data_1ZWN # _model_server_result.job_id YmMmRadCLwrb3dHyGGqQng _model_server_result.datetime_utc '2024-12-20 17:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1131}' # _entry.id 1ZWN # _exptl.entry_id 1ZWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,4,5,5-pentamethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ZWN _cell.length_a 59.793 _cell.length_b 59.793 _cell.length_c 95.442 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 131 A CYS 131 1_555 B SD R1B . A R1B 1131 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.997 ? covale ? covale2 A SG CYS 131 A CYS 131 1_555 B SD R1B . A R1B 1131 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.99 ? # _chem_comp.formula 'C11 H20 N O3 S2' _chem_comp.formula_weight 278.411 _chem_comp.id R1B _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,4,5,5-pentamethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SD CE R1B sing 296 n n CE C3 R1B sing 297 n n C3 C2 R1B sing 298 n n C3 C4 R1B doub 299 n n C9 C2 R1B sing 300 n n C8 C2 R1B sing 301 n n C2 N1 R1B sing 302 n n C10 C4 R1B sing 303 n n C4 C5 R1B sing 304 n n N1 C5 R1B sing 305 n n N1 O1 R1B sing 306 n n C5 C7 R1B sing 307 n n C5 C6 R1B sing 308 n n C8 H2 R1B sing 309 n n C8 H3 R1B sing 310 n n C8 H4 R1B sing 311 n n C9 H5 R1B sing 312 n n C9 H6 R1B sing 313 n n C9 H7 R1B sing 314 n n C7 H8 R1B sing 315 n n C7 H9 R1B sing 316 n n C7 H10 R1B sing 317 n n C6 H11 R1B sing 318 n n C6 H12 R1B sing 319 n n C6 H13 R1B sing 320 n n C10 H14 R1B sing 321 n n C10 H15 R1B sing 322 n n C10 H16 R1B sing 323 n n CE H17 R1B sing 324 n n CE H18 R1B sing 325 n n SD S1 R1B sing 326 n n S1 C11 R1B sing 327 n n S1 O2 R1B doub 328 n n S1 O3 R1B doub 329 n n C11 H19 R1B sing 330 n n C11 H20 R1B sing 331 n n C11 H21 R1B sing 332 n n # _atom_sites.entry_id 1ZWN _atom_sites.fract_transf_matrix[1][1] 0.016724 _atom_sites.fract_transf_matrix[1][2] 0.009656 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R1B A 1 1131 131 R1B R1B . C 3 AZI A 1 181 181 AZI AZI . D 3 AZI A 1 182 182 AZI AZI . E 4 CL A 1 200 200 CL CL . F 4 CL A 1 201 201 CL CL . G 4 CL A 1 202 202 CL CL . H 5 HED A 1 180 180 HED HED . I 6 HOH A 1 203 203 HOH HOH . I 6 HOH A 2 204 204 HOH HOH . I 6 HOH A 3 205 205 HOH HOH . I 6 HOH A 4 206 206 HOH HOH . I 6 HOH A 5 207 207 HOH HOH . I 6 HOH A 6 208 208 HOH HOH . I 6 HOH A 7 209 209 HOH HOH . I 6 HOH A 8 210 210 HOH HOH . I 6 HOH A 9 211 211 HOH HOH . I 6 HOH A 10 212 212 HOH HOH . I 6 HOH A 11 213 213 HOH HOH . I 6 HOH A 12 214 214 HOH HOH . I 6 HOH A 13 215 215 HOH HOH . I 6 HOH A 14 217 217 HOH HOH . I 6 HOH A 15 218 218 HOH HOH . I 6 HOH A 16 219 219 HOH HOH . I 6 HOH A 17 220 220 HOH HOH . I 6 HOH A 18 221 221 HOH HOH . I 6 HOH A 19 222 222 HOH HOH . I 6 HOH A 20 223 223 HOH HOH . I 6 HOH A 21 224 224 HOH HOH . I 6 HOH A 22 225 225 HOH HOH . I 6 HOH A 23 226 226 HOH HOH . I 6 HOH A 24 227 227 HOH HOH . I 6 HOH A 25 228 228 HOH HOH . I 6 HOH A 26 229 229 HOH HOH . I 6 HOH A 27 230 230 HOH HOH . I 6 HOH A 28 231 231 HOH HOH . I 6 HOH A 29 232 232 HOH HOH . I 6 HOH A 30 233 233 HOH HOH . I 6 HOH A 31 234 234 HOH HOH . I 6 HOH A 32 235 235 HOH HOH . I 6 HOH A 33 236 236 HOH HOH . I 6 HOH A 34 237 237 HOH HOH . I 6 HOH A 35 238 238 HOH HOH . I 6 HOH A 36 239 239 HOH HOH . I 6 HOH A 37 240 240 HOH HOH . I 6 HOH A 38 241 241 HOH HOH . I 6 HOH A 39 242 242 HOH HOH . I 6 HOH A 40 243 243 HOH HOH . I 6 HOH A 41 244 244 HOH HOH . I 6 HOH A 42 246 246 HOH HOH . I 6 HOH A 43 247 247 HOH HOH . I 6 HOH A 44 248 248 HOH HOH . I 6 HOH A 45 249 249 HOH HOH . I 6 HOH A 46 250 250 HOH HOH . I 6 HOH A 47 251 251 HOH HOH . I 6 HOH A 48 252 252 HOH HOH . I 6 HOH A 49 253 253 HOH HOH . I 6 HOH A 50 254 254 HOH HOH . I 6 HOH A 51 255 255 HOH HOH . I 6 HOH A 52 256 256 HOH HOH . I 6 HOH A 53 257 257 HOH HOH . I 6 HOH A 54 258 258 HOH HOH . I 6 HOH A 55 259 259 HOH HOH . I 6 HOH A 56 260 260 HOH HOH . I 6 HOH A 57 261 261 HOH HOH . I 6 HOH A 58 262 262 HOH HOH . I 6 HOH A 59 263 263 HOH HOH . I 6 HOH A 60 264 264 HOH HOH . I 6 HOH A 61 265 265 HOH HOH . I 6 HOH A 62 266 266 HOH HOH . I 6 HOH A 63 267 267 HOH HOH . I 6 HOH A 64 268 268 HOH HOH . I 6 HOH A 65 269 269 HOH HOH . I 6 HOH A 66 270 270 HOH HOH . I 6 HOH A 67 271 271 HOH HOH . I 6 HOH A 68 272 272 HOH HOH . I 6 HOH A 69 273 273 HOH HOH . I 6 HOH A 70 274 274 HOH HOH . I 6 HOH A 71 275 275 HOH HOH . I 6 HOH A 72 276 276 HOH HOH . I 6 HOH A 73 277 277 HOH HOH . I 6 HOH A 74 278 278 HOH HOH . I 6 HOH A 75 279 279 HOH HOH . I 6 HOH A 76 280 280 HOH HOH . I 6 HOH A 77 281 281 HOH HOH . I 6 HOH A 78 282 282 HOH HOH . I 6 HOH A 79 283 283 HOH HOH . I 6 HOH A 80 284 284 HOH HOH . I 6 HOH A 81 285 285 HOH HOH . I 6 HOH A 82 287 287 HOH HOH . I 6 HOH A 83 288 288 HOH HOH . I 6 HOH A 84 290 290 HOH HOH . I 6 HOH A 85 291 291 HOH HOH . I 6 HOH A 86 292 292 HOH HOH . I 6 HOH A 87 293 293 HOH HOH . I 6 HOH A 88 294 294 HOH HOH . I 6 HOH A 89 295 295 HOH HOH . I 6 HOH A 90 296 296 HOH HOH . I 6 HOH A 91 297 297 HOH HOH . I 6 HOH A 92 298 298 HOH HOH . I 6 HOH A 93 299 299 HOH HOH . I 6 HOH A 94 300 300 HOH HOH . I 6 HOH A 95 301 301 HOH HOH . I 6 HOH A 96 302 302 HOH HOH . I 6 HOH A 97 303 303 HOH HOH . I 6 HOH A 98 304 304 HOH HOH . I 6 HOH A 99 305 305 HOH HOH . I 6 HOH A 100 306 306 HOH HOH . I 6 HOH A 101 307 307 HOH HOH . I 6 HOH A 102 308 308 HOH HOH . I 6 HOH A 103 309 309 HOH HOH . I 6 HOH A 104 310 310 HOH HOH . I 6 HOH A 105 311 311 HOH HOH . I 6 HOH A 106 312 312 HOH HOH . I 6 HOH A 107 313 313 HOH HOH . I 6 HOH A 108 314 314 HOH HOH . I 6 HOH A 109 315 315 HOH HOH . I 6 HOH A 110 316 316 HOH HOH . I 6 HOH A 111 317 317 HOH HOH . I 6 HOH A 112 318 318 HOH HOH . I 6 HOH A 113 319 319 HOH HOH . I 6 HOH A 114 320 320 HOH HOH . I 6 HOH A 115 321 321 HOH HOH . I 6 HOH A 116 322 322 HOH HOH . I 6 HOH A 117 323 323 HOH HOH . I 6 HOH A 118 324 324 HOH HOH . I 6 HOH A 119 325 325 HOH HOH . I 6 HOH A 120 326 326 HOH HOH . I 6 HOH A 121 327 327 HOH HOH . I 6 HOH A 122 328 328 HOH HOH . I 6 HOH A 123 329 329 HOH HOH . I 6 HOH A 124 330 330 HOH HOH . I 6 HOH A 125 331 331 HOH HOH . I 6 HOH A 126 332 332 HOH HOH . I 6 HOH A 127 333 333 HOH HOH . I 6 HOH A 128 334 334 HOH HOH . I 6 HOH A 129 335 335 HOH HOH . I 6 HOH A 130 336 336 HOH HOH . I 6 HOH A 131 337 337 HOH HOH . I 6 HOH A 132 338 338 HOH HOH . I 6 HOH A 133 339 339 HOH HOH . I 6 HOH A 134 340 340 HOH HOH . I 6 HOH A 135 341 341 HOH HOH . I 6 HOH A 136 342 342 HOH HOH . I 6 HOH A 137 343 343 HOH HOH . I 6 HOH A 138 344 344 HOH HOH . I 6 HOH A 139 345 345 HOH HOH . I 6 HOH A 140 346 346 HOH HOH . I 6 HOH A 141 347 347 HOH HOH . I 6 HOH A 142 348 348 HOH HOH . I 6 HOH A 143 349 349 HOH HOH . I 6 HOH A 144 351 351 HOH HOH . I 6 HOH A 145 353 353 HOH HOH . I 6 HOH A 146 354 354 HOH HOH . I 6 HOH A 147 355 355 HOH HOH . I 6 HOH A 148 356 356 HOH HOH . I 6 HOH A 149 357 357 HOH HOH . I 6 HOH A 150 358 358 HOH HOH . I 6 HOH A 151 359 359 HOH HOH . I 6 HOH A 152 360 360 HOH HOH . I 6 HOH A 153 361 361 HOH HOH . I 6 HOH A 154 362 362 HOH HOH . I 6 HOH A 155 363 363 HOH HOH . I 6 HOH A 156 364 364 HOH HOH . I 6 HOH A 157 365 365 HOH HOH . I 6 HOH A 158 366 366 HOH HOH . I 6 HOH A 159 367 367 HOH HOH . I 6 HOH A 160 368 368 HOH HOH . I 6 HOH A 161 369 369 HOH HOH . I 6 HOH A 162 371 371 HOH HOH . I 6 HOH A 163 372 372 HOH HOH . I 6 HOH A 164 373 373 HOH HOH . I 6 HOH A 165 374 374 HOH HOH . I 6 HOH A 166 375 375 HOH HOH . I 6 HOH A 167 376 376 HOH HOH . I 6 HOH A 168 377 377 HOH HOH . I 6 HOH A 169 379 379 HOH HOH . I 6 HOH A 170 380 380 HOH HOH . I 6 HOH A 171 381 381 HOH HOH . I 6 HOH A 172 382 382 HOH HOH . I 6 HOH A 173 383 383 HOH HOH . I 6 HOH A 174 384 384 HOH HOH . I 6 HOH A 175 385 385 HOH HOH . I 6 HOH A 176 386 386 HOH HOH . I 6 HOH A 177 387 387 HOH HOH . I 6 HOH A 178 388 388 HOH HOH . I 6 HOH A 179 390 390 HOH HOH . I 6 HOH A 180 391 391 HOH HOH . I 6 HOH A 181 392 392 HOH HOH . I 6 HOH A 182 393 393 HOH HOH . I 6 HOH A 183 394 394 HOH HOH . I 6 HOH A 184 395 395 HOH HOH . I 6 HOH A 185 396 396 HOH HOH . I 6 HOH A 186 399 399 HOH HOH . I 6 HOH A 187 400 400 HOH HOH . I 6 HOH A 188 401 401 HOH HOH . I 6 HOH A 189 402 402 HOH HOH . I 6 HOH A 190 403 403 HOH HOH . I 6 HOH A 191 404 404 HOH HOH . I 6 HOH A 192 405 405 HOH HOH . I 6 HOH A 193 406 406 HOH HOH . I 6 HOH A 194 407 407 HOH HOH . I 6 HOH A 195 409 409 HOH HOH . I 6 HOH A 196 410 410 HOH HOH . I 6 HOH A 197 411 411 HOH HOH . I 6 HOH A 198 412 412 HOH HOH . I 6 HOH A 199 413 413 HOH HOH . I 6 HOH A 200 414 414 HOH HOH . I 6 HOH A 201 415 415 HOH HOH . I 6 HOH A 202 416 416 HOH HOH . I 6 HOH A 203 417 417 HOH HOH . I 6 HOH A 204 418 418 HOH HOH . I 6 HOH A 205 419 419 HOH HOH . I 6 HOH A 206 420 420 HOH HOH . I 6 HOH A 207 421 421 HOH HOH . I 6 HOH A 208 422 422 HOH HOH . I 6 HOH A 209 423 423 HOH HOH . I 6 HOH A 210 424 424 HOH HOH . I 6 HOH A 211 425 425 HOH HOH . I 6 HOH A 212 426 426 HOH HOH . I 6 HOH A 213 428 428 HOH HOH . I 6 HOH A 214 429 429 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 R1B . A . B 2 40.607 16.298 65.017 0.1 20 ? O1 R1B 1131 A 1 HETATM 2 O O1 R1B . B . B 2 41.061 20.871 63.005 0.1 20 ? O1 R1B 1131 A 1 HETATM 3 N N1 R1B . A . B 2 39.689 16.335 64.132 0.1 20 ? N1 R1B 1131 A 1 HETATM 4 N N1 R1B . B . B 2 40.426 19.815 62.679 0.1 20 ? N1 R1B 1131 A 1 HETATM 5 C C2 R1B . A . B 2 39.954 16.436 62.705 0.1 20 ? C2 R1B 1131 A 1 HETATM 6 C C2 R1B . B . B 2 38.987 19.659 62.845 0.1 20 ? C2 R1B 1131 A 1 HETATM 7 C C8 R1B . A . B 2 40.596 17.789 62.397 0.1 20 ? C8 R1B 1131 A 1 HETATM 8 C C8 R1B . B . B 2 38.585 19.805 64.308 0.1 20 ? C8 R1B 1131 A 1 HETATM 9 C C9 R1B . A . B 2 40.897 15.311 62.271 0.1 20 ? C9 R1B 1131 A 1 HETATM 10 C C9 R1B . B . B 2 38.238 20.714 62.026 0.1 20 ? C9 R1B 1131 A 1 HETATM 11 C C5 R1B . A . B 2 38.267 16.287 64.452 0.1 20 ? C5 R1B 1131 A 1 HETATM 12 C C5 R1B . B . B 2 41.074 18.64 62.103 0.1 20 ? C5 R1B 1131 A 1 HETATM 13 C C7 R1B . A . B 2 37.893 14.988 65.164 0.1 20 ? C7 R1B 1131 A 1 HETATM 14 C C7 R1B . B . B 2 41.91 19.001 60.873 0.1 20 ? C7 R1B 1131 A 1 HETATM 15 C C6 R1B . A . B 2 37.846 17.499 65.282 0.1 20 ? C6 R1B 1131 A 1 HETATM 16 C C6 R1B . B . B 2 41.934 17.915 63.141 0.1 20 ? C6 R1B 1131 A 1 HETATM 17 C C4 R1B . A . B 2 37.646 16.325 63.068 0.1 20 ? C4 R1B 1131 A 1 HETATM 18 C C4 R1B . B . B 2 39.872 17.791 61.733 0.1 20 ? C4 R1B 1131 A 1 HETATM 19 C C10 R1B . A . B 2 36.16 16.431 62.804 0.1 20 ? C10 R1B 1131 A 1 HETATM 20 C C10 R1B . B . B 2 39.941 16.54 60.884 0.1 20 ? C10 R1B 1131 A 1 HETATM 21 C C3 R1B . A . B 2 38.575 16.255 62.105 0.1 20 ? C3 R1B 1131 A 1 HETATM 22 C C3 R1B . B . B 2 38.74 18.292 62.244 0.1 20 ? C3 R1B 1131 A 1 HETATM 23 C CE R1B . A . B 2 38.196 16.002 60.647 0.1 20 ? CE R1B 1131 A 1 HETATM 24 C CE R1B . B . B 2 37.395 17.579 62.206 0.1 20 ? CE R1B 1131 A 1 HETATM 25 S SD R1B . A . B 2 38.937 16.988 59.385 0.5 20.37 ? SD R1B 1131 A 1 HETATM 26 S SD R1B . B . B 2 36.63 17.532 60.615 0.5 21.61 ? SD R1B 1131 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #