data_1ZXB # _model_server_result.job_id hqgUfJPT37RZAajssJXnlQ _model_server_result.datetime_utc '2024-11-14 23:42:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":450}' # _entry.id 1ZXB # _exptl.entry_id 1ZXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZXB _cell.length_a 131.427 _cell.length_b 131.427 _cell.length_c 82.948 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.427 131.427 41.474 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 1ZXB _atom_sites.fract_transf_matrix[1][1] 0.00761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 450 450 NAD NAD . D 3 TN3 A 1 500 500 TN3 TN3 . E 2 NAD B 1 451 451 NAD NAD . F 3 TN3 B 1 501 501 TN3 TN3 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 50.866 88.495 40.657 1 30.86 ? PA NAD 450 A 1 HETATM 2 O O1A NAD . . . C 2 52.378 88.385 40.648 1 37.48 ? O1A NAD 450 A 1 HETATM 3 O O2A NAD . . . C 2 50.102 88.693 41.94 1 33.99 ? O2A NAD 450 A 1 HETATM 4 O O5B NAD . . . C 2 50.199 87.167 40.071 1 36.71 ? O5B NAD 450 A 1 HETATM 5 C C5B NAD . . . C 2 50.571 86.714 38.789 1 39.19 ? C5B NAD 450 A 1 HETATM 6 C C4B NAD . . . C 2 50.884 85.269 39.03 1 39.67 ? C4B NAD 450 A 1 HETATM 7 O O4B NAD . . . C 2 50.894 84.552 37.804 1 39.97 ? O4B NAD 450 A 1 HETATM 8 C C3B NAD . . . C 2 52.267 85.104 39.658 1 45.9 ? C3B NAD 450 A 1 HETATM 9 O O3B NAD . . . C 2 52.154 84.556 40.981 1 42.93 ? O3B NAD 450 A 1 HETATM 10 C C2B NAD . . . C 2 52.945 84.108 38.747 1 44.94 ? C2B NAD 450 A 1 HETATM 11 O O2B NAD . . . C 2 53.681 83.116 39.461 1 48.89 ? O2B NAD 450 A 1 HETATM 12 C C1B NAD . . . C 2 51.718 83.453 38.164 1 44.69 ? C1B NAD 450 A 1 HETATM 13 N N9A NAD . . . C 2 52.073 82.475 37.117 1 47.13 ? N9A NAD 450 A 1 HETATM 14 C C8A NAD . . . C 2 52.806 82.683 35.996 1 46.29 ? C8A NAD 450 A 1 HETATM 15 N N7A NAD . . . C 2 52.931 81.52 35.298 1 43.14 ? N7A NAD 450 A 1 HETATM 16 C C5A NAD . . . C 2 52.273 80.558 35.989 1 43.49 ? C5A NAD 450 A 1 HETATM 17 C C6A NAD . . . C 2 52.039 79.206 35.812 1 42.2 ? C6A NAD 450 A 1 HETATM 18 N N6A NAD . . . C 2 52.539 78.605 34.713 1 43.34 ? N6A NAD 450 A 1 HETATM 19 N N1A NAD . . . C 2 51.308 78.526 36.743 1 43.99 ? N1A NAD 450 A 1 HETATM 20 C C2A NAD . . . C 2 50.802 79.132 37.849 1 43.44 ? C2A NAD 450 A 1 HETATM 21 N N3A NAD . . . C 2 50.993 80.449 38.09 1 40.51 ? N3A NAD 450 A 1 HETATM 22 C C4A NAD . . . C 2 51.709 81.195 37.197 1 41.59 ? C4A NAD 450 A 1 HETATM 23 O O3 NAD . . . C 2 50.487 89.679 39.6 1 32.86 ? O3 NAD 450 A 1 HETATM 24 P PN NAD . . . C 2 48.992 90.23 39.255 1 23.9 ? PN NAD 450 A 1 HETATM 25 O O1N NAD . . . C 2 48.176 90.248 40.518 1 27.27 ? O1N NAD 450 A 1 HETATM 26 O O2N NAD . . . C 2 49.127 91.485 38.44 1 29.19 ? O2N NAD 450 A 1 HETATM 27 O O5D NAD . . . C 2 48.417 89.095 38.265 1 25.29 ? O5D NAD 450 A 1 HETATM 28 C C5D NAD . . . C 2 47.064 88.662 38.346 1 25.33 ? C5D NAD 450 A 1 HETATM 29 C C4D NAD . . . C 2 46.382 88.876 36.999 1 26.85 ? C4D NAD 450 A 1 HETATM 30 O O4D NAD . . . C 2 45.939 90.232 36.866 1 27.31 ? O4D NAD 450 A 1 HETATM 31 C C3D NAD . . . C 2 47.334 88.635 35.848 1 28.17 ? C3D NAD 450 A 1 HETATM 32 O O3D NAD . . . C 2 46.685 87.844 34.867 1 22.01 ? O3D NAD 450 A 1 HETATM 33 C C2D NAD . . . C 2 47.589 90.016 35.281 1 31.39 ? C2D NAD 450 A 1 HETATM 34 O O2D NAD . . . C 2 47.903 89.899 33.898 1 35.55 ? O2D NAD 450 A 1 HETATM 35 C C1D NAD . . . C 2 46.29 90.739 35.57 1 23.66 ? C1D NAD 450 A 1 HETATM 36 N N1N NAD . . . C 2 46.341 92.204 35.632 1 23.01 ? N1N NAD 450 A 1 HETATM 37 C C2N NAD . . . C 2 47.102 92.849 36.541 1 26.02 ? C2N NAD 450 A 1 HETATM 38 C C3N NAD . . . C 2 47.121 94.243 36.618 1 20.09 ? C3N NAD 450 A 1 HETATM 39 C C7N NAD . . . C 2 47.989 94.945 37.614 1 24.14 ? C7N NAD 450 A 1 HETATM 40 O O7N NAD . . . C 2 48.356 96.211 37.418 1 26.68 ? O7N NAD 450 A 1 HETATM 41 N N7N NAD . . . C 2 48.395 94.343 38.639 1 20.82 ? N7N NAD 450 A 1 HETATM 42 C C4N NAD . . . C 2 46.325 94.98 35.753 1 22.9 ? C4N NAD 450 A 1 HETATM 43 C C5N NAD . . . C 2 45.538 94.303 34.829 1 23.08 ? C5N NAD 450 A 1 HETATM 44 C C6N NAD . . . C 2 45.56 92.908 34.799 1 24.68 ? C6N NAD 450 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 44 #