data_1ZXL # _model_server_result.job_id lxPi5bqdc5t0NHFNF4cGpg _model_server_result.datetime_utc '2025-03-05 18:55:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":450}' # _entry.id 1ZXL # _exptl.entry_id 1ZXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZXL _cell.length_a 131.455 _cell.length_b 131.455 _cell.length_c 82.536 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.455 131.455 41.268 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 278 n n PA O2A NAD sing 279 n n PA O5B NAD sing 280 n n PA O3 NAD sing 281 n n O2A HOA2 NAD sing 282 n n O5B C5B NAD sing 283 n n C5B C4B NAD sing 284 n n C5B H51A NAD sing 285 n n C5B H52A NAD sing 286 n n C4B O4B NAD sing 287 n n C4B C3B NAD sing 288 n n C4B H4B NAD sing 289 n n O4B C1B NAD sing 290 n n C3B O3B NAD sing 291 n n C3B C2B NAD sing 292 n n C3B H3B NAD sing 293 n n O3B HO3A NAD sing 294 n n C2B O2B NAD sing 295 n n C2B C1B NAD sing 296 n n C2B H2B NAD sing 297 n n O2B HO2A NAD sing 298 n n C1B N9A NAD sing 299 n n C1B H1B NAD sing 300 n n N9A C8A NAD sing 301 n y N9A C4A NAD sing 302 n y C8A N7A NAD doub 303 n y C8A H8A NAD sing 304 n n N7A C5A NAD sing 305 n y C5A C6A NAD sing 306 n y C5A C4A NAD doub 307 n y C6A N6A NAD sing 308 n n C6A N1A NAD doub 309 n y N6A H61A NAD sing 310 n n N6A H62A NAD sing 311 n n N1A C2A NAD sing 312 n y C2A N3A NAD doub 313 n y C2A H2A NAD sing 314 n n N3A C4A NAD sing 315 n y O3 PN NAD sing 316 n n PN O1N NAD doub 317 n n PN O2N NAD sing 318 n n PN O5D NAD sing 319 n n O5D C5D NAD sing 320 n n C5D C4D NAD sing 321 n n C5D H51N NAD sing 322 n n C5D H52N NAD sing 323 n n C4D O4D NAD sing 324 n n C4D C3D NAD sing 325 n n C4D H4D NAD sing 326 n n O4D C1D NAD sing 327 n n C3D O3D NAD sing 328 n n C3D C2D NAD sing 329 n n C3D H3D NAD sing 330 n n O3D HO3N NAD sing 331 n n C2D O2D NAD sing 332 n n C2D C1D NAD sing 333 n n C2D H2D NAD sing 334 n n O2D HO2N NAD sing 335 n n C1D N1N NAD sing 336 n n C1D H1D NAD sing 337 n n N1N C2N NAD sing 338 n y N1N C6N NAD doub 339 n y C2N C3N NAD doub 340 n y C2N H2N NAD sing 341 n n C3N C7N NAD sing 342 n n C3N C4N NAD sing 343 n y C7N O7N NAD doub 344 n n C7N N7N NAD sing 345 n n N7N H71N NAD sing 346 n n N7N H72N NAD sing 347 n n C4N C5N NAD doub 348 n y C4N H4N NAD sing 349 n n C5N C6N NAD sing 350 n y C5N H5N NAD sing 351 n n C6N H6N NAD sing 352 n n # _atom_sites.entry_id 1ZXL _atom_sites.fract_transf_matrix[1][1] 0.00761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 450 450 NAD NAD . D 3 JP1 A 1 500 500 JP1 JP1 . E 2 NAD B 1 451 451 NAD NAD . F 3 JP1 B 1 501 501 JP1 JP1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 2 51.528 88.24 40.234 1 36.91 ? PA NAD 450 A 1 HETATM 2 O O1A NAD . . . C 2 53.053 88.2 40.268 1 35.86 ? O1A NAD 450 A 1 HETATM 3 O O2A NAD . . . C 2 50.74 87.948 41.487 1 35.27 ? O2A NAD 450 A 1 HETATM 4 O O5B NAD . . . C 2 50.934 87.157 39.203 1 38.63 ? O5B NAD 450 A 1 HETATM 5 C C5B NAD . . . C 2 51.751 86.326 38.41 1 35.49 ? C5B NAD 450 A 1 HETATM 6 C C4B NAD . . . C 2 51.668 84.997 39.108 1 39.2 ? C4B NAD 450 A 1 HETATM 7 O O4B NAD . . . C 2 51.556 83.973 38.131 1 38.63 ? O4B NAD 450 A 1 HETATM 8 C C3B NAD . . . C 2 52.971 84.783 39.868 1 41.9 ? C3B NAD 450 A 1 HETATM 9 O O3B NAD . . . C 2 52.677 84.17 41.136 1 45.02 ? O3B NAD 450 A 1 HETATM 10 C C2B NAD . . . C 2 53.768 83.824 39.015 1 38.4 ? C2B NAD 450 A 1 HETATM 11 O O2B NAD . . . C 2 54.642 83.06 39.87 1 37.23 ? O2B NAD 450 A 1 HETATM 12 C C1B NAD . . . C 2 52.601 83.032 38.413 1 32.8 ? C1B NAD 450 A 1 HETATM 13 N N9A NAD . . . C 2 52.911 82.173 37.243 1 30.25 ? N9A NAD 450 A 1 HETATM 14 C C8A NAD . . . C 2 53.585 82.488 36.12 1 29.63 ? C8A NAD 450 A 1 HETATM 15 N N7A NAD . . . C 2 53.641 81.408 35.295 1 29.24 ? N7A NAD 450 A 1 HETATM 16 C C5A NAD . . . C 2 52.996 80.383 35.9 1 28.4 ? C5A NAD 450 A 1 HETATM 17 C C6A NAD . . . C 2 52.714 79.063 35.606 1 24.41 ? C6A NAD 450 A 1 HETATM 18 N N6A NAD . . . C 2 53.122 78.514 34.45 1 26.03 ? N6A NAD 450 A 1 HETATM 19 N N1A NAD . . . C 2 52.014 78.33 36.491 1 27.55 ? N1A NAD 450 A 1 HETATM 20 C C2A NAD . . . C 2 51.575 78.822 37.663 1 28.27 ? C2A NAD 450 A 1 HETATM 21 N N3A NAD . . . C 2 51.808 80.088 38.026 1 25.45 ? N3A NAD 450 A 1 HETATM 22 C C4A NAD . . . C 2 52.508 80.901 37.186 1 29.7 ? C4A NAD 450 A 1 HETATM 23 O O3 NAD . . . C 2 50.992 89.636 39.561 1 33.26 ? O3 NAD 450 A 1 HETATM 24 P PN NAD . . . C 2 49.429 90.082 39.302 1 26.74 ? PN NAD 450 A 1 HETATM 25 O O1N NAD . . . C 2 49.471 91.517 38.804 1 14.19 ? O1N NAD 450 A 1 HETATM 26 O O2N NAD . . . C 2 48.601 89.623 40.496 1 18.26 ? O2N NAD 450 A 1 HETATM 27 O O5D NAD . . . C 2 48.907 89.233 38.035 1 16.29 ? O5D NAD 450 A 1 HETATM 28 C C5D NAD . . . C 2 47.665 88.526 38.11 1 15.9 ? C5D NAD 450 A 1 HETATM 29 C C4D NAD . . . C 2 46.867 88.721 36.823 1 20.58 ? C4D NAD 450 A 1 HETATM 30 O O4D NAD . . . C 2 46.322 90.054 36.765 1 22.52 ? O4D NAD 450 A 1 HETATM 31 C C3D NAD . . . C 2 47.73 88.534 35.576 1 20.08 ? C3D NAD 450 A 1 HETATM 32 O O3D NAD . . . C 2 47.044 87.71 34.632 1 19.44 ? O3D NAD 450 A 1 HETATM 33 C C2D NAD . . . C 2 47.886 89.928 35.006 1 21.05 ? C2D NAD 450 A 1 HETATM 34 O O2D NAD . . . C 2 48.026 89.801 33.593 1 18.08 ? O2D NAD 450 A 1 HETATM 35 C C1D NAD . . . C 2 46.617 90.655 35.485 1 20.14 ? C1D NAD 450 A 1 HETATM 36 N N1N NAD . . . C 2 46.68 92.132 35.627 1 18.92 ? N1N NAD 450 A 1 HETATM 37 C C2N NAD . . . C 2 47.542 92.742 36.475 1 23.14 ? C2N NAD 450 A 1 HETATM 38 C C3N NAD . . . C 2 47.584 94.141 36.616 1 23.79 ? C3N NAD 450 A 1 HETATM 39 C C7N NAD . . . C 2 48.56 94.841 37.552 1 26.34 ? C7N NAD 450 A 1 HETATM 40 O O7N NAD . . . C 2 49.218 95.924 37.137 1 36.49 ? O7N NAD 450 A 1 HETATM 41 N N7N NAD . . . C 2 48.786 94.44 38.735 1 28.52 ? N7N NAD 450 A 1 HETATM 42 C C4N NAD . . . C 2 46.699 94.894 35.855 1 20.01 ? C4N NAD 450 A 1 HETATM 43 C C5N NAD . . . C 2 45.817 94.257 34.984 1 20.3 ? C5N NAD 450 A 1 HETATM 44 C C6N NAD . . . C 2 45.825 92.87 34.899 1 20.22 ? C6N NAD 450 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #