data_1ZRZ # _model_server_result.job_id yfLo42lLSQndbglnU1yzXw _model_server_result.datetime_utc '2024-10-17 03:22:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 1ZRZ # _exptl.entry_id 1ZRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.484 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZRZ _cell.length_a 78.143 _cell.length_b 78.143 _cell.length_c 112.625 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 179 A SER 402 1_555 A N TPO 180 A TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C TPO 180 A TPO 403 1_555 A N PHE 181 A PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale3 A C LEU 331 A LEU 554 1_555 A N TPO 332 A TPO 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 A C TPO 332 A TPO 555 1_555 A N PRO 333 A PRO 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C25 H24 N4 O2' _chem_comp.formula_weight 412.484 _chem_comp.id BI1 _chem_comp.mon_nstd_flag . _chem_comp.name 3-{1-[3-(DIMETHYLAMINO)PROPYL]-1H-INDOL-3-YL}-4-(1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RBT205 INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBD NBC BI1 sing 70 n n CBD HBD1 BI1 sing 71 n n CBD HBD2 BI1 sing 72 n n CBD HBD3 BI1 sing 73 n n NBC CBE BI1 sing 74 n n NBC CBB BI1 sing 75 n n CBE HBE1 BI1 sing 76 n n CBE HBE2 BI1 sing 77 n n CBE HBE3 BI1 sing 78 n n CBB CBA BI1 sing 79 n n CBB HBB1 BI1 sing 80 n n CBB HBB2 BI1 sing 81 n n CBA CAY BI1 sing 82 n n CBA HBA1 BI1 sing 83 n n CBA HBA2 BI1 sing 84 n n CAY NAH BI1 sing 85 n n CAY HAY1 BI1 sing 86 n n CAY HAY2 BI1 sing 87 n n NAH CAW BI1 sing 88 n y NAH CAE BI1 sing 89 n y CAW CAG BI1 doub 90 n y CAW HAW BI1 sing 91 n n CAE CAF BI1 sing 92 n y CAE CAD BI1 doub 93 n y CAF CAA BI1 doub 94 n y CAF HAF BI1 sing 95 n n CAA CAB BI1 sing 96 n y CAA HAA BI1 sing 97 n n CAB CAC BI1 doub 98 n y CAB HAB BI1 sing 99 n n CAC CAD BI1 sing 100 n y CAC HAC BI1 sing 101 n n CAD CAG BI1 sing 102 n y CAG CAI BI1 sing 103 n n CAI CAT BI1 sing 104 n n CAI CAJ BI1 doub 105 n n CAT OAZ BI1 doub 106 n n CAT NAU BI1 sing 107 n n NAU CAV BI1 sing 108 n n NAU HAU BI1 sing 109 n n CAV OAX BI1 doub 110 n n CAV CAJ BI1 sing 111 n n CAJ CAK BI1 sing 112 n n CAK CAM BI1 sing 113 n y CAK CAL BI1 doub 114 n y CAM CAP BI1 sing 115 n y CAM CAN BI1 doub 116 n y CAP CAQ BI1 doub 117 n y CAP HAP BI1 sing 118 n n CAQ CAR BI1 sing 119 n y CAQ HAQ BI1 sing 120 n n CAR CAS BI1 doub 121 n y CAR HAR BI1 sing 122 n n CAS CAN BI1 sing 123 n y CAS HAS BI1 sing 124 n n CAN NAO BI1 sing 125 n y NAO CAL BI1 sing 126 n y NAO HAO BI1 sing 127 n n CAL HAL BI1 sing 128 n n # _atom_sites.entry_id 1ZRZ _atom_sites.fract_transf_matrix[1][1] 0.012797 _atom_sites.fract_transf_matrix[1][2] 0.007388 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BI1 A 1 1000 1000 BI1 BI1 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBD BI1 . . . B 2 -11.245 24.787 23.067 1 71.44 ? CBD BI1 1000 A 1 HETATM 2 N NBC BI1 . . . B 2 -10.9 23.667 22.209 1 69.41 ? NBC BI1 1000 A 1 HETATM 3 C CBE BI1 . . . B 2 -10.947 22.311 22.758 1 69.1 ? CBE BI1 1000 A 1 HETATM 4 C CBB BI1 . . . B 2 -10.532 24.046 20.822 1 68.12 ? CBB BI1 1000 A 1 HETATM 5 C CBA BI1 . . . B 2 -10.197 22.853 19.929 1 66.9 ? CBA BI1 1000 A 1 HETATM 6 C CAY BI1 . . . B 2 -8.869 23.163 19.251 1 63.29 ? CAY BI1 1000 A 1 HETATM 7 N NAH BI1 . . . B 2 -8.515 22.061 18.345 1 62.19 ? NAH BI1 1000 A 1 HETATM 8 C CAW BI1 . . . B 2 -8.069 20.84 18.78 1 61.31 ? CAW BI1 1000 A 1 HETATM 9 C CAE BI1 . . . B 2 -8.585 22.096 16.993 1 60.17 ? CAE BI1 1000 A 1 HETATM 10 C CAF BI1 . . . B 2 -8.972 23.104 16.053 1 59.69 ? CAF BI1 1000 A 1 HETATM 11 C CAA BI1 . . . B 2 -8.944 22.845 14.669 1 60.21 ? CAA BI1 1000 A 1 HETATM 12 C CAB BI1 . . . B 2 -8.53 21.566 14.179 1 60.52 ? CAB BI1 1000 A 1 HETATM 13 C CAC BI1 . . . B 2 -8.139 20.541 15.095 1 59.56 ? CAC BI1 1000 A 1 HETATM 14 C CAD BI1 . . . B 2 -8.17 20.821 16.5 1 59.51 ? CAD BI1 1000 A 1 HETATM 15 C CAG BI1 . . . B 2 -7.858 20.074 17.641 1 60.05 ? CAG BI1 1000 A 1 HETATM 16 C CAI BI1 . . . B 2 -7.351 18.63 17.767 1 59.57 ? CAI BI1 1000 A 1 HETATM 17 C CAT BI1 . . . B 2 -6.298 18.007 16.925 1 60.04 ? CAT BI1 1000 A 1 HETATM 18 O OAZ BI1 . . . B 2 -5.688 18.616 15.981 1 63.91 ? OAZ BI1 1000 A 1 HETATM 19 N NAU BI1 . . . B 2 -6.013 16.728 17.225 1 59.3 ? NAU BI1 1000 A 1 HETATM 20 C CAV BI1 . . . B 2 -6.805 16.408 18.233 1 59.13 ? CAV BI1 1000 A 1 HETATM 21 O OAX BI1 . . . B 2 -6.746 15.242 18.735 1 59.19 ? OAX BI1 1000 A 1 HETATM 22 C CAJ BI1 . . . B 2 -7.711 17.511 18.685 1 59.47 ? CAJ BI1 1000 A 1 HETATM 23 C CAK BI1 . . . B 2 -8.716 17.424 19.829 1 59.62 ? CAK BI1 1000 A 1 HETATM 24 C CAM BI1 . . . B 2 -10.004 18.04 19.965 1 60.49 ? CAM BI1 1000 A 1 HETATM 25 C CAP BI1 . . . B 2 -10.812 18.905 19.148 1 60.58 ? CAP BI1 1000 A 1 HETATM 26 C CAQ BI1 . . . B 2 -12.073 19.34 19.62 1 59.56 ? CAQ BI1 1000 A 1 HETATM 27 C CAR BI1 . . . B 2 -12.51 18.908 20.896 1 60.35 ? CAR BI1 1000 A 1 HETATM 28 C CAS BI1 . . . B 2 -11.721 18.044 21.722 1 60.55 ? CAS BI1 1000 A 1 HETATM 29 C CAN BI1 . . . B 2 -10.436 17.602 21.24 1 61.04 ? CAN BI1 1000 A 1 HETATM 30 N NAO BI1 . . . B 2 -9.466 16.793 21.784 1 60.44 ? NAO BI1 1000 A 1 HETATM 31 C CAL BI1 . . . B 2 -8.402 16.66 20.959 1 59.16 ? CAL BI1 1000 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #