data_1ZT4 # _model_server_result.job_id kgIvSubFjLJ9wuiiiDqUGw _model_server_result.datetime_utc '2024-11-23 23:22:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":282}' # _entry.id 1ZT4 # _exptl.entry_id 1ZT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 858.322 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZT4 _cell.length_a 50.47 _cell.length_b 94.3 _cell.length_c 176.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA,PQS tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G 1 1 C,D,H,I 2 1 A,B,C,D,E,F,G,H,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 102 1_555 A SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 102 C CYS 102 1_555 C SG CYS 166 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 C SG CYS 206 C CYS 206 1_555 C SG CYS 261 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 D SG CYS 26 D CYS 25 1_555 D SG CYS 81 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C50 H99 N O9' _chem_comp.formula_weight 858.322 _chem_comp.id AGH _chem_comp.mon_nstd_flag . _chem_comp.name N-{(1S,2R,3S)-1-[(ALPHA-D-GALACTOPYRANOSYLOXY)METHYL]-2,3-DIHYDROXYHEPTADECYL}HEXACOSANAMIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AGH sing 1 n n C1 O1A AGH sing 2 n n C1 H11 AGH sing 3 n n C1 H12 AGH sing 4 n n C2 C3 AGH sing 5 n n C2 N2 AGH sing 6 n n C2 H2 AGH sing 7 n n C3 C4 AGH sing 8 n n C3 O3 AGH sing 9 n n C3 H5 AGH sing 10 n n C4 C5 AGH sing 11 n n C4 O4 AGH sing 12 n n C4 H6 AGH sing 13 n n C5 C6 AGH sing 14 n n C5 H51 AGH sing 15 n n C5 H52 AGH sing 16 n n C6 C7 AGH sing 17 n n C6 H61 AGH sing 18 n n C6 H62 AGH sing 19 n n O3 HO3 AGH sing 20 n n C18 C17 AGH sing 21 n n C18 H181 AGH sing 22 n n C18 H182 AGH sing 23 n n C18 H183 AGH sing 24 n n C17 C16 AGH sing 25 n n C17 H171 AGH sing 26 n n C17 H172 AGH sing 27 n n C16 C15 AGH sing 28 n n C16 H161 AGH sing 29 n n C16 H162 AGH sing 30 n n C15 C14 AGH sing 31 n n C15 H151 AGH sing 32 n n C15 H152 AGH sing 33 n n C14 C13 AGH sing 34 n n C14 H141 AGH sing 35 n n C14 H142 AGH sing 36 n n C13 C12 AGH sing 37 n n C13 H131 AGH sing 38 n n C13 H132 AGH sing 39 n n C12 C11 AGH sing 40 n n C12 H121 AGH sing 41 n n C12 H122 AGH sing 42 n n C11 C10 AGH sing 43 n n C11 H111 AGH sing 44 n n C11 H112 AGH sing 45 n n C10 C9 AGH sing 46 n n C10 H101 AGH sing 47 n n C10 H102 AGH sing 48 n n C9 C8 AGH sing 49 n n C9 H91 AGH sing 50 n n C9 H92 AGH sing 51 n n C8 C7 AGH sing 52 n n C8 H81 AGH sing 53 n n C8 H82 AGH sing 54 n n C7 H71 AGH sing 55 n n C7 H72 AGH sing 56 n n O4 HO4 AGH sing 57 n n O1A C1A AGH sing 58 n n C1A O6A AGH sing 59 n n C1A C2A AGH sing 60 n n C1A H1A AGH sing 61 n n O6A C5M AGH sing 62 n n C5M C6A AGH sing 63 n n C5M C4A AGH sing 64 n n C5M H5M AGH sing 65 n n C6A O5A AGH sing 66 n n C6A H6A1 AGH sing 67 n n C6A H6A2 AGH sing 68 n n O5A H5A AGH sing 69 n n C4A O4A AGH sing 70 n n C4A C3A AGH sing 71 n n C4A H4A AGH sing 72 n n O4A H1 AGH sing 73 n n C3A O3A AGH sing 74 n n C3A C2A AGH sing 75 n n C3A H3A AGH sing 76 n n O3A H3 AGH sing 77 n n C2A O2A AGH sing 78 n n C2A H2A AGH sing 79 n n O2A H4 AGH sing 80 n n N2 CAA AGH sing 81 n n N2 HN2 AGH sing 82 n n CAA OAA AGH doub 83 n n CAA CAB AGH sing 84 n n CAB CAC AGH sing 85 n n CAB HAB1 AGH sing 86 n n CAB HAB2 AGH sing 87 n n CAC CAD AGH sing 88 n n CAC HAC1 AGH sing 89 n n CAC HAC2 AGH sing 90 n n CAD CAE AGH sing 91 n n CAD HAD1 AGH sing 92 n n CAD HAD2 AGH sing 93 n n CAE CAF AGH sing 94 n n CAE HAE1 AGH sing 95 n n CAE HAE2 AGH sing 96 n n CAF CAG AGH sing 97 n n CAF HAF1 AGH sing 98 n n CAF HAF2 AGH sing 99 n n CAG CAH AGH sing 100 n n CAG HAG1 AGH sing 101 n n CAG HAG2 AGH sing 102 n n CAH CAI AGH sing 103 n n CAH HAH1 AGH sing 104 n n CAH HAH2 AGH sing 105 n n CAI CAJ AGH sing 106 n n CAI HAI1 AGH sing 107 n n CAI HAI2 AGH sing 108 n n CAJ CAK AGH sing 109 n n CAJ HAJ1 AGH sing 110 n n CAJ HAJ2 AGH sing 111 n n CAK CAL AGH sing 112 n n CAK HAK1 AGH sing 113 n n CAK HAK2 AGH sing 114 n n CAL CAM AGH sing 115 n n CAL HAL1 AGH sing 116 n n CAL HAL2 AGH sing 117 n n CAM CAN AGH sing 118 n n CAM HAM1 AGH sing 119 n n CAM HAM2 AGH sing 120 n n CAN CAO AGH sing 121 n n CAN HAN1 AGH sing 122 n n CAN HAN2 AGH sing 123 n n CAO CAP AGH sing 124 n n CAO HAO1 AGH sing 125 n n CAO HAO2 AGH sing 126 n n CAP CAQ AGH sing 127 n n CAP HAP1 AGH sing 128 n n CAP HAP2 AGH sing 129 n n CAQ CAR AGH sing 130 n n CAQ HAQ1 AGH sing 131 n n CAQ HAQ2 AGH sing 132 n n CAR CAS AGH sing 133 n n CAR HAR1 AGH sing 134 n n CAR HAR2 AGH sing 135 n n CAS CAT AGH sing 136 n n CAS HAS1 AGH sing 137 n n CAS HAS2 AGH sing 138 n n CAT CAU AGH sing 139 n n CAT HAT1 AGH sing 140 n n CAT HAT2 AGH sing 141 n n CAU CAV AGH sing 142 n n CAU HAU1 AGH sing 143 n n CAU HAU2 AGH sing 144 n n CAV CAW AGH sing 145 n n CAV HAV1 AGH sing 146 n n CAV HAV2 AGH sing 147 n n CAW CAX AGH sing 148 n n CAW HAW1 AGH sing 149 n n CAW HAW2 AGH sing 150 n n CAX CAY AGH sing 151 n n CAX HAX1 AGH sing 152 n n CAX HAX2 AGH sing 153 n n CAY CAZ AGH sing 154 n n CAY HAY1 AGH sing 155 n n CAY HAY2 AGH sing 156 n n CAZ HAZ1 AGH sing 157 n n CAZ HAZ2 AGH sing 158 n n CAZ HAZ3 AGH sing 159 n n # _atom_sites.entry_id 1ZT4 _atom_sites.fract_transf_matrix[1][1] 0.019814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AGH A 1 282 1 AGH AGH . F 4 HOH A 1 283 4 HOH HOH . F 4 HOH A 2 284 8 HOH HOH . F 4 HOH A 3 285 15 HOH HOH . G 4 HOH B 1 100 2 HOH HOH . G 4 HOH B 2 101 7 HOH HOH . G 4 HOH B 3 102 10 HOH HOH . G 4 HOH B 4 103 13 HOH HOH . H 4 HOH C 1 282 1 HOH HOH . H 4 HOH C 2 283 3 HOH HOH . H 4 HOH C 3 284 5 HOH HOH . H 4 HOH C 4 285 9 HOH HOH . H 4 HOH C 5 286 11 HOH HOH . H 4 HOH C 6 287 14 HOH HOH . H 4 HOH C 7 288 16 HOH HOH . H 4 HOH C 8 289 17 HOH HOH . H 4 HOH C 9 290 18 HOH HOH . I 4 HOH D 1 100 6 HOH HOH . I 4 HOH D 2 101 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AGH . . . E 3 31.046 33.581 65.816 1 20.18 ? C1 AGH 282 A 1 HETATM 2 C C2 AGH . . . E 3 32.202 33.967 64.885 1 18.6 ? C2 AGH 282 A 1 HETATM 3 C C3 AGH . . . E 3 33.415 34.482 65.667 1 25.29 ? C3 AGH 282 A 1 HETATM 4 C C4 AGH . . . E 3 34.405 35.339 64.867 1 27.37 ? C4 AGH 282 A 1 HETATM 5 C C5 AGH . . . E 3 35.17 34.564 63.795 1 24.77 ? C5 AGH 282 A 1 HETATM 6 C C6 AGH . . . E 3 36.345 35.351 63.202 1 12.1 ? C6 AGH 282 A 1 HETATM 7 O O3 AGH . . . E 3 32.949 35.268 66.765 1 33.95 ? O3 AGH 282 A 1 HETATM 8 C C18 AGH . . . E 3 43.384 44.148 65.966 1 30.58 ? C18 AGH 282 A 1 HETATM 9 C C17 AGH . . . E 3 42.985 42.705 66.28 1 24.7 ? C17 AGH 282 A 1 HETATM 10 C C16 AGH . . . E 3 43.278 41.752 65.121 1 22.68 ? C16 AGH 282 A 1 HETATM 11 C C15 AGH . . . E 3 42.644 40.391 65.416 1 17.5 ? C15 AGH 282 A 1 HETATM 12 C C14 AGH . . . E 3 42.665 39.48 64.189 1 10.66 ? C14 AGH 282 A 1 HETATM 13 C C13 AGH . . . E 3 41.899 38.195 64.497 1 1 ? C13 AGH 282 A 1 HETATM 14 C C12 AGH . . . E 3 41.019 37.799 63.314 1 1 ? C12 AGH 282 A 1 HETATM 15 C C11 AGH . . . E 3 41.613 36.62 62.541 1 3.6 ? C11 AGH 282 A 1 HETATM 16 C C10 AGH . . . E 3 40.545 36.032 61.618 1 1.6 ? C10 AGH 282 A 1 HETATM 17 C C9 AGH . . . E 3 39.3 35.605 62.397 1 4.77 ? C9 AGH 282 A 1 HETATM 18 C C8 AGH . . . E 3 38.19 35.243 61.41 1 24.32 ? C8 AGH 282 A 1 HETATM 19 C C7 AGH . . . E 3 37.016 34.538 62.092 1 23.75 ? C7 AGH 282 A 1 HETATM 20 O O4 AGH . . . E 3 33.68 36.415 64.263 1 40.7 ? O4 AGH 282 A 1 HETATM 21 O O1A AGH . . . E 3 31.467 32.594 66.769 1 24.69 ? O1A AGH 282 A 1 HETATM 22 C C1A AGH . . . E 3 30.59 32.581 67.909 1 21.91 ? C1A AGH 282 A 1 HETATM 23 O O6A AGH . . . E 3 29.219 32.329 67.539 1 13.79 ? O6A AGH 282 A 1 HETATM 24 C C5M AGH . . . E 3 29.006 31.025 66.973 1 16.92 ? C5M AGH 282 A 1 HETATM 25 C C6A AGH . . . E 3 27.568 30.864 66.482 1 29.17 ? C6A AGH 282 A 1 HETATM 26 O O5A AGH . . . E 3 27.384 31.657 65.308 1 37.12 ? O5A AGH 282 A 1 HETATM 27 C C4A AGH . . . E 3 29.362 29.941 67.992 1 13.36 ? C4A AGH 282 A 1 HETATM 28 O O4A AGH . . . E 3 28.538 30.08 69.151 1 17.93 ? O4A AGH 282 A 1 HETATM 29 C C3A AGH . . . E 3 30.834 30.112 68.374 1 18.12 ? C3A AGH 282 A 1 HETATM 30 O O3A AGH . . . E 3 31.206 29.155 69.368 1 29.75 ? O3A AGH 282 A 1 HETATM 31 C C2A AGH . . . E 3 31.076 31.526 68.907 1 20.1 ? C2A AGH 282 A 1 HETATM 32 O O2A AGH . . . E 3 32.465 31.721 69.182 1 23.86 ? O2A AGH 282 A 1 HETATM 33 N N2 AGH . . . E 3 32.573 32.832 64.031 1 11.66 ? N2 AGH 282 A 1 HETATM 34 C CAA AGH . . . E 3 32.24 32.76 62.74 1 10.36 ? CAA AGH 282 A 1 HETATM 35 O OAA AGH . . . E 3 31.553 33.599 62.173 1 15.75 ? OAA AGH 282 A 1 HETATM 36 C CAB AGH . . . E 3 32.728 31.5 62.018 1 15.98 ? CAB AGH 282 A 1 HETATM 37 C CAC AGH . . . E 3 32.38 31.488 60.528 1 20.94 ? CAC AGH 282 A 1 HETATM 38 C CAD AGH . . . E 3 33.297 32.373 59.68 1 31.02 ? CAD AGH 282 A 1 HETATM 39 C CAE AGH . . . E 3 32.818 32.354 58.227 1 31.67 ? CAE AGH 282 A 1 HETATM 40 C CAF AGH . . . E 3 33.959 32.419 57.211 1 31.93 ? CAF AGH 282 A 1 HETATM 41 C CAG AGH . . . E 3 34.339 33.851 56.83 1 29.76 ? CAG AGH 282 A 1 HETATM 42 C CAH AGH . . . E 3 35.343 33.868 55.676 1 25.11 ? CAH AGH 282 A 1 HETATM 43 C CAI AGH . . . E 3 35.367 35.253 55.028 1 21.53 ? CAI AGH 282 A 1 HETATM 44 C CAJ AGH . . . E 3 36.097 35.237 53.683 1 1.06 ? CAJ AGH 282 A 1 HETATM 45 C CAK AGH . . . E 3 36.182 36.645 53.088 1 1 ? CAK AGH 282 A 1 HETATM 46 C CAL AGH . . . E 3 34.884 37.122 52.429 1 10.16 ? CAL AGH 282 A 1 HETATM 47 C CAM AGH . . . E 3 34.752 36.555 51.014 1 20.47 ? CAM AGH 282 A 1 HETATM 48 C CAN AGH . . . E 3 33.655 37.259 50.211 1 12.68 ? CAN AGH 282 A 1 HETATM 49 C CAO AGH . . . E 3 32.444 36.349 50.017 1 13.65 ? CAO AGH 282 A 1 HETATM 50 C CAP AGH . . . E 3 32.019 36.406 48.548 1 12.04 ? CAP AGH 282 A 1 HETATM 51 C CAQ AGH . . . E 3 31.415 35.085 48.068 1 21.34 ? CAQ AGH 282 A 1 HETATM 52 C CAR AGH . . . E 3 32.332 33.912 48.426 1 2.65 ? CAR AGH 282 A 1 HETATM 53 C CAS AGH . . . E 3 31.967 32.667 47.617 1 3.79 ? CAS AGH 282 A 1 HETATM 54 C CAT AGH . . . E 3 32.733 31.417 48.055 1 5.29 ? CAT AGH 282 A 1 HETATM 55 C CAU AGH . . . E 3 32.211 30.883 49.392 1 20.63 ? CAU AGH 282 A 1 HETATM 56 C CAV AGH . . . E 3 32.454 29.382 49.576 1 13.22 ? CAV AGH 282 A 1 HETATM 57 C CAW AGH . . . E 3 33.892 28.996 49.928 1 20 ? CAW AGH 282 A 1 HETATM 58 C CAX AGH . . . E 3 34.298 29.319 51.368 1 15.82 ? CAX AGH 282 A 1 HETATM 59 C CAY AGH . . . E 3 35.144 30.591 51.41 1 17.17 ? CAY AGH 282 A 1 HETATM 60 C CAZ AGH . . . E 3 36.123 30.572 52.586 1 4.67 ? CAZ AGH 282 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 60 #