data_1ZWL # _model_server_result.job_id 7KhiYYrx5uV15zhLztQ6kg _model_server_result.datetime_utc '2024-11-28 15:15:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zwl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":199}' # _entry.id 1ZWL # _exptl.entry_id 1ZWL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZWL _cell.length_a 73.54 _cell.length_b 73.54 _cell.length_c 78.166 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZWL _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 73.54 0 3 'crystal symmetry operation' 5_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 78.166 4 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 73.54 78.166 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1ZWL _atom_sites.fract_transf_matrix[1][1] 0.013598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 199 187 FMN FMN . C 3 HOH A 1 200 1 HOH HOH . C 3 HOH A 2 201 2 HOH HOH . C 3 HOH A 3 202 3 HOH HOH . C 3 HOH A 4 203 4 HOH HOH . C 3 HOH A 5 204 5 HOH HOH . C 3 HOH A 6 205 6 HOH HOH . C 3 HOH A 7 206 7 HOH HOH . C 3 HOH A 8 207 8 HOH HOH . C 3 HOH A 9 208 9 HOH HOH . C 3 HOH A 10 209 10 HOH HOH . C 3 HOH A 11 210 11 HOH HOH . C 3 HOH A 12 211 12 HOH HOH . C 3 HOH A 13 212 13 HOH HOH . C 3 HOH A 14 213 14 HOH HOH . C 3 HOH A 15 214 15 HOH HOH . C 3 HOH A 16 215 16 HOH HOH . C 3 HOH A 17 216 17 HOH HOH . C 3 HOH A 18 217 18 HOH HOH . C 3 HOH A 19 218 19 HOH HOH . C 3 HOH A 20 219 20 HOH HOH . C 3 HOH A 21 220 21 HOH HOH . C 3 HOH A 22 221 22 HOH HOH . C 3 HOH A 23 222 23 HOH HOH . C 3 HOH A 24 223 24 HOH HOH . C 3 HOH A 25 224 25 HOH HOH . C 3 HOH A 26 225 26 HOH HOH . C 3 HOH A 27 226 27 HOH HOH . C 3 HOH A 28 227 28 HOH HOH . C 3 HOH A 29 228 29 HOH HOH . C 3 HOH A 30 229 30 HOH HOH . C 3 HOH A 31 230 31 HOH HOH . C 3 HOH A 32 231 32 HOH HOH . C 3 HOH A 33 232 33 HOH HOH . C 3 HOH A 34 233 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 3.738 22.954 27.989 1 57.67 ? N1 FMN 199 A 1 HETATM 2 C C2 FMN . . . B 2 3.949 23.19 29.332 1 57.91 ? C2 FMN 199 A 1 HETATM 3 O O2 FMN . . . B 2 3.626 22.326 30.16 1 57.6 ? O2 FMN 199 A 1 HETATM 4 N N3 FMN . . . B 2 4.522 24.397 29.717 1 58.21 ? N3 FMN 199 A 1 HETATM 5 C C4 FMN . . . B 2 4.888 25.354 28.774 1 58.24 ? C4 FMN 199 A 1 HETATM 6 O O4 FMN . . . B 2 5.551 26.339 29.128 1 58.04 ? O4 FMN 199 A 1 HETATM 7 C C4A FMN . . . B 2 4.667 25.086 27.415 1 57.94 ? C4A FMN 199 A 1 HETATM 8 N N5 FMN . . . B 2 5.026 25.995 26.432 1 57.64 ? N5 FMN 199 A 1 HETATM 9 C C5A FMN . . . B 2 4.796 25.702 25.099 1 57.74 ? C5A FMN 199 A 1 HETATM 10 C C6 FMN . . . B 2 5.151 26.621 24.121 1 57.9 ? C6 FMN 199 A 1 HETATM 11 C C7 FMN . . . B 2 4.943 26.358 22.769 1 57.93 ? C7 FMN 199 A 1 HETATM 12 C C7M FMN . . . B 2 5.844 27.112 21.832 1 57.64 ? C7M FMN 199 A 1 HETATM 13 C C8 FMN . . . B 2 4.343 25.141 22.388 1 57.88 ? C8 FMN 199 A 1 HETATM 14 C C8M FMN . . . B 2 4.062 24.772 20.953 1 56.69 ? C8M FMN 199 A 1 HETATM 15 C C9 FMN . . . B 2 3.988 24.229 23.378 1 57.87 ? C9 FMN 199 A 1 HETATM 16 C C9A FMN . . . B 2 4.206 24.496 24.732 1 57.86 ? C9A FMN 199 A 1 HETATM 17 N N10 FMN . . . B 2 3.85 23.583 25.721 1 57.55 ? N10 FMN 199 A 1 HETATM 18 C C10 FMN . . . B 2 4.091 23.875 27.041 1 57.14 ? C10 FMN 199 A 1 HETATM 19 C C1' FMN . . . B 2 3.037 22.36 25.41 1 57.81 ? C1' FMN 199 A 1 HETATM 20 C C2' FMN . . . B 2 1.588 22.698 25.08 1 57.75 ? C2' FMN 199 A 1 HETATM 21 O O2' FMN . . . B 2 0.98 23.315 26.191 1 57.41 ? O2' FMN 199 A 1 HETATM 22 C C3' FMN . . . B 2 0.852 21.433 24.623 1 58.15 ? C3' FMN 199 A 1 HETATM 23 O O3' FMN . . . B 2 1.292 21.116 23.313 1 58.82 ? O3' FMN 199 A 1 HETATM 24 C C4' FMN . . . B 2 -0.667 21.62 24.606 1 57.85 ? C4' FMN 199 A 1 HETATM 25 O O4' FMN . . . B 2 -1.265 20.747 25.532 1 58.32 ? O4' FMN 199 A 1 HETATM 26 C C5' FMN . . . B 2 -1.258 21.34 23.237 1 56.32 ? C5' FMN 199 A 1 HETATM 27 O O5' FMN . . . B 2 -2.445 22.077 23.102 1 55.29 ? O5' FMN 199 A 1 HETATM 28 P P FMN . . . B 2 -3.277 21.96 21.729 1 56.41 ? P FMN 199 A 1 HETATM 29 O O1P FMN . . . B 2 -3.27 20.489 21.324 1 58.25 ? O1P FMN 199 A 1 HETATM 30 O O2P FMN . . . B 2 -4.702 22.399 21.95 1 55.72 ? O2P FMN 199 A 1 HETATM 31 O O3P FMN . . . B 2 -2.619 22.784 20.636 1 55.85 ? O3P FMN 199 A 1 # _model_server_stats.io_time_ms 99 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #