data_1ZV5 # _model_server_result.job_id oc_xtyDJYuRFx4jtkAZYgA _model_server_result.datetime_utc '2024-11-21 17:50:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":132}' # _entry.id 1ZV5 # _exptl.entry_id 1ZV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZV5 _cell.length_a 114.073 _cell.length_b 114.073 _cell.length_c 35.673 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 L CYS 6 1_555 A SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 30 L CYS 30 1_555 A SG CYS 115 L CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 64 L CYS 64 1_555 A SG CYS 80 L CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 76 L CYS 76 1_555 A SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 B SG CYS 22 A CYS 22 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 B SG CYS 33 A CYS 33 1_555 B SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1ZV5 _atom_sites.fract_transf_matrix[1][1] 0.00877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 131 106 PO4 PO4 . D 3 PO4 A 1 132 107 PO4 PO4 . E 4 HOH L 1 130 1 HOH TIP . E 4 HOH L 2 131 3 HOH TIP . E 4 HOH L 3 132 6 HOH TIP . E 4 HOH L 4 133 12 HOH TIP . E 4 HOH L 5 134 15 HOH TIP . E 4 HOH L 6 135 16 HOH TIP . E 4 HOH L 7 136 17 HOH TIP . E 4 HOH L 8 137 31 HOH TIP . E 4 HOH L 9 138 36 HOH TIP . E 4 HOH L 10 139 39 HOH TIP . E 4 HOH L 11 140 41 HOH TIP . E 4 HOH L 12 141 46 HOH TIP . E 4 HOH L 13 142 50 HOH TIP . F 4 HOH A 1 133 2 HOH TIP . F 4 HOH A 2 134 4 HOH TIP . F 4 HOH A 3 135 5 HOH TIP . F 4 HOH A 4 136 7 HOH TIP . F 4 HOH A 5 137 8 HOH TIP . F 4 HOH A 6 138 9 HOH TIP . F 4 HOH A 7 139 10 HOH TIP . F 4 HOH A 8 140 11 HOH TIP . F 4 HOH A 9 141 13 HOH TIP . F 4 HOH A 10 142 14 HOH TIP . F 4 HOH A 11 143 18 HOH TIP . F 4 HOH A 12 144 19 HOH TIP . F 4 HOH A 13 145 20 HOH TIP . F 4 HOH A 14 146 21 HOH TIP . F 4 HOH A 15 147 22 HOH TIP . F 4 HOH A 16 148 23 HOH TIP . F 4 HOH A 17 149 25 HOH TIP . F 4 HOH A 18 150 26 HOH TIP . F 4 HOH A 19 151 27 HOH TIP . F 4 HOH A 20 152 28 HOH TIP . F 4 HOH A 21 153 29 HOH TIP . F 4 HOH A 22 154 30 HOH TIP . F 4 HOH A 23 155 35 HOH TIP . F 4 HOH A 24 156 37 HOH TIP . F 4 HOH A 25 157 38 HOH TIP . F 4 HOH A 26 158 40 HOH TIP . F 4 HOH A 27 159 42 HOH TIP . F 4 HOH A 28 160 43 HOH TIP . F 4 HOH A 29 161 47 HOH TIP . F 4 HOH A 30 162 48 HOH TIP . F 4 HOH A 31 163 49 HOH TIP . F 4 HOH A 32 164 51 HOH TIP . F 4 HOH A 33 165 52 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 3 26.956 -48.067 -6.943 1 61.84 ? P PO4 132 A 1 HETATM 2 O O1 PO4 . . . D 3 25.401 -47.639 -7.209 1 61.27 ? O1 PO4 132 A 1 HETATM 3 O O2 PO4 . . . D 3 27.343 -48.465 -5.411 1 62.28 ? O2 PO4 132 A 1 HETATM 4 O O3 PO4 . . . D 3 28.067 -47.464 -7.95 1 61.34 ? O3 PO4 132 A 1 HETATM 5 O O4 PO4 . . . D 3 26.835 -49.563 -7.401 1 60.94 ? O4 PO4 132 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #