data_1ZYJ # _model_server_result.job_id hm741hN78WGCiDOLr9tFzA _model_server_result.datetime_utc '2024-10-20 20:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1zyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 1ZYJ # _exptl.entry_id 1ZYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.343 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-PHENOXY-N-(PYRIDIN-2-YLMETHYL)BENZAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ZYJ _cell.length_a 67.76 _cell.length_b 70.92 _cell.length_c 75.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H16 N2 O2' _chem_comp.formula_weight 304.343 _chem_comp.id BI5 _chem_comp.mon_nstd_flag . _chem_comp.name 4-PHENOXY-N-(PYRIDIN-2-YLMETHYL)BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 BI5 doub 70 n y N1 C5 BI5 sing 71 n y C1 C2 BI5 sing 72 n y C1 C6 BI5 sing 73 n n C2 C3 BI5 doub 74 n y C2 H2 BI5 sing 75 n n C3 C4 BI5 sing 76 n y C3 H3 BI5 sing 77 n n C4 C5 BI5 doub 78 n y C4 H4 BI5 sing 79 n n C5 H5 BI5 sing 80 n n C6 N2 BI5 sing 81 n n C6 H61 BI5 sing 82 n n C6 H62 BI5 sing 83 n n N2 C7 BI5 sing 84 n n N2 HN2 BI5 sing 85 n n C7 C8 BI5 sing 86 n n C7 O2 BI5 doub 87 n n C8 C9 BI5 doub 88 n y C8 C13 BI5 sing 89 n y C9 C10 BI5 sing 90 n y C9 H9 BI5 sing 91 n n C10 C11 BI5 doub 92 n y C10 H10 BI5 sing 93 n n C11 C12 BI5 sing 94 n y C11 O1 BI5 sing 95 n n C12 C13 BI5 doub 96 n y C12 H12 BI5 sing 97 n n C13 H13 BI5 sing 98 n n O1 C14 BI5 sing 99 n n C14 C15 BI5 doub 100 n y C14 C19 BI5 sing 101 n y C15 C16 BI5 sing 102 n y C15 H15 BI5 sing 103 n n C16 C17 BI5 doub 104 n y C16 H16 BI5 sing 105 n n C17 C18 BI5 sing 106 n y C17 H17 BI5 sing 107 n n C18 C19 BI5 doub 108 n y C18 H18 BI5 sing 109 n n C19 H19 BI5 sing 110 n n # _atom_sites.entry_id 1ZYJ _atom_sites.fract_transf_matrix[1][1] 0.014758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 361 1 BOG DTR . C 3 BI5 A 1 362 1 BI5 BI4 . D 4 HOH A 1 363 1 HOH HOH . D 4 HOH A 2 364 2 HOH HOH . D 4 HOH A 3 365 3 HOH HOH . D 4 HOH A 4 366 4 HOH HOH . D 4 HOH A 5 367 5 HOH HOH . D 4 HOH A 6 368 6 HOH HOH . D 4 HOH A 7 369 7 HOH HOH . D 4 HOH A 8 370 8 HOH HOH . D 4 HOH A 9 371 9 HOH HOH . D 4 HOH A 10 372 10 HOH HOH . D 4 HOH A 11 373 11 HOH HOH . D 4 HOH A 12 374 12 HOH HOH . D 4 HOH A 13 375 13 HOH HOH . D 4 HOH A 14 376 14 HOH HOH . D 4 HOH A 15 377 15 HOH HOH . D 4 HOH A 16 378 16 HOH HOH . D 4 HOH A 17 379 17 HOH HOH . D 4 HOH A 18 380 18 HOH HOH . D 4 HOH A 19 381 19 HOH HOH . D 4 HOH A 20 382 20 HOH HOH . D 4 HOH A 21 383 21 HOH HOH . D 4 HOH A 22 384 22 HOH HOH . D 4 HOH A 23 385 23 HOH HOH . D 4 HOH A 24 386 24 HOH HOH . D 4 HOH A 25 387 25 HOH HOH . D 4 HOH A 26 388 26 HOH HOH . D 4 HOH A 27 389 27 HOH HOH . D 4 HOH A 28 390 28 HOH HOH . D 4 HOH A 29 391 29 HOH HOH . D 4 HOH A 30 392 30 HOH HOH . D 4 HOH A 31 393 31 HOH HOH . D 4 HOH A 32 394 32 HOH HOH . D 4 HOH A 33 395 33 HOH HOH . D 4 HOH A 34 396 34 HOH HOH . D 4 HOH A 35 397 35 HOH HOH . D 4 HOH A 36 398 36 HOH HOH . D 4 HOH A 37 399 37 HOH HOH . D 4 HOH A 38 400 38 HOH HOH . D 4 HOH A 39 401 39 HOH HOH . D 4 HOH A 40 402 40 HOH HOH . D 4 HOH A 41 403 41 HOH HOH . D 4 HOH A 42 404 42 HOH HOH . D 4 HOH A 43 405 43 HOH HOH . D 4 HOH A 44 406 44 HOH HOH . D 4 HOH A 45 407 45 HOH HOH . D 4 HOH A 46 408 46 HOH HOH . D 4 HOH A 47 409 47 HOH HOH . D 4 HOH A 48 410 48 HOH HOH . D 4 HOH A 49 411 49 HOH HOH . D 4 HOH A 50 412 50 HOH HOH . D 4 HOH A 51 413 51 HOH HOH . D 4 HOH A 52 414 52 HOH HOH . D 4 HOH A 53 415 53 HOH HOH . D 4 HOH A 54 416 54 HOH HOH . D 4 HOH A 55 417 55 HOH HOH . D 4 HOH A 56 418 56 HOH HOH . D 4 HOH A 57 419 57 HOH HOH . D 4 HOH A 58 420 58 HOH HOH . D 4 HOH A 59 421 59 HOH HOH . D 4 HOH A 60 422 60 HOH HOH . D 4 HOH A 61 423 61 HOH HOH . D 4 HOH A 62 424 62 HOH HOH . D 4 HOH A 63 425 63 HOH HOH . D 4 HOH A 64 426 64 HOH HOH . D 4 HOH A 65 427 65 HOH HOH . D 4 HOH A 66 428 66 HOH HOH . D 4 HOH A 67 429 67 HOH HOH . D 4 HOH A 68 430 68 HOH HOH . D 4 HOH A 69 431 69 HOH HOH . D 4 HOH A 70 432 70 HOH HOH . D 4 HOH A 71 433 71 HOH HOH . D 4 HOH A 72 434 72 HOH HOH . D 4 HOH A 73 435 73 HOH HOH . D 4 HOH A 74 436 74 HOH HOH . D 4 HOH A 75 437 75 HOH HOH . D 4 HOH A 76 438 76 HOH HOH . D 4 HOH A 77 439 77 HOH HOH . D 4 HOH A 78 440 78 HOH HOH . D 4 HOH A 79 441 79 HOH HOH . D 4 HOH A 80 442 80 HOH HOH . D 4 HOH A 81 443 81 HOH HOH . D 4 HOH A 82 444 82 HOH HOH . D 4 HOH A 83 445 83 HOH HOH . D 4 HOH A 84 446 84 HOH HOH . D 4 HOH A 85 447 85 HOH HOH . D 4 HOH A 86 448 86 HOH HOH . D 4 HOH A 87 449 87 HOH HOH . D 4 HOH A 88 450 88 HOH HOH . D 4 HOH A 89 451 89 HOH HOH . D 4 HOH A 90 452 90 HOH HOH . D 4 HOH A 91 453 91 HOH HOH . D 4 HOH A 92 454 92 HOH HOH . D 4 HOH A 93 455 93 HOH HOH . D 4 HOH A 94 456 94 HOH HOH . D 4 HOH A 95 457 95 HOH HOH . D 4 HOH A 96 458 96 HOH HOH . D 4 HOH A 97 459 97 HOH HOH . D 4 HOH A 98 460 98 HOH HOH . D 4 HOH A 99 461 99 HOH HOH . D 4 HOH A 100 462 100 HOH HOH . D 4 HOH A 101 463 101 HOH HOH . D 4 HOH A 102 464 102 HOH HOH . D 4 HOH A 103 465 103 HOH HOH . D 4 HOH A 104 466 104 HOH HOH . D 4 HOH A 105 467 105 HOH HOH . D 4 HOH A 106 468 106 HOH HOH . D 4 HOH A 107 469 107 HOH HOH . D 4 HOH A 108 470 108 HOH HOH . D 4 HOH A 109 471 109 HOH HOH . D 4 HOH A 110 472 110 HOH HOH . D 4 HOH A 111 473 111 HOH HOH . D 4 HOH A 112 474 112 HOH HOH . D 4 HOH A 113 475 113 HOH HOH . D 4 HOH A 114 476 114 HOH HOH . D 4 HOH A 115 477 115 HOH HOH . D 4 HOH A 116 478 117 HOH HOH . D 4 HOH A 117 479 118 HOH HOH . D 4 HOH A 118 480 119 HOH HOH . D 4 HOH A 119 481 120 HOH HOH . D 4 HOH A 120 482 121 HOH HOH . D 4 HOH A 121 483 122 HOH HOH . D 4 HOH A 122 484 123 HOH HOH . D 4 HOH A 123 485 124 HOH HOH . D 4 HOH A 124 486 125 HOH HOH . D 4 HOH A 125 487 126 HOH HOH . D 4 HOH A 126 488 127 HOH HOH . D 4 HOH A 127 489 128 HOH HOH . D 4 HOH A 128 490 129 HOH HOH . D 4 HOH A 129 491 130 HOH HOH . D 4 HOH A 130 492 131 HOH HOH . D 4 HOH A 131 493 132 HOH HOH . D 4 HOH A 132 494 133 HOH HOH . D 4 HOH A 133 495 134 HOH HOH . D 4 HOH A 134 496 135 HOH HOH . D 4 HOH A 135 497 136 HOH HOH . D 4 HOH A 136 498 137 HOH HOH . D 4 HOH A 137 499 138 HOH HOH . D 4 HOH A 138 500 139 HOH HOH . D 4 HOH A 139 501 140 HOH HOH . D 4 HOH A 140 502 141 HOH HOH . D 4 HOH A 141 503 142 HOH HOH . D 4 HOH A 142 504 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BI5 . . . C 3 52.189 39.05 -29.019 1 46.43 ? N1 BI5 362 A 1 HETATM 2 C C1 BI5 . . . C 3 51.428 39.313 -27.857 1 45.93 ? C1 BI5 362 A 1 HETATM 3 C C2 BI5 . . . C 3 51.541 40.562 -27.121 1 47.49 ? C2 BI5 362 A 1 HETATM 4 C C3 BI5 . . . C 3 52.483 41.546 -27.631 1 47.23 ? C3 BI5 362 A 1 HETATM 5 C C4 BI5 . . . C 3 53.266 41.27 -28.826 1 47.74 ? C4 BI5 362 A 1 HETATM 6 C C5 BI5 . . . C 3 53.106 40.004 -29.524 1 47.75 ? C5 BI5 362 A 1 HETATM 7 C C6 BI5 . . . C 3 50.455 38.262 -27.384 1 44.08 ? C6 BI5 362 A 1 HETATM 8 N N2 BI5 . . . C 3 50.935 37.541 -26.192 1 42.13 ? N2 BI5 362 A 1 HETATM 9 C C7 BI5 . . . C 3 51.702 36.475 -26.412 1 38.82 ? C7 BI5 362 A 1 HETATM 10 C C8 BI5 . . . C 3 52.537 35.898 -25.28 1 36.52 ? C8 BI5 362 A 1 HETATM 11 C C9 BI5 . . . C 3 53.113 34.575 -25.448 1 35.84 ? C9 BI5 362 A 1 HETATM 12 C C10 BI5 . . . C 3 53.835 34.038 -24.309 1 34.38 ? C10 BI5 362 A 1 HETATM 13 C C11 BI5 . . . C 3 53.951 34.809 -23.078 1 34.99 ? C11 BI5 362 A 1 HETATM 14 C C12 BI5 . . . C 3 53.384 36.14 -22.931 1 35.54 ? C12 BI5 362 A 1 HETATM 15 C C13 BI5 . . . C 3 52.663 36.689 -24.065 1 35.99 ? C13 BI5 362 A 1 HETATM 16 O O1 BI5 . . . C 3 54.538 34.311 -21.98 1 36.56 ? O1 BI5 362 A 1 HETATM 17 C C14 BI5 . . . C 3 55.035 33.072 -22.018 1 35.73 ? C14 BI5 362 A 1 HETATM 18 C C15 BI5 . . . C 3 54.181 32.017 -21.501 1 35.66 ? C15 BI5 362 A 1 HETATM 19 C C16 BI5 . . . C 3 54.724 30.668 -21.484 1 36.65 ? C16 BI5 362 A 1 HETATM 20 C C17 BI5 . . . C 3 56.071 30.42 -21.978 1 37.1 ? C17 BI5 362 A 1 HETATM 21 C C18 BI5 . . . C 3 56.916 31.482 -22.507 1 36.21 ? C18 BI5 362 A 1 HETATM 22 C C19 BI5 . . . C 3 56.379 32.836 -22.528 1 36.41 ? C19 BI5 362 A 1 HETATM 23 O O2 BI5 . . . C 3 51.741 35.963 -27.534 1 39.82 ? O2 BI5 362 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 367 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #