data_1ZRT
#
_model_server_result.job_id            zW8cqIS0spPY79OK1g0YrQ 
_model_server_result.datetime_utc      '2025-04-25 06:15:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zrt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":502}' 
#
_entry.id    1ZRT 
#
_exptl.entry_id    1ZRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              266.331 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.57 
_cell.angle_gamma         90 
_cell.entry_id            1ZRT 
_cell.length_a            95.633 
_cell.length_b            154.36 
_cell.length_c            103.057 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             T 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 144 D CYS 144 1_555 B SG CYS 167 D CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 C SG CYS 138 E CYS 138 1_555 C SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 E SG CYS 144 Q CYS 144 1_555 E SG CYS 167 Q CYS 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf4 F SG CYS 138 R CYS 138 1_555 F SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 B SG CYS 34 D CYS 34 1_555 L CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? 
covale ? covale2 B SG CYS 37 D CYS 37 1_555 L CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? 
covale ? covale3 E SG CYS 34 Q CYS 34 1_555 S CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.896 ? 
covale ? covale4 E SG CYS 37 Q CYS 37 1_555 S CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A NE2 HIS 97 C HIS 97 1_555 G FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc2 A NE2 HIS 111 C HIS 111 1_555 H FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc3 A NE2 HIS 198 C HIS 198 1_555 G FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc4 A NE2 HIS 212 C HIS 212 1_555 H FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc5 B NE2 HIS 38 D HIS 38 1_555 L FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc6 B SD MET 183 D MET 183 1_555 L FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc7 C SG CYS 133 E CYS 133 1_555 M FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc8 C ND1 HIS 135 E HIS 135 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc9 C SG CYS 153 E CYS 153 1_555 M FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc10 C N HIS 156 E HIS 156 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc11 C ND1 HIS 156 E HIS 156 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc12 D NE2 HIS 97 P HIS 97 1_555 N FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc13 D NE2 HIS 111 P HIS 111 1_555 O FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc14 D NE2 HIS 198 P HIS 198 1_555 N FE HEM . P HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
metalc ? metalc15 D NE2 HIS 212 P HIS 212 1_555 O FE HEM . P HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc16 E NE2 HIS 38 Q HIS 38 1_555 S FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? 
metalc ? metalc17 E SD MET 183 Q MET 183 1_555 S FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc18 F SG CYS 133 R CYS 133 1_555 U FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc19 F ND1 HIS 135 R HIS 135 1_555 U FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc20 F SG CYS 153 R CYS 153 1_555 U FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc21 F N HIS 156 R HIS 156 1_555 U FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc22 F ND1 HIS 156 R HIS 156 1_555 U FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
#
_chem_comp.formula           'C12 H26 O6' 
_chem_comp.formula_weight    266.331 
_chem_comp.id                PG6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PG6 sing 405 n n 
C1 H11 PG6 sing 406 n n 
C1 H12 PG6 sing 407 n n 
C1 H13 PG6 sing 408 n n 
O1 C2 PG6 sing 409 n n 
C2 C3 PG6 sing 410 n n 
C2 H21 PG6 sing 411 n n 
C2 H22 PG6 sing 412 n n 
C3 O2 PG6 sing 413 n n 
C3 H31 PG6 sing 414 n n 
C3 H32 PG6 sing 415 n n 
O2 C4 PG6 sing 416 n n 
C4 C5 PG6 sing 417 n n 
C4 H41 PG6 sing 418 n n 
C4 H42 PG6 sing 419 n n 
C5 O3 PG6 sing 420 n n 
C5 H51 PG6 sing 421 n n 
C5 H52 PG6 sing 422 n n 
O3 C6 PG6 sing 423 n n 
C6 C7 PG6 sing 424 n n 
C6 H61 PG6 sing 425 n n 
C6 H62 PG6 sing 426 n n 
C7 O4 PG6 sing 427 n n 
C7 H71 PG6 sing 428 n n 
C7 H72 PG6 sing 429 n n 
O4 C8 PG6 sing 430 n n 
C8 C9 PG6 sing 431 n n 
C8 H81 PG6 sing 432 n n 
C8 H82 PG6 sing 433 n n 
C9 O5 PG6 sing 434 n n 
C9 H91 PG6 sing 435 n n 
C9 H92 PG6 sing 436 n n 
O5 C10 PG6 sing 437 n n 
C10 C11 PG6 sing 438 n n 
C10 H101 PG6 sing 439 n n 
C10 H102 PG6 sing 440 n n 
C11 O6 PG6 sing 441 n n 
C11 H111 PG6 sing 442 n n 
C11 H112 PG6 sing 443 n n 
O6 C12 PG6 sing 444 n n 
C12 H121 PG6 sing 445 n n 
C12 H122 PG6 sing 446 n n 
C12 H123 PG6 sing 447 n n 
#
_atom_sites.entry_id                     1ZRT 
_atom_sites.fract_transf_matrix[1][1]    0.010457 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004562 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006478 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 HEM C 1 501 501 HEM HEM . 
H 4 HEM C 1 502 502 HEM HEM . 
I 5 SMA C 1 503 503 SMA SMA . 
J 6 UNL C 1 504 504 UNL UNK . 
K 6 UNL C 1 505 505 UNL UNK . 
L 7 HEC D 1 501 501 HEC HEC . 
M 8 FES E 1 501 501 FES FES . 
N 4 HEM P 1 501 501 HEM HEM . 
O 4 HEM P 1 502 502 HEM HEM . 
P 5 SMA P 1 503 503 SMA SMA . 
Q 6 UNL P 1 504 504 UNL UNK . 
R 6 UNL P 1 505 505 UNL UNK . 
S 7 HEC Q 1 501 501 HEC HEC . 
T 9 PG6 Q 1 502 502 PG6 PG6 . 
U 8 FES R 1 501 501 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PG6 . . . T 9 3.214 -28.605 19.08 1 71.11 ? C1 PG6 502 Q 1 
HETATM 2 O O1 PG6 . . . T 9 2.752 -27.379 19.675 1 106.71 ? O1 PG6 502 Q 1 
HETATM 3 C C2 PG6 . . . T 9 1.894 -27.514 20.839 1 139.13 ? C2 PG6 502 Q 1 
HETATM 4 C C3 PG6 . . . T 9 1.461 -26.218 21.526 1 137.67 ? C3 PG6 502 Q 1 
HETATM 5 O O2 PG6 . . . T 9 0.758 -26.427 22.759 1 134.39 ? O2 PG6 502 Q 1 
HETATM 6 C C4 PG6 . . . T 9 1.603 -26.707 23.881 1 131.27 ? C4 PG6 502 Q 1 
HETATM 7 C C5 PG6 . . . T 9 1.042 -26.175 25.211 1 110.55 ? C5 PG6 502 Q 1 
HETATM 8 O O3 PG6 . . . T 9 1.897 -26.54 26.304 1 114.51 ? O3 PG6 502 Q 1 
HETATM 9 C C6 PG6 . . . T 9 1.793 -25.708 27.466 1 117.65 ? C6 PG6 502 Q 1 
HETATM 10 C C7 PG6 . . . T 9 3.059 -25.697 28.368 1 99.45 ? C7 PG6 502 Q 1 
HETATM 11 O O4 PG6 . . . T 9 3.085 -24.48 29.13 1 98.24 ? O4 PG6 502 Q 1 
HETATM 12 C C8 PG6 . . . T 9 4.339 -24.097 29.701 1 105.6 ? C8 PG6 502 Q 1 
HETATM 13 C C9 PG6 . . . T 9 4.364 -22.589 30.024 1 101.55 ? C9 PG6 502 Q 1 
HETATM 14 O O5 PG6 . . . T 9 5.494 -22.263 30.843 1 116.94 ? O5 PG6 502 Q 1 
HETATM 15 C C10 PG6 . . . T 9 5.783 -20.865 30.974 1 118.78 ? C10 PG6 502 Q 1 
HETATM 16 C C11 PG6 . . . T 9 7.204 -20.661 31.53 1 128.19 ? C11 PG6 502 Q 1 
HETATM 17 O O6 PG6 . . . T 9 7.713 -19.314 31.589 1 123.63 ? O6 PG6 502 Q 1 
HETATM 18 C C12 PG6 . . . T 9 9.127 -19.195 31.671 1 104.58 ? C12 PG6 502 Q 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#