data_1ZYJ # _model_server_result.job_id 2m2D3MWiR7dnjkcG918GTw _model_server_result.datetime_utc '2024-12-09 22:26:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 1ZYJ # _exptl.entry_id 1ZYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZYJ _cell.length_a 67.76 _cell.length_b 70.92 _cell.length_c 75.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 111 n n C1 C2 BOG sing 112 n n C1 O5 BOG sing 113 n n C1 H1 BOG sing 114 n n O1 C1' BOG sing 115 n n C2 O2 BOG sing 116 n n C2 C3 BOG sing 117 n n C2 H2 BOG sing 118 n n O2 HO2 BOG sing 119 n n C3 O3 BOG sing 120 n n C3 C4 BOG sing 121 n n C3 H3 BOG sing 122 n n O3 HO3 BOG sing 123 n n C4 O4 BOG sing 124 n n C4 C5 BOG sing 125 n n C4 H4 BOG sing 126 n n O4 HO4 BOG sing 127 n n C5 O5 BOG sing 128 n n C5 C6 BOG sing 129 n n C5 H5 BOG sing 130 n n C6 O6 BOG sing 131 n n C6 H61 BOG sing 132 n n C6 H62 BOG sing 133 n n O6 HO6 BOG sing 134 n n C1' C2' BOG sing 135 n n C1' "H1'1" BOG sing 136 n n C1' "H1'2" BOG sing 137 n n C2' C3' BOG sing 138 n n C2' "H2'1" BOG sing 139 n n C2' "H2'2" BOG sing 140 n n C3' C4' BOG sing 141 n n C3' "H3'1" BOG sing 142 n n C3' "H3'2" BOG sing 143 n n C4' C5' BOG sing 144 n n C4' "H4'1" BOG sing 145 n n C4' "H4'2" BOG sing 146 n n C5' C6' BOG sing 147 n n C5' "H5'1" BOG sing 148 n n C5' "H5'2" BOG sing 149 n n C6' C7' BOG sing 150 n n C6' "H6'1" BOG sing 151 n n C6' "H6'2" BOG sing 152 n n C7' C8' BOG sing 153 n n C7' "H7'1" BOG sing 154 n n C7' "H7'2" BOG sing 155 n n C8' "H8'1" BOG sing 156 n n C8' "H8'2" BOG sing 157 n n C8' "H8'3" BOG sing 158 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1ZYJ _atom_sites.fract_transf_matrix[1][1] 0.014758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 361 1 BOG DTR . C 3 BI5 A 1 362 1 BI5 BI4 . D 4 HOH A 1 363 1 HOH HOH . D 4 HOH A 2 364 2 HOH HOH . D 4 HOH A 3 365 3 HOH HOH . D 4 HOH A 4 366 4 HOH HOH . D 4 HOH A 5 367 5 HOH HOH . D 4 HOH A 6 368 6 HOH HOH . D 4 HOH A 7 369 7 HOH HOH . D 4 HOH A 8 370 8 HOH HOH . D 4 HOH A 9 371 9 HOH HOH . D 4 HOH A 10 372 10 HOH HOH . D 4 HOH A 11 373 11 HOH HOH . D 4 HOH A 12 374 12 HOH HOH . D 4 HOH A 13 375 13 HOH HOH . D 4 HOH A 14 376 14 HOH HOH . D 4 HOH A 15 377 15 HOH HOH . D 4 HOH A 16 378 16 HOH HOH . D 4 HOH A 17 379 17 HOH HOH . D 4 HOH A 18 380 18 HOH HOH . D 4 HOH A 19 381 19 HOH HOH . D 4 HOH A 20 382 20 HOH HOH . D 4 HOH A 21 383 21 HOH HOH . D 4 HOH A 22 384 22 HOH HOH . D 4 HOH A 23 385 23 HOH HOH . D 4 HOH A 24 386 24 HOH HOH . D 4 HOH A 25 387 25 HOH HOH . D 4 HOH A 26 388 26 HOH HOH . D 4 HOH A 27 389 27 HOH HOH . D 4 HOH A 28 390 28 HOH HOH . D 4 HOH A 29 391 29 HOH HOH . D 4 HOH A 30 392 30 HOH HOH . D 4 HOH A 31 393 31 HOH HOH . D 4 HOH A 32 394 32 HOH HOH . D 4 HOH A 33 395 33 HOH HOH . D 4 HOH A 34 396 34 HOH HOH . D 4 HOH A 35 397 35 HOH HOH . D 4 HOH A 36 398 36 HOH HOH . D 4 HOH A 37 399 37 HOH HOH . D 4 HOH A 38 400 38 HOH HOH . D 4 HOH A 39 401 39 HOH HOH . D 4 HOH A 40 402 40 HOH HOH . D 4 HOH A 41 403 41 HOH HOH . D 4 HOH A 42 404 42 HOH HOH . D 4 HOH A 43 405 43 HOH HOH . D 4 HOH A 44 406 44 HOH HOH . D 4 HOH A 45 407 45 HOH HOH . D 4 HOH A 46 408 46 HOH HOH . D 4 HOH A 47 409 47 HOH HOH . D 4 HOH A 48 410 48 HOH HOH . D 4 HOH A 49 411 49 HOH HOH . D 4 HOH A 50 412 50 HOH HOH . D 4 HOH A 51 413 51 HOH HOH . D 4 HOH A 52 414 52 HOH HOH . D 4 HOH A 53 415 53 HOH HOH . D 4 HOH A 54 416 54 HOH HOH . D 4 HOH A 55 417 55 HOH HOH . D 4 HOH A 56 418 56 HOH HOH . D 4 HOH A 57 419 57 HOH HOH . D 4 HOH A 58 420 58 HOH HOH . D 4 HOH A 59 421 59 HOH HOH . D 4 HOH A 60 422 60 HOH HOH . D 4 HOH A 61 423 61 HOH HOH . D 4 HOH A 62 424 62 HOH HOH . D 4 HOH A 63 425 63 HOH HOH . D 4 HOH A 64 426 64 HOH HOH . D 4 HOH A 65 427 65 HOH HOH . D 4 HOH A 66 428 66 HOH HOH . D 4 HOH A 67 429 67 HOH HOH . D 4 HOH A 68 430 68 HOH HOH . D 4 HOH A 69 431 69 HOH HOH . D 4 HOH A 70 432 70 HOH HOH . D 4 HOH A 71 433 71 HOH HOH . D 4 HOH A 72 434 72 HOH HOH . D 4 HOH A 73 435 73 HOH HOH . D 4 HOH A 74 436 74 HOH HOH . D 4 HOH A 75 437 75 HOH HOH . D 4 HOH A 76 438 76 HOH HOH . D 4 HOH A 77 439 77 HOH HOH . D 4 HOH A 78 440 78 HOH HOH . D 4 HOH A 79 441 79 HOH HOH . D 4 HOH A 80 442 80 HOH HOH . D 4 HOH A 81 443 81 HOH HOH . D 4 HOH A 82 444 82 HOH HOH . D 4 HOH A 83 445 83 HOH HOH . D 4 HOH A 84 446 84 HOH HOH . D 4 HOH A 85 447 85 HOH HOH . D 4 HOH A 86 448 86 HOH HOH . D 4 HOH A 87 449 87 HOH HOH . D 4 HOH A 88 450 88 HOH HOH . D 4 HOH A 89 451 89 HOH HOH . D 4 HOH A 90 452 90 HOH HOH . D 4 HOH A 91 453 91 HOH HOH . D 4 HOH A 92 454 92 HOH HOH . D 4 HOH A 93 455 93 HOH HOH . D 4 HOH A 94 456 94 HOH HOH . D 4 HOH A 95 457 95 HOH HOH . D 4 HOH A 96 458 96 HOH HOH . D 4 HOH A 97 459 97 HOH HOH . D 4 HOH A 98 460 98 HOH HOH . D 4 HOH A 99 461 99 HOH HOH . D 4 HOH A 100 462 100 HOH HOH . D 4 HOH A 101 463 101 HOH HOH . D 4 HOH A 102 464 102 HOH HOH . D 4 HOH A 103 465 103 HOH HOH . D 4 HOH A 104 466 104 HOH HOH . D 4 HOH A 105 467 105 HOH HOH . D 4 HOH A 106 468 106 HOH HOH . D 4 HOH A 107 469 107 HOH HOH . D 4 HOH A 108 470 108 HOH HOH . D 4 HOH A 109 471 109 HOH HOH . D 4 HOH A 110 472 110 HOH HOH . D 4 HOH A 111 473 111 HOH HOH . D 4 HOH A 112 474 112 HOH HOH . D 4 HOH A 113 475 113 HOH HOH . D 4 HOH A 114 476 114 HOH HOH . D 4 HOH A 115 477 115 HOH HOH . D 4 HOH A 116 478 117 HOH HOH . D 4 HOH A 117 479 118 HOH HOH . D 4 HOH A 118 480 119 HOH HOH . D 4 HOH A 119 481 120 HOH HOH . D 4 HOH A 120 482 121 HOH HOH . D 4 HOH A 121 483 122 HOH HOH . D 4 HOH A 122 484 123 HOH HOH . D 4 HOH A 123 485 124 HOH HOH . D 4 HOH A 124 486 125 HOH HOH . D 4 HOH A 125 487 126 HOH HOH . D 4 HOH A 126 488 127 HOH HOH . D 4 HOH A 127 489 128 HOH HOH . D 4 HOH A 128 490 129 HOH HOH . D 4 HOH A 129 491 130 HOH HOH . D 4 HOH A 130 492 131 HOH HOH . D 4 HOH A 131 493 132 HOH HOH . D 4 HOH A 132 494 133 HOH HOH . D 4 HOH A 133 495 134 HOH HOH . D 4 HOH A 134 496 135 HOH HOH . D 4 HOH A 135 497 136 HOH HOH . D 4 HOH A 136 498 137 HOH HOH . D 4 HOH A 137 499 138 HOH HOH . D 4 HOH A 138 500 139 HOH HOH . D 4 HOH A 139 501 140 HOH HOH . D 4 HOH A 140 502 141 HOH HOH . D 4 HOH A 141 503 142 HOH HOH . D 4 HOH A 142 504 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 28.539 24.369 -7.19 1 51.34 ? C1 BOG 361 A 1 HETATM 2 O O1 BOG . . . B 2 27.978 25.632 -7.546 1 51.12 ? O1 BOG 361 A 1 HETATM 3 C C2 BOG . . . B 2 27.69 23.6 -6.167 1 52.51 ? C2 BOG 361 A 1 HETATM 4 O O2 BOG . . . B 2 26.616 23.115 -6.79 1 51.36 ? O2 BOG 361 A 1 HETATM 5 C C3 BOG . . . B 2 28.532 22.441 -5.607 1 52.5 ? C3 BOG 361 A 1 HETATM 6 O O3 BOG . . . B 2 27.782 21.445 -5.166 1 52.36 ? O3 BOG 361 A 1 HETATM 7 C C4 BOG . . . B 2 29.56 21.998 -6.639 1 53.15 ? C4 BOG 361 A 1 HETATM 8 O O4 BOG . . . B 2 30.179 20.894 -6.221 1 52.44 ? O4 BOG 361 A 1 HETATM 9 C C5 BOG . . . B 2 30.598 23.134 -6.814 1 53.57 ? C5 BOG 361 A 1 HETATM 10 O O5 BOG . . . B 2 29.925 24.408 -6.819 1 53.37 ? O5 BOG 361 A 1 HETATM 11 C C6 BOG . . . B 2 31.618 23.096 -5.676 1 54.76 ? C6 BOG 361 A 1 HETATM 12 O O6 BOG . . . B 2 32.578 23.986 -5.862 1 53.77 ? O6 BOG 361 A 1 HETATM 13 C C1' BOG . . . B 2 28.601 26.725 -6.904 1 50.45 ? C1' BOG 361 A 1 HETATM 14 C C2' BOG . . . B 2 27.679 27.916 -6.756 1 50.79 ? C2' BOG 361 A 1 HETATM 15 C C3' BOG . . . B 2 28.409 29.061 -6.104 1 50.68 ? C3' BOG 361 A 1 HETATM 16 C C4' BOG . . . B 2 27.532 30.282 -5.941 1 50.91 ? C4' BOG 361 A 1 HETATM 17 C C5' BOG . . . B 2 28.259 31.324 -5.111 1 52.54 ? C5' BOG 361 A 1 HETATM 18 C C6' BOG . . . B 2 27.509 32.646 -5.033 1 53.21 ? C6' BOG 361 A 1 HETATM 19 C C7' BOG . . . B 2 26.122 32.467 -4.463 1 52.94 ? C7' BOG 361 A 1 HETATM 20 C C8' BOG . . . B 2 26.118 31.69 -3.181 1 52.93 ? C8' BOG 361 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #