data_1ZY4
#
_model_server_result.job_id            UXf5O5ZzuUzZqaiDS1CidQ 
_model_server_result.datetime_utc      '2024-11-25 04:36:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1zy4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":998}' 
#
_entry.id    1ZY4 
#
_exptl.entry_id    1ZY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ZY4 
_cell.length_a            52.833 
_cell.length_b            79.257 
_cell.length_c            146.863 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ZY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1ZY4 
_atom_sites.fract_transf_matrix[1][1]    0.018928 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012617 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 998 998 GOL GOL . 
D 2 GOL B 1 998 998 GOL GOL . 
E 3 HOH A 1 1 1 HOH HOH . 
E 3 HOH A 2 3 3 HOH HOH . 
E 3 HOH A 3 4 4 HOH HOH . 
E 3 HOH A 4 5 5 HOH HOH . 
E 3 HOH A 5 6 6 HOH HOH . 
E 3 HOH A 6 7 7 HOH HOH . 
E 3 HOH A 7 8 8 HOH HOH . 
E 3 HOH A 8 9 9 HOH HOH . 
E 3 HOH A 9 10 10 HOH HOH . 
E 3 HOH A 10 11 11 HOH HOH . 
E 3 HOH A 11 12 12 HOH HOH . 
E 3 HOH A 12 13 13 HOH HOH . 
E 3 HOH A 13 14 14 HOH HOH . 
E 3 HOH A 14 15 15 HOH HOH . 
E 3 HOH A 15 16 16 HOH HOH . 
E 3 HOH A 16 17 17 HOH HOH . 
E 3 HOH A 17 18 18 HOH HOH . 
E 3 HOH A 18 19 19 HOH HOH . 
E 3 HOH A 19 20 20 HOH HOH . 
E 3 HOH A 20 21 21 HOH HOH . 
E 3 HOH A 21 22 22 HOH HOH . 
E 3 HOH A 22 23 23 HOH HOH . 
E 3 HOH A 23 24 24 HOH HOH . 
E 3 HOH A 24 27 27 HOH HOH . 
E 3 HOH A 25 28 28 HOH HOH . 
E 3 HOH A 26 29 29 HOH HOH . 
E 3 HOH A 27 31 31 HOH HOH . 
E 3 HOH A 28 32 32 HOH HOH . 
E 3 HOH A 29 33 33 HOH HOH . 
E 3 HOH A 30 34 34 HOH HOH . 
E 3 HOH A 31 35 35 HOH HOH . 
E 3 HOH A 32 36 36 HOH HOH . 
E 3 HOH A 33 37 37 HOH HOH . 
E 3 HOH A 34 38 38 HOH HOH . 
E 3 HOH A 35 39 39 HOH HOH . 
E 3 HOH A 36 40 40 HOH HOH . 
E 3 HOH A 37 41 41 HOH HOH . 
E 3 HOH A 38 42 42 HOH HOH . 
E 3 HOH A 39 43 43 HOH HOH . 
E 3 HOH A 40 44 44 HOH HOH . 
E 3 HOH A 41 45 45 HOH HOH . 
E 3 HOH A 42 46 46 HOH HOH . 
E 3 HOH A 43 47 47 HOH HOH . 
E 3 HOH A 44 48 48 HOH HOH . 
E 3 HOH A 45 49 49 HOH HOH . 
E 3 HOH A 46 51 51 HOH HOH . 
E 3 HOH A 47 53 53 HOH HOH . 
E 3 HOH A 48 54 54 HOH HOH . 
E 3 HOH A 49 56 56 HOH HOH . 
E 3 HOH A 50 57 57 HOH HOH . 
E 3 HOH A 51 59 59 HOH HOH . 
E 3 HOH A 52 60 60 HOH HOH . 
E 3 HOH A 53 61 61 HOH HOH . 
E 3 HOH A 54 63 63 HOH HOH . 
E 3 HOH A 55 64 64 HOH HOH . 
E 3 HOH A 56 65 65 HOH HOH . 
E 3 HOH A 57 67 67 HOH HOH . 
E 3 HOH A 58 68 68 HOH HOH . 
E 3 HOH A 59 69 69 HOH HOH . 
E 3 HOH A 60 70 70 HOH HOH . 
E 3 HOH A 61 71 71 HOH HOH . 
E 3 HOH A 62 74 74 HOH HOH . 
E 3 HOH A 63 75 75 HOH HOH . 
E 3 HOH A 64 77 77 HOH HOH . 
E 3 HOH A 65 78 78 HOH HOH . 
E 3 HOH A 66 79 79 HOH HOH . 
E 3 HOH A 67 80 80 HOH HOH . 
E 3 HOH A 68 81 81 HOH HOH . 
E 3 HOH A 69 82 82 HOH HOH . 
E 3 HOH A 70 83 83 HOH HOH . 
E 3 HOH A 71 84 84 HOH HOH . 
E 3 HOH A 72 86 86 HOH HOH . 
E 3 HOH A 73 88 88 HOH HOH . 
E 3 HOH A 74 89 89 HOH HOH . 
E 3 HOH A 75 90 90 HOH HOH . 
E 3 HOH A 76 92 92 HOH HOH . 
E 3 HOH A 77 94 94 HOH HOH . 
E 3 HOH A 78 95 95 HOH HOH . 
E 3 HOH A 79 96 96 HOH HOH . 
E 3 HOH A 80 97 97 HOH HOH . 
E 3 HOH A 81 100 100 HOH HOH . 
E 3 HOH A 82 101 101 HOH HOH . 
E 3 HOH A 83 102 102 HOH HOH . 
E 3 HOH A 84 103 103 HOH HOH . 
E 3 HOH A 85 104 104 HOH HOH . 
E 3 HOH A 86 105 105 HOH HOH . 
E 3 HOH A 87 106 106 HOH HOH . 
E 3 HOH A 88 107 107 HOH HOH . 
E 3 HOH A 89 108 108 HOH HOH . 
E 3 HOH A 90 109 109 HOH HOH . 
E 3 HOH A 91 112 112 HOH HOH . 
E 3 HOH A 92 114 114 HOH HOH . 
E 3 HOH A 93 116 116 HOH HOH . 
E 3 HOH A 94 117 117 HOH HOH . 
E 3 HOH A 95 118 118 HOH HOH . 
E 3 HOH A 96 119 119 HOH HOH . 
E 3 HOH A 97 121 121 HOH HOH . 
E 3 HOH A 98 122 122 HOH HOH . 
E 3 HOH A 99 125 125 HOH HOH . 
E 3 HOH A 100 126 126 HOH HOH . 
E 3 HOH A 101 127 127 HOH HOH . 
E 3 HOH A 102 128 128 HOH HOH . 
E 3 HOH A 103 130 130 HOH HOH . 
E 3 HOH A 104 132 132 HOH HOH . 
E 3 HOH A 105 133 133 HOH HOH . 
E 3 HOH A 106 137 137 HOH HOH . 
E 3 HOH A 107 138 138 HOH HOH . 
E 3 HOH A 108 140 140 HOH HOH . 
E 3 HOH A 109 142 142 HOH HOH . 
E 3 HOH A 110 146 146 HOH HOH . 
E 3 HOH A 111 147 147 HOH HOH . 
E 3 HOH A 112 150 150 HOH HOH . 
E 3 HOH A 113 151 151 HOH HOH . 
E 3 HOH A 114 152 152 HOH HOH . 
E 3 HOH A 115 154 154 HOH HOH . 
E 3 HOH A 116 158 158 HOH HOH . 
E 3 HOH A 117 159 159 HOH HOH . 
E 3 HOH A 118 161 161 HOH HOH . 
E 3 HOH A 119 162 162 HOH HOH . 
E 3 HOH A 120 164 164 HOH HOH . 
E 3 HOH A 121 165 165 HOH HOH . 
E 3 HOH A 122 166 166 HOH HOH . 
E 3 HOH A 123 167 167 HOH HOH . 
E 3 HOH A 124 170 170 HOH HOH . 
E 3 HOH A 125 174 174 HOH HOH . 
E 3 HOH A 126 178 178 HOH HOH . 
E 3 HOH A 127 179 179 HOH HOH . 
E 3 HOH A 128 184 184 HOH HOH . 
E 3 HOH A 129 185 185 HOH HOH . 
E 3 HOH A 130 187 187 HOH HOH . 
E 3 HOH A 131 188 188 HOH HOH . 
E 3 HOH A 132 189 189 HOH HOH . 
E 3 HOH A 133 190 190 HOH HOH . 
E 3 HOH A 134 192 192 HOH HOH . 
E 3 HOH A 135 193 193 HOH HOH . 
E 3 HOH A 136 194 194 HOH HOH . 
E 3 HOH A 137 197 197 HOH HOH . 
E 3 HOH A 138 198 198 HOH HOH . 
E 3 HOH A 139 199 199 HOH HOH . 
E 3 HOH A 140 200 200 HOH HOH . 
E 3 HOH A 141 201 201 HOH HOH . 
E 3 HOH A 142 202 202 HOH HOH . 
E 3 HOH A 143 203 203 HOH HOH . 
E 3 HOH A 144 204 204 HOH HOH . 
E 3 HOH A 145 205 205 HOH HOH . 
E 3 HOH A 146 206 206 HOH HOH . 
E 3 HOH A 147 207 207 HOH HOH . 
E 3 HOH A 148 208 208 HOH HOH . 
E 3 HOH A 149 209 209 HOH HOH . 
E 3 HOH A 150 210 210 HOH HOH . 
E 3 HOH A 151 212 212 HOH HOH . 
E 3 HOH A 152 214 214 HOH HOH . 
E 3 HOH A 153 217 217 HOH HOH . 
E 3 HOH A 154 218 218 HOH HOH . 
E 3 HOH A 155 219 219 HOH HOH . 
E 3 HOH A 156 220 220 HOH HOH . 
E 3 HOH A 157 221 221 HOH HOH . 
E 3 HOH A 158 222 222 HOH HOH . 
E 3 HOH A 159 223 223 HOH HOH . 
E 3 HOH A 160 224 224 HOH HOH . 
E 3 HOH A 161 225 225 HOH HOH . 
E 3 HOH A 162 230 230 HOH HOH . 
E 3 HOH A 163 231 231 HOH HOH . 
F 3 HOH B 1 2 2 HOH HOH . 
F 3 HOH B 2 25 25 HOH HOH . 
F 3 HOH B 3 26 26 HOH HOH . 
F 3 HOH B 4 30 30 HOH HOH . 
F 3 HOH B 5 50 50 HOH HOH . 
F 3 HOH B 6 52 52 HOH HOH . 
F 3 HOH B 7 55 55 HOH HOH . 
F 3 HOH B 8 58 58 HOH HOH . 
F 3 HOH B 9 62 62 HOH HOH . 
F 3 HOH B 10 66 66 HOH HOH . 
F 3 HOH B 11 72 72 HOH HOH . 
F 3 HOH B 12 73 73 HOH HOH . 
F 3 HOH B 13 76 76 HOH HOH . 
F 3 HOH B 14 85 85 HOH HOH . 
F 3 HOH B 15 87 87 HOH HOH . 
F 3 HOH B 16 91 91 HOH HOH . 
F 3 HOH B 17 93 93 HOH HOH . 
F 3 HOH B 18 98 98 HOH HOH . 
F 3 HOH B 19 99 99 HOH HOH . 
F 3 HOH B 20 110 110 HOH HOH . 
F 3 HOH B 21 111 111 HOH HOH . 
F 3 HOH B 22 113 113 HOH HOH . 
F 3 HOH B 23 115 115 HOH HOH . 
F 3 HOH B 24 120 120 HOH HOH . 
F 3 HOH B 25 123 123 HOH HOH . 
F 3 HOH B 26 124 124 HOH HOH . 
F 3 HOH B 27 129 129 HOH HOH . 
F 3 HOH B 28 131 131 HOH HOH . 
F 3 HOH B 29 134 134 HOH HOH . 
F 3 HOH B 30 135 135 HOH HOH . 
F 3 HOH B 31 136 136 HOH HOH . 
F 3 HOH B 32 139 139 HOH HOH . 
F 3 HOH B 33 141 141 HOH HOH . 
F 3 HOH B 34 143 143 HOH HOH . 
F 3 HOH B 35 144 144 HOH HOH . 
F 3 HOH B 36 145 145 HOH HOH . 
F 3 HOH B 37 148 148 HOH HOH . 
F 3 HOH B 38 149 149 HOH HOH . 
F 3 HOH B 39 153 153 HOH HOH . 
F 3 HOH B 40 155 155 HOH HOH . 
F 3 HOH B 41 156 156 HOH HOH . 
F 3 HOH B 42 157 157 HOH HOH . 
F 3 HOH B 43 160 160 HOH HOH . 
F 3 HOH B 44 163 163 HOH HOH . 
F 3 HOH B 45 168 168 HOH HOH . 
F 3 HOH B 46 169 169 HOH HOH . 
F 3 HOH B 47 171 171 HOH HOH . 
F 3 HOH B 48 172 172 HOH HOH . 
F 3 HOH B 49 173 173 HOH HOH . 
F 3 HOH B 50 175 175 HOH HOH . 
F 3 HOH B 51 176 176 HOH HOH . 
F 3 HOH B 52 177 177 HOH HOH . 
F 3 HOH B 53 180 180 HOH HOH . 
F 3 HOH B 54 181 181 HOH HOH . 
F 3 HOH B 55 182 182 HOH HOH . 
F 3 HOH B 56 183 183 HOH HOH . 
F 3 HOH B 57 186 186 HOH HOH . 
F 3 HOH B 58 191 191 HOH HOH . 
F 3 HOH B 59 195 195 HOH HOH . 
F 3 HOH B 60 196 196 HOH HOH . 
F 3 HOH B 61 211 211 HOH HOH . 
F 3 HOH B 62 213 213 HOH HOH . 
F 3 HOH B 63 215 215 HOH HOH . 
F 3 HOH B 64 216 216 HOH HOH . 
F 3 HOH B 65 226 226 HOH HOH . 
F 3 HOH B 66 227 227 HOH HOH . 
F 3 HOH B 67 228 228 HOH HOH . 
F 3 HOH B 68 229 229 HOH HOH . 
F 3 HOH B 69 232 232 HOH HOH . 
F 3 HOH B 70 233 233 HOH HOH . 
F 3 HOH B 71 234 234 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 3.449 29.795 45.825 1 70.38 ? C1 GOL 998 B 1 
HETATM 2 O O1 GOL . . . D 2 4.187 28.859 46.906 1 66.4 ? O1 GOL 998 B 1 
HETATM 3 C C2 GOL . . . D 2 2.156 29.611 45.333 1 69.07 ? C2 GOL 998 B 1 
HETATM 4 O O2 GOL . . . D 2 1.248 30.223 46.113 1 62.41 ? O2 GOL 998 B 1 
HETATM 5 C C3 GOL . . . D 2 2.195 28.926 44.332 1 67.8 ? C3 GOL 998 B 1 
HETATM 6 O O3 GOL . . . D 2 2.778 28.087 43.146 1 71.88 ? O3 GOL 998 B 1 
#
_model_server_stats.io_time_ms              102 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#