH A 99 999 100 HOH WAT . 
F 4 HOH A 100 1000 101 HOH WAT . 
F 4 HOH A 101 1001 102 HOH WAT . 
F 4 HOH A 102 1002 103 HOH WAT . 
F 4 HOH A 103 1003 105 HOH WAT . 
F 4 HOH A 104 1004 106 HOH WAT . 
F 4 HOH A 105 1005 107 HOH WAT . 
F 4 HOH A 106 1006 108 HOH WAT . 
F 4 HOH A 107 1007 110 HOH WAT . 
F 4 HOH A 108 1008 111 HOH WAT . 
F 4 HOH A 109 1009 112 HOH WAT . 
F 4 HOH A 110 1010 113 HOH WAT . 
F 4 HOH A 111 1011 114 HOH WAT . 
F 4 HOH A 112 1012 115 HOH WAT . 
F 4 HOH A 113 1013 116 HOH WAT . 
F 4 HOH A 114 1014 117 HOH WAT . 
F 4 HOH A 115 1015 118 HOH WAT . 
F 4 HOH A 116 1016 119 HOH WAT . 
F 4 HOH A 117 1017 120 HOH WAT . 
F 4 HOH A 118 1018 121 HOH WAT . 
F 4 HOH A 119 1019 122 HOH WAT . 
F 4 HOH A 120 1020 123 HOH WAT . 
F 4 HOH A 121 1021 124 HOH WAT . 
F 4 HOH A 122 1022 125 HOH WAT . 
F 4 HOH A 123 1023 126 HOH WAT . 
F 4 HOH A 124 1024 127 HOH WAT . 
F 4 HOH A 125 1025 128 HOH WAT . 
F 4 HOH A 126 1026 129 HOH WAT . 
F 4 HOH A 127 1027 130 HOH WAT . 
F 4 HOH A 128 1028 131 HOH WAT . 
F 4 HOH A 129 1029 132 HOH WAT . 
F 4 HOH A 130 1030 133 HOH WAT . 
F 4 HOH A 131 1031 134 HOH WAT . 
F 4 HOH A 132 1032 136 HOH WAT . 
F 4 HOH A 133 1033 137 HOH WAT . 
F 4 HOH A 134 1034 139 HOH WAT . 
F 4 HOH A 135 1035 140 HOH WAT . 
F 4 HOH A 136 1036 141 HOH WAT . 
F 4 HOH A 137 1037 142 HOH WAT . 
F 4 HOH A 138 1038 143 HOH WAT . 
F 4 HOH A 139 1039 144 HOH WAT . 
F 4 HOH A 140 1040 145 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 367 . . . E 3 108.262 20.506 51.248 1 31.47 ? C01 367 900 A 1 
HETATM 2 C C02 367 . . . E 3 107.736 20.163 52.524 1 33.81 ? C02 367 900 A 1 
HETATM 3 C C03 367 . . . E 3 107.478 21.205 53.488 1 33.71 ? C03 367 900 A 1 
HETATM 4 C C04 367 . . . E 3 107.745 22.564 53.198 1 31.34 ? C04 367 900 A 1 
HETATM 5 C C05 367 . . . E 3 108.275 22.902 51.929 1 30.64 ? C05 367 900 A 1 
HETATM 6 C C06 367 . . . E 3 108.531 21.894 50.954 1 29.73 ? C06 367 900 A 1 
HETATM 7 C C10 367 . . . E 3 108.539 19.524 50.245 1 28.45 ? C10 367 900 A 1 
HETATM 8 C C11 367 . . . E 3 109.065 19.896 48.976 1 27.09 ? C11 367 900 A 1 
HETATM 9 C C13 367 . . . E 3 109.054 22.252 49.691 1 28.78 ? C13 367 900 A 1 
HETATM 10 C C14 367 . . . E 3 109.319 21.273 48.71 1 27.02 ? C14 367 900 A 1 
HETATM 11 C C17 367 . . . E 3 109.351 18.865 47.96 1 25.14 ? C17 367 900 A 1 
HETATM 12 N N18 367 . . . E 3 109.339 19.061 46.701 1 24.14 ? N18 367 900 A 1 
HETATM 13 N N19 367 . . . E 3 109.665 17.606 48.244 1 22.11 ? N19 367 900 A 1 
HETATM 14 N N20 367 . . . E 3 107.483 18.851 52.869 1 37.8 ? N20 367 900 A 1 
HETATM 15 C C21 367 . . . E 3 108.06 18.039 53.907 1 40.76 ? C21 367 900 A 1 
HETATM 16 O O22 367 . . . E 3 107.662 16.914 54.089 1 39.88 ? O22 367 900 A 1 
HETATM 17 C C27 367 . . . E 3 109.133 18.604 54.777 1 42.34 ? C27 367 900 A 1 
HETATM 18 C C28 367 . . . E 3 110.453 18.829 54.269 1 43.58 ? C28 367 900 A 1 
HETATM 19 C C29 367 . . . E 3 111.431 19.402 55.119 1 45.09 ? C29 367 900 A 1 
HETATM 20 C C30 367 . . . E 3 111.082 19.753 56.46 1 44.58 ? C30 367 900 A 1 
HETATM 21 C C31 367 . . . E 3 109.778 19.534 56.985 1 46.7 ? C31 367 900 A 1 
HETATM 22 C C32 367 . . . E 3 108.811 18.951 56.113 1 43.66 ? C32 367 900 A 1 
HETATM 23 S S36 367 . . . E 3 109.299 19.954 58.64 1 47.04 ? S36 367 900 A 1 
HETATM 24 O O38 367 . . . E 3 108.257 21.079 58.435 1 48.87 ? O38 367 900 A 1 
HETATM 25 O O42 367 . . . E 3 108.666 18.712 59.166 1 48.32 ? O42 367 900 A 1 
HETATM 26 O O43 367 . . . E 3 110.455 20.537 59.235 1 49.04 ? O43 367 900 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#