data_1ZW1 # _model_server_result.job_id 3hko7YnzcrLl_LetnKu5Ng _model_server_result.datetime_utc '2025-03-05 18:59:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":451}' # _entry.id 1ZW1 # _exptl.entry_id 1ZW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZW1 _cell.length_a 131.266 _cell.length_b 131.266 _cell.length_c 82.897 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZW1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.266 131.266 41.4485 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1ZW1 _atom_sites.fract_transf_matrix[1][1] 0.007618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 450 450 NAD NAD . D 3 TN5 A 1 500 500 TN5 TN5 . E 2 NAD B 1 451 451 NAD NAD . F 3 TN5 B 1 501 501 TN5 TN5 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 7.995 99.183 32.285 1 29.44 ? PA NAD 451 B 1 HETATM 2 O O1A NAD . . . E 2 7.779 98.515 33.597 1 32.62 ? O1A NAD 451 B 1 HETATM 3 O O2A NAD . . . E 2 6.809 99.404 31.371 1 29.7 ? O2A NAD 451 B 1 HETATM 4 O O5B NAD . . . E 2 8.699 100.569 32.691 1 28.42 ? O5B NAD 451 B 1 HETATM 5 C C5B NAD . . . E 2 8.505 101.857 32.122 1 29.09 ? C5B NAD 451 B 1 HETATM 6 C C4B NAD . . . E 2 7.969 102.751 33.167 1 29.95 ? C4B NAD 451 B 1 HETATM 7 O O4B NAD . . . E 2 8.406 104.115 32.987 1 29.95 ? O4B NAD 451 B 1 HETATM 8 C C3B NAD . . . E 2 6.439 102.766 33.177 1 31.95 ? C3B NAD 451 B 1 HETATM 9 O O3B NAD . . . E 2 6.061 101.982 34.344 1 31.58 ? O3B NAD 451 B 1 HETATM 10 C C2B NAD . . . E 2 6.017 104.235 33.242 1 31.72 ? C2B NAD 451 B 1 HETATM 11 O O2B NAD . . . E 2 5.211 104.422 34.395 1 35.34 ? O2B NAD 451 B 1 HETATM 12 C C1B NAD . . . E 2 7.359 105.025 33.276 1 29.99 ? C1B NAD 451 B 1 HETATM 13 N N9A NAD . . . E 2 7.451 106.126 32.301 1 28.92 ? N9A NAD 451 B 1 HETATM 14 C C8A NAD . . . E 2 7.339 106.414 30.95 1 29.82 ? C8A NAD 451 B 1 HETATM 15 N N7A NAD . . . E 2 7.543 107.675 30.599 1 29.04 ? N7A NAD 451 B 1 HETATM 16 C C5A NAD . . . E 2 7.816 108.298 31.809 1 27.91 ? C5A NAD 451 B 1 HETATM 17 C C6A NAD . . . E 2 8.119 109.632 32.141 1 27.06 ? C6A NAD 451 B 1 HETATM 18 N N6A NAD . . . E 2 8.194 110.606 31.234 1 24.28 ? N6A NAD 451 B 1 HETATM 19 N N1A NAD . . . E 2 8.348 109.945 33.477 1 26.9 ? N1A NAD 451 B 1 HETATM 20 C C2A NAD . . . E 2 8.278 108.969 34.435 1 25.98 ? C2A NAD 451 B 1 HETATM 21 N N3A NAD . . . E 2 7.997 107.662 34.24 1 26.69 ? N3A NAD 451 B 1 HETATM 22 C C4A NAD . . . E 2 7.769 107.368 32.882 1 27.83 ? C4A NAD 451 B 1 HETATM 23 O O3 NAD . . . E 2 8.933 98.538 31.295 1 29.83 ? O3 NAD 451 B 1 HETATM 24 P PN NAD . . . E 2 10.322 98.028 31.431 1 29.95 ? PN NAD 451 B 1 HETATM 25 O O1N NAD . . . E 2 10.564 97.262 32.692 1 31.05 ? O1N NAD 451 B 1 HETATM 26 O O2N NAD . . . E 2 10.615 97.364 30.138 1 30.56 ? O2N NAD 451 B 1 HETATM 27 O O5D NAD . . . E 2 11.156 99.396 31.236 1 28.45 ? O5D NAD 451 B 1 HETATM 28 C C5D NAD . . . E 2 12.09 99.961 32.18 1 26 ? C5D NAD 451 B 1 HETATM 29 C C4D NAD . . . E 2 13.5 100.105 31.54 1 24.26 ? C4D NAD 451 B 1 HETATM 30 O O4D NAD . . . E 2 13.937 98.808 31.048 1 24.17 ? O4D NAD 451 B 1 HETATM 31 C C3D NAD . . . E 2 13.523 101.067 30.346 1 23.28 ? C3D NAD 451 B 1 HETATM 32 O O3D NAD . . . E 2 14.567 102.005 30.503 1 24.17 ? O3D NAD 451 B 1 HETATM 33 C C2D NAD . . . E 2 13.697 100.177 29.167 1 23.66 ? C2D NAD 451 B 1 HETATM 34 O O2D NAD . . . E 2 14.296 100.811 28.058 1 20.02 ? O2D NAD 451 B 1 HETATM 35 C C1D NAD . . . E 2 14.521 99.072 29.762 1 24.21 ? C1D NAD 451 B 1 HETATM 36 N N1N NAD . . . E 2 14.709 97.819 29.029 1 23.86 ? N1N NAD 451 B 1 HETATM 37 C C2N NAD . . . E 2 13.655 96.84 29.043 1 25.1 ? C2N NAD 451 B 1 HETATM 38 C C3N NAD . . . E 2 13.665 95.577 28.414 1 26.8 ? C3N NAD 451 B 1 HETATM 39 C C7N NAD . . . E 2 12.605 94.539 28.41 1 27.72 ? C7N NAD 451 B 1 HETATM 40 O O7N NAD . . . E 2 12.731 93.382 27.764 1 29.46 ? O7N NAD 451 B 1 HETATM 41 N N7N NAD . . . E 2 11.434 94.632 29.026 1 27.57 ? N7N NAD 451 B 1 HETATM 42 C C4N NAD . . . E 2 14.905 95.399 27.748 1 24.46 ? C4N NAD 451 B 1 HETATM 43 C C5N NAD . . . E 2 16.035 96.305 27.661 1 24.31 ? C5N NAD 451 B 1 HETATM 44 C C6N NAD . . . E 2 15.904 97.579 28.349 1 23.22 ? C6N NAD 451 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #