data_1ZVV # _model_server_result.job_id 2B3EqV82rxh3SlMlwsOcfQ _model_server_result.datetime_utc '2024-10-25 20:29:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":415}' # _entry.id 1ZVV # _exptl.entry_id 1ZVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.73 _cell.angle_gamma 90 _cell.entry_id 1ZVV _cell.length_a 83.69 _cell.length_b 158.1 _cell.length_c 125.47 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZVV _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J,K,L,M,N,U,W,X 1 1,2 B,F,G,O,P,Q,R,V,Y,Z 2 1 C,H,I,S,T,AA 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 60.329859 0 123.276213 3 'crystal symmetry operation' 3_445 x-1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 -41.845 -79.05 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C LYS 45 W LYS 45 1_555 E N SEP 46 W SEP 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 E C SEP 46 W SEP 46 1_555 E N ILE 47 W ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 G C LYS 45 P LYS 45 1_555 G N SEP 46 P SEP 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 G C SEP 46 P SEP 46 1_555 G N ILE 47 P ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 I C LYS 45 J LYS 45 1_555 I N SEP 46 J SEP 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 I C SEP 46 J SEP 46 1_555 I N ILE 47 J ILE 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 O DC 700 1_555 A N1 DG 16 O DG 715 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 O DC 700 1_555 A O6 DG 16 O DG 715 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 O DC 700 1_555 A N2 DG 16 O DG 715 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 2 O DT 701 1_555 A N1 DA 15 O DA 714 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 2 O DT 701 1_555 A N6 DA 15 O DA 714 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 O DG 702 1_555 A N3 DC 14 O DC 713 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 O DG 702 1_555 A O2 DC 14 O DC 713 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 O DG 702 1_555 A N4 DC 14 O DC 713 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_1_PAIR hydrog9 A N1 DA 4 O DA 703 1_555 A N6 DA 13 O DA 712 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_1_PAIR hydrog10 A N6 DA 4 O DA 703 1_555 A N1 DA 13 O DA 712 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog11 A N1 DA 5 O DA 704 1_555 A N3 DT 12 O DT 711 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 O DA 705 1_555 A N3 DT 11 O DT 710 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 O DA 705 1_555 A O4 DT 11 O DT 710 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DG 7 O DG 706 1_555 A N3 DC 10 O DC 709 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N2 DG 7 O DG 706 1_555 A O2 DC 10 O DC 709 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O6 DG 7 O DG 706 1_555 A N4 DC 10 O DC 709 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DC 8 O DC 707 1_555 A N1 DG 9 O DG 708 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N4 DC 8 O DC 707 1_555 A O6 DG 9 O DG 708 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O2 DC 8 O DC 707 1_555 A N2 DG 9 O DG 708 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 9 O DG 708 1_555 A N3 DC 8 O DC 707 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 9 O DG 708 1_555 A O2 DC 8 O DC 707 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 9 O DG 708 1_555 A N4 DC 8 O DC 707 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 10 O DC 709 1_555 A N1 DG 7 O DG 706 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 10 O DC 709 1_555 A O6 DG 7 O DG 706 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 10 O DC 709 1_555 A N2 DG 7 O DG 706 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 DT 11 O DT 710 1_555 A N1 DA 6 O DA 705 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O4 DT 11 O DT 710 1_555 A N6 DA 6 O DA 705 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog28 A N3 DT 12 O DT 711 1_555 A N1 DA 5 O DA 704 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_1_PAIR hydrog29 A N1 DA 13 O DA 712 1_555 A N6 DA 4 O DA 703 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_1_PAIR hydrog30 A N6 DA 13 O DA 712 1_555 A N1 DA 4 O DA 703 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N3 DC 14 O DC 713 1_555 A N1 DG 3 O DG 702 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N4 DC 14 O DC 713 1_555 A O6 DG 3 O DG 702 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O2 DC 14 O DC 713 1_555 A N2 DG 3 O DG 702 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N1 DA 15 O DA 714 1_555 A N3 DT 2 O DT 701 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N6 DA 15 O DA 714 1_555 A O4 DT 2 O DT 701 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N1 DG 16 O DG 715 1_555 A N3 DC 1 O DC 700 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N2 DG 16 O DG 715 1_555 A O2 DC 1 O DC 700 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O6 DG 16 O DG 715 1_555 A N4 DC 1 O DC 700 2_656 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ZVV _atom_sites.fract_transf_matrix[1][1] 0.011949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006325 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 IOD O 1 415 415 IOD IOD . K 4 IOD A 1 410 410 IOD IOD . L 4 IOD A 1 411 411 IOD IOD . M 4 IOD A 1 412 412 IOD IOD . N 4 IOD A 1 413 413 IOD IOD . O 4 IOD B 1 422 422 IOD IOD . P 4 IOD B 1 419 419 IOD IOD . Q 4 IOD B 1 420 420 IOD IOD . R 4 IOD P 1 421 421 IOD IOD . S 4 IOD G 1 414 414 IOD IOD . T 4 IOD G 1 418 418 IOD IOD . U 5 HOH O 1 36 36 HOH HOH . U 5 HOH O 2 37 37 HOH HOH . U 5 HOH O 3 38 38 HOH HOH . U 5 HOH O 4 39 39 HOH HOH . U 5 HOH O 5 40 40 HOH HOH . U 5 HOH O 6 41 41 HOH HOH . V 5 HOH T 1 29 29 HOH HOH . W 5 HOH A 1 414 2 HOH HOH . W 5 HOH A 2 415 3 HOH HOH . W 5 HOH A 3 416 4 HOH HOH . W 5 HOH A 4 417 5 HOH HOH . W 5 HOH A 5 418 7 HOH HOH . W 5 HOH A 6 419 8 HOH HOH . W 5 HOH A 7 420 9 HOH HOH . W 5 HOH A 8 421 10 HOH HOH . W 5 HOH A 9 422 15 HOH HOH . W 5 HOH A 10 423 42 HOH HOH . X 5 HOH W 1 86 1 HOH HOH . X 5 HOH W 2 87 12 HOH HOH . X 5 HOH W 3 88 13 HOH HOH . X 5 HOH W 4 89 14 HOH HOH . X 5 HOH W 5 90 16 HOH HOH . X 5 HOH W 6 91 44 HOH HOH . Y 5 HOH B 1 423 27 HOH HOH . Y 5 HOH B 2 424 28 HOH HOH . Y 5 HOH B 3 425 30 HOH HOH . Y 5 HOH B 4 426 45 HOH HOH . Y 5 HOH B 5 427 46 HOH HOH . Y 5 HOH B 6 428 47 HOH HOH . Y 5 HOH B 7 429 48 HOH HOH . Y 5 HOH B 8 430 50 HOH HOH . Y 5 HOH B 9 431 51 HOH HOH . Z 5 HOH P 1 422 35 HOH HOH . Z 5 HOH P 2 423 43 HOH HOH . AA 5 HOH G 1 419 19 HOH HOH . AA 5 HOH G 2 420 20 HOH HOH . AA 5 HOH G 3 421 21 HOH HOH . AA 5 HOH G 4 422 22 HOH HOH . AA 5 HOH G 5 423 23 HOH HOH . AA 5 HOH G 6 424 24 HOH HOH . AA 5 HOH G 7 425 25 HOH HOH . AA 5 HOH G 8 426 26 HOH HOH . AA 5 HOH G 9 427 31 HOH HOH . AA 5 HOH G 10 428 32 HOH HOH . AA 5 HOH G 11 429 33 HOH HOH . AA 5 HOH G 12 430 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x 25.709 _atom_site.Cartn_y 100.621 _atom_site.Cartn_z 58.506 _atom_site.occupancy 0.48 _atom_site.B_iso_or_equiv 111.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 415 _atom_site.auth_asym_id O _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #