data_1ZX1 # _model_server_result.job_id o3TV6i_s8ZjHQPaLasDEGQ _model_server_result.datetime_utc '2024-10-14 08:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zx1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":233}' # _entry.id 1ZX1 # _exptl.entry_id 1ZX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 252.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(AZIRIDIN-1-YL)-2,4-DINITROBENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZX1 _cell.length_a 56.328 _cell.length_b 84.341 _cell.length_c 106.579 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 174 A HIS 173 1_555 C ZN ZN . A ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 A ND1 HIS 178 A HIS 177 1_555 C ZN ZN . A ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc3 A SG CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A O CYS 223 A CYS 222 1_555 C ZN ZN . A ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc5 B ND1 HIS 174 B HIS 173 1_555 F ZN ZN . B ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 B ND1 HIS 178 B HIS 177 1_555 F ZN ZN . B ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc7 B SG CYS 223 B CYS 222 1_555 F ZN ZN . B ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc8 B O CYS 223 B CYS 222 1_555 F ZN ZN . B ZN 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C9 H8 N4 O5' _chem_comp.formula_weight 252.184 _chem_comp.id CB1 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(AZIRIDIN-1-YL)-2,4-DINITROBENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CB1954;Tretazicar # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 CB1 doub 70 n y C C8 CB1 sing 71 n y C H1 CB1 sing 72 n n C1 C2 CB1 sing 73 n y C1 N CB1 sing 74 n n C2 C4 CB1 doub 75 n y C2 C3 CB1 sing 76 n n C4 C5 CB1 sing 77 n y C4 H41 CB1 sing 78 n n C5 C8 CB1 doub 79 n y C5 N6 CB1 sing 80 n n C8 N3 CB1 sing 81 n n N O1 CB1 doub 82 n n N O2 CB1 sing 83 n n C3 N1 CB1 sing 84 n n C3 O CB1 doub 85 n n N1 HN11 CB1 sing 86 n n N1 HN12 CB1 sing 87 n n N6 C7 CB1 sing 88 n n N6 C9 CB1 sing 89 n n C7 C9 CB1 sing 90 n n C7 H71 CB1 sing 91 n n C7 H72 CB1 sing 92 n n C9 H91 CB1 sing 93 n n C9 H92 CB1 sing 94 n n N3 O3 CB1 doub 95 n n N3 O4 CB1 sing 96 n n # _atom_sites.entry_id 1ZX1 _atom_sites.fract_transf_matrix[1][1] 0.017753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 231 231 ZN ZN . D 3 FAD A 1 232 232 FAD FAD . E 4 CB1 A 1 233 233 CB1 CB1 . F 2 ZN B 1 231 231 ZN ZN . G 3 FAD B 1 234 234 FAD FAD . H 4 CB1 B 1 235 235 CB1 CB1 . I 5 HOH A 1 234 2 HOH HOH . I 5 HOH A 2 235 4 HOH HOH . I 5 HOH A 3 236 10 HOH HOH . I 5 HOH A 4 237 11 HOH HOH . I 5 HOH A 5 238 15 HOH HOH . I 5 HOH A 6 239 18 HOH HOH . I 5 HOH A 7 240 19 HOH HOH . I 5 HOH A 8 241 23 HOH HOH . I 5 HOH A 9 242 24 HOH HOH . I 5 HOH A 10 243 26 HOH HOH . I 5 HOH A 11 244 27 HOH HOH . I 5 HOH A 12 245 31 HOH HOH . I 5 HOH A 13 246 34 HOH HOH . I 5 HOH A 14 247 35 HOH HOH . I 5 HOH A 15 248 36 HOH HOH . I 5 HOH A 16 249 37 HOH HOH . I 5 HOH A 17 250 38 HOH HOH . I 5 HOH A 18 251 47 HOH HOH . I 5 HOH A 19 252 54 HOH HOH . I 5 HOH A 20 253 60 HOH HOH . I 5 HOH A 21 254 62 HOH HOH . I 5 HOH A 22 255 65 HOH HOH . I 5 HOH A 23 256 66 HOH HOH . I 5 HOH A 24 257 67 HOH HOH . I 5 HOH A 25 258 74 HOH HOH . I 5 HOH A 26 259 76 HOH HOH . I 5 HOH A 27 260 78 HOH HOH . I 5 HOH A 28 261 79 HOH HOH . I 5 HOH A 29 262 80 HOH HOH . I 5 HOH A 30 263 82 HOH HOH . I 5 HOH A 31 264 83 HOH HOH . I 5 HOH A 32 265 89 HOH HOH . I 5 HOH A 33 266 90 HOH HOH . I 5 HOH A 34 267 97 HOH HOH . I 5 HOH A 35 268 99 HOH HOH . I 5 HOH A 36 269 101 HOH HOH . I 5 HOH A 37 270 107 HOH HOH . I 5 HOH A 38 271 114 HOH HOH . I 5 HOH A 39 272 120 HOH HOH . I 5 HOH A 40 273 121 HOH HOH . I 5 HOH A 41 274 123 HOH HOH . I 5 HOH A 42 275 128 HOH HOH . I 5 HOH A 43 276 129 HOH HOH . I 5 HOH A 44 277 131 HOH HOH . I 5 HOH A 45 278 132 HOH HOH . I 5 HOH A 46 279 133 HOH HOH . I 5 HOH A 47 280 134 HOH HOH . I 5 HOH A 48 281 136 HOH HOH . I 5 HOH A 49 282 137 HOH HOH . I 5 HOH A 50 283 138 HOH HOH . I 5 HOH A 51 284 140 HOH HOH . I 5 HOH A 52 285 141 HOH HOH . I 5 HOH A 53 286 143 HOH HOH . I 5 HOH A 54 287 150 HOH HOH . I 5 HOH A 55 288 157 HOH HOH . I 5 HOH A 56 289 158 HOH HOH . I 5 HOH A 57 290 159 HOH HOH . I 5 HOH A 58 291 161 HOH HOH . I 5 HOH A 59 292 168 HOH HOH . I 5 HOH A 60 293 173 HOH HOH . I 5 HOH A 61 294 182 HOH HOH . I 5 HOH A 62 295 183 HOH HOH . I 5 HOH A 63 296 191 HOH HOH . I 5 HOH A 64 297 210 HOH HOH . J 5 HOH B 1 236 1 HOH HOH . J 5 HOH B 2 237 3 HOH HOH . J 5 HOH B 3 238 5 HOH HOH . J 5 HOH B 4 239 6 HOH HOH . J 5 HOH B 5 240 7 HOH HOH . J 5 HOH B 6 241 8 HOH HOH . J 5 HOH B 7 242 9 HOH HOH . J 5 HOH B 8 243 12 HOH HOH . J 5 HOH B 9 244 13 HOH HOH . J 5 HOH B 10 245 14 HOH HOH . J 5 HOH B 11 246 16 HOH HOH . J 5 HOH B 12 247 17 HOH HOH . J 5 HOH B 13 248 20 HOH HOH . J 5 HOH B 14 249 21 HOH HOH . J 5 HOH B 15 250 22 HOH HOH . J 5 HOH B 16 251 25 HOH HOH . J 5 HOH B 17 252 28 HOH HOH . J 5 HOH B 18 253 29 HOH HOH . J 5 HOH B 19 254 30 HOH HOH . J 5 HOH B 20 255 32 HOH HOH . J 5 HOH B 21 256 33 HOH HOH . J 5 HOH B 22 257 39 HOH HOH . J 5 HOH B 23 258 40 HOH HOH . J 5 HOH B 24 259 41 HOH HOH . J 5 HOH B 25 260 42 HOH HOH . J 5 HOH B 26 261 44 HOH HOH . J 5 HOH B 27 262 45 HOH HOH . J 5 HOH B 28 263 46 HOH HOH . J 5 HOH B 29 264 48 HOH HOH . J 5 HOH B 30 265 51 HOH HOH . J 5 HOH B 31 266 52 HOH HOH . J 5 HOH B 32 267 53 HOH HOH . J 5 HOH B 33 268 55 HOH HOH . J 5 HOH B 34 269 56 HOH HOH . J 5 HOH B 35 270 57 HOH HOH . J 5 HOH B 36 271 58 HOH HOH . J 5 HOH B 37 272 59 HOH HOH . J 5 HOH B 38 273 61 HOH HOH . J 5 HOH B 39 274 63 HOH HOH . J 5 HOH B 40 275 68 HOH HOH . J 5 HOH B 41 276 69 HOH HOH . J 5 HOH B 42 277 71 HOH HOH . J 5 HOH B 43 278 72 HOH HOH . J 5 HOH B 44 279 75 HOH HOH . J 5 HOH B 45 280 77 HOH HOH . J 5 HOH B 46 281 84 HOH HOH . J 5 HOH B 47 282 85 HOH HOH . J 5 HOH B 48 283 86 HOH HOH . J 5 HOH B 49 284 87 HOH HOH . J 5 HOH B 50 285 88 HOH HOH . J 5 HOH B 51 286 91 HOH HOH . J 5 HOH B 52 287 92 HOH HOH . J 5 HOH B 53 288 93 HOH HOH . J 5 HOH B 54 289 94 HOH HOH . J 5 HOH B 55 290 96 HOH HOH . J 5 HOH B 56 291 98 HOH HOH . J 5 HOH B 57 292 100 HOH HOH . J 5 HOH B 58 293 103 HOH HOH . J 5 HOH B 59 294 104 HOH HOH . J 5 HOH B 60 295 105 HOH HOH . J 5 HOH B 61 296 106 HOH HOH . J 5 HOH B 62 297 108 HOH HOH . J 5 HOH B 63 298 109 HOH HOH . J 5 HOH B 64 299 110 HOH HOH . J 5 HOH B 65 300 111 HOH HOH . J 5 HOH B 66 301 113 HOH HOH . J 5 HOH B 67 302 115 HOH HOH . J 5 HOH B 68 303 116 HOH HOH . J 5 HOH B 69 304 124 HOH HOH . J 5 HOH B 70 305 125 HOH HOH . J 5 HOH B 71 306 126 HOH HOH . J 5 HOH B 72 307 130 HOH HOH . J 5 HOH B 73 308 145 HOH HOH . J 5 HOH B 74 309 149 HOH HOH . J 5 HOH B 75 310 151 HOH HOH . J 5 HOH B 76 311 153 HOH HOH . J 5 HOH B 77 312 155 HOH HOH . J 5 HOH B 78 313 160 HOH HOH . J 5 HOH B 79 314 162 HOH HOH . J 5 HOH B 80 315 163 HOH HOH . J 5 HOH B 81 316 166 HOH HOH . J 5 HOH B 82 317 167 HOH HOH . J 5 HOH B 83 318 169 HOH HOH . J 5 HOH B 84 319 170 HOH HOH . J 5 HOH B 85 320 172 HOH HOH . J 5 HOH B 86 321 180 HOH HOH . J 5 HOH B 87 322 188 HOH HOH . J 5 HOH B 88 323 190 HOH HOH . J 5 HOH B 89 324 208 HOH HOH . J 5 HOH B 90 325 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CB1 . . . E 4 -31.64 -7.4 -16.33 1 50.08 ? C CB1 233 A 1 HETATM 2 C C1 CB1 . . . E 4 -32.751 -8.023 -15.75 1 50.29 ? C1 CB1 233 A 1 HETATM 3 C C2 CB1 . . . E 4 -33.775 -7.21 -15.23 1 50.72 ? C2 CB1 233 A 1 HETATM 4 C C4 CB1 . . . E 4 -33.66 -5.824 -15.306 1 50.05 ? C4 CB1 233 A 1 HETATM 5 C C5 CB1 . . . E 4 -32.549 -5.205 -15.89 1 50.88 ? C5 CB1 233 A 1 HETATM 6 C C8 CB1 . . . E 4 -31.524 -6.001 -16.41 1 50.88 ? C8 CB1 233 A 1 HETATM 7 N N CB1 . . . E 4 -32.758 -9.37 -15.737 1 50.54 ? N CB1 233 A 1 HETATM 8 O O1 CB1 . . . E 4 -31.704 -10.115 -16.415 1 50.38 ? O1 CB1 233 A 1 HETATM 9 O O2 CB1 . . . E 4 -33.749 -10.14 -15.085 1 50.34 ? O2 CB1 233 A 1 HETATM 10 C C3 CB1 . . . E 4 -35.059 -7.739 -14.588 1 52.12 ? C3 CB1 233 A 1 HETATM 11 N N1 CB1 . . . E 4 -35.894 -6.815 -14.088 1 54.97 ? N1 CB1 233 A 1 HETATM 12 O O CB1 . . . E 4 -35.34 -8.929 -14.595 1 52.35 ? O CB1 233 A 1 HETATM 13 N N6 CB1 . . . E 4 -32.473 -3.867 -15.966 1 51.93 ? N6 CB1 233 A 1 HETATM 14 C C7 CB1 . . . E 4 -33.757 -3.14 -15.82 1 54.14 ? C7 CB1 233 A 1 HETATM 15 C C9 CB1 . . . E 4 -32.69 -3.088 -14.727 1 53.98 ? C9 CB1 233 A 1 HETATM 16 N N3 CB1 . . . E 4 -30.448 -5.471 -17.011 1 51.22 ? N3 CB1 233 A 1 HETATM 17 O O3 CB1 . . . E 4 -29.51 -6.301 -17.595 1 54.44 ? O3 CB1 233 A 1 HETATM 18 O O4 CB1 . . . E 4 -30.218 -4.105 -17.153 1 54.11 ? O4 CB1 233 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #